Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03060 and HGI48_RS03065 are separated by 11 nucleotides HGI48_RS03065 and HGI48_RS03070 are separated by 59 nucleotides HGI48_RS03070 and HGI48_RS03075 are separated by 14 nucleotides HGI48_RS03075 and HGI48_RS03080 overlap by 8 nucleotides
HGI48_RS03060: HGI48_RS03060 - phage tail sheath protein, at 651,290 to 652,462
_RS03060
HGI48_RS03065: HGI48_RS03065 - phage major tail tube protein, at 652,474 to 652,989
_RS03065
HGI48_RS03070: HGI48_RS03070 - phage tail assembly protein, at 653,049 to 653,351
_RS03070
HGI48_RS03075: HGI48_RS03075 - GpE family phage tail protein, at 653,366 to 653,485
_RS03075
HGI48_RS03080: HGI48_RS03080 - phage tail tape measure protein, at 653,478 to 656,318
_RS03080
Position (kb) 653
654 Strain fitness (log2 ratio) -2
-1
0
1 at 652.370 kb on + strand at 652.370 kb on + strand at 652.370 kb on + strand at 652.370 kb on + strand at 652.370 kb on + strand at 652.370 kb on + strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.427 kb on + strand at 652.427 kb on + strand at 652.427 kb on + strand at 652.427 kb on + strand at 652.427 kb on + strand at 652.427 kb on + strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.499 kb on - strand at 652.617 kb on + strand, within HGI48_RS03065 at 652.743 kb on + strand, within HGI48_RS03065 at 652.743 kb on + strand, within HGI48_RS03065 at 652.873 kb on + strand, within HGI48_RS03065 at 652.873 kb on + strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.876 kb on + strand, within HGI48_RS03065 at 652.877 kb on - strand, within HGI48_RS03065 at 652.877 kb on - strand, within HGI48_RS03065 at 652.923 kb on + strand, within HGI48_RS03065 at 652.923 kb on + strand at 652.987 kb on + strand at 652.987 kb on + strand at 653.031 kb on + strand at 653.032 kb on - strand at 653.032 kb on - strand at 653.032 kb on - strand at 653.037 kb on - strand at 653.141 kb on + strand, within HGI48_RS03070 at 653.142 kb on - strand, within HGI48_RS03070 at 653.225 kb on + strand, within HGI48_RS03070 at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.487 kb on - strand at 653.487 kb on - strand at 653.521 kb on + strand at 653.521 kb on + strand at 653.521 kb on + strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.525 kb on + strand at 653.679 kb on - strand at 653.807 kb on + strand, within HGI48_RS03080 at 653.807 kb on + strand, within HGI48_RS03080 at 653.808 kb on - strand, within HGI48_RS03080 at 653.808 kb on - strand at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 654.114 kb on + strand, within HGI48_RS03080 at 654.115 kb on - strand, within HGI48_RS03080 at 654.334 kb on - strand, within HGI48_RS03080 at 654.459 kb on + strand, within HGI48_RS03080 at 654.470 kb on - strand, within HGI48_RS03080 at 654.470 kb on - strand, within HGI48_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 652,370 + -0.6 652,370 + +1.5 652,370 + +0.2 652,370 + -2.1 652,370 + -1.1 652,370 + +0.5 652,371 - -0.1 652,371 - -0.1 652,371 - +0.3 652,371 - -0.3 652,371 - +0.1 652,371 - -0.1 652,371 - +0.5 652,427 + +0.8 652,427 + +0.5 652,427 + -1.8 652,427 + -0.8 652,427 + +1.0 652,427 + +0.3 652,428 - -0.5 652,428 - -1.5 652,428 - +0.5 652,428 - -0.1 652,428 - +1.3 652,428 - -0.2 652,428 - +0.4 652,428 - +1.3 652,499 - -0.0 652,617 + HGI48_RS03065 0.28 +0.5 652,743 + HGI48_RS03065 0.52 -0.3 652,743 + HGI48_RS03065 0.52 -0.2 652,873 + HGI48_RS03065 0.77 -2.1 652,873 + HGI48_RS03065 0.77 -0.2 652,874 - HGI48_RS03065 0.78 -0.2 652,874 - HGI48_RS03065 0.78 +0.1 652,874 - HGI48_RS03065 0.78 -0.5 652,874 - HGI48_RS03065 0.78 -1.8 652,876 + HGI48_RS03065 0.78 -0.6 652,877 - HGI48_RS03065 0.78 -0.3 652,877 - HGI48_RS03065 0.78 +0.1 652,923 + HGI48_RS03065 0.87 -0.5 652,923 + -0.5 652,987 + -0.2 652,987 + +0.3 653,031 + -0.2 653,032 - +0.5 653,032 - -0.3 653,032 - -0.8 653,037 - +1.1 653,141 + HGI48_RS03070 0.30 +0.6 653,142 - HGI48_RS03070 0.31 -0.5 653,225 + HGI48_RS03070 0.58 +0.5 653,483 + +0.5 653,483 + -0.7 653,483 + -0.2 653,483 + -0.4 653,483 + -0.8 653,484 - -0.3 653,484 - -1.8 653,484 - +1.1 653,484 - +0.3 653,484 - -1.8 653,484 - -1.9 653,487 - +1.5 653,487 - -0.5 653,521 + +1.0 653,521 + +1.7 653,521 + +1.2 653,522 - -0.1 653,522 - -0.1 653,522 - -1.5 653,522 - -1.3 653,525 + +0.5 653,679 - -0.5 653,807 + HGI48_RS03080 0.12 +0.3 653,807 + HGI48_RS03080 0.12 +1.7 653,808 - HGI48_RS03080 0.12 +0.6 653,808 - +0.9 653,811 + HGI48_RS03080 0.12 +0.3 653,811 + HGI48_RS03080 0.12 +0.3 653,811 + HGI48_RS03080 0.12 -2.5 653,811 + HGI48_RS03080 0.12 -1.5 653,811 + HGI48_RS03080 0.12 +1.2 653,812 - HGI48_RS03080 0.12 +0.1 653,812 - HGI48_RS03080 0.12 -0.2 653,812 - HGI48_RS03080 0.12 -1.5 653,812 - HGI48_RS03080 0.12 -1.5 653,812 - HGI48_RS03080 0.12 +0.0 653,812 - HGI48_RS03080 0.12 -0.5 654,114 + HGI48_RS03080 0.22 -0.3 654,115 - HGI48_RS03080 0.22 -0.8 654,334 - HGI48_RS03080 0.30 -1.5 654,459 + HGI48_RS03080 0.35 +0.2 654,470 - HGI48_RS03080 0.35 -0.7 654,470 - HGI48_RS03080 0.35 -0.1
Or see this region's nucleotide sequence