Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02835 and HGI48_RS02840 are separated by 146 nucleotides HGI48_RS02840 and HGI48_RS02845 overlap by 1 nucleotides
HGI48_RS02835: HGI48_RS02835 - pectate lyase, at 611,139 to 612,086
_RS02835
HGI48_RS02840: HGI48_RS02840 - transcriptional regulator UhpA, at 612,233 to 612,823
_RS02840
HGI48_RS02845: HGI48_RS02845 - signal transduction histidine-protein kinase/phosphatase UhpB, at 612,823 to 614,334
_RS02845
Position (kb) 612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 611.301 kb on - strand, within HGI48_RS02835 at 611.448 kb on - strand, within HGI48_RS02835 at 611.502 kb on - strand, within HGI48_RS02835 at 611.522 kb on + strand, within HGI48_RS02835 at 611.523 kb on - strand, within HGI48_RS02835 at 611.523 kb on - strand, within HGI48_RS02835 at 611.543 kb on + strand, within HGI48_RS02835 at 611.543 kb on + strand, within HGI48_RS02835 at 611.543 kb on + strand, within HGI48_RS02835 at 611.543 kb on + strand, within HGI48_RS02835 at 611.578 kb on - strand, within HGI48_RS02835 at 611.688 kb on + strand, within HGI48_RS02835 at 611.724 kb on + strand, within HGI48_RS02835 at 611.724 kb on + strand, within HGI48_RS02835 at 611.725 kb on - strand, within HGI48_RS02835 at 611.735 kb on + strand, within HGI48_RS02835 at 611.736 kb on - strand, within HGI48_RS02835 at 611.736 kb on - strand, within HGI48_RS02835 at 611.736 kb on - strand, within HGI48_RS02835 at 611.736 kb on - strand, within HGI48_RS02835 at 611.736 kb on - strand, within HGI48_RS02835 at 611.736 kb on - strand, within HGI48_RS02835 at 611.739 kb on + strand, within HGI48_RS02835 at 611.739 kb on + strand, within HGI48_RS02835 at 611.739 kb on + strand, within HGI48_RS02835 at 611.740 kb on - strand, within HGI48_RS02835 at 611.740 kb on - strand, within HGI48_RS02835 at 611.740 kb on - strand, within HGI48_RS02835 at 611.772 kb on + strand at 611.772 kb on + strand, within HGI48_RS02835 at 611.773 kb on - strand at 611.773 kb on - strand, within HGI48_RS02835 at 611.775 kb on + strand at 611.785 kb on - strand, within HGI48_RS02835 at 611.785 kb on - strand, within HGI48_RS02835 at 611.785 kb on - strand, within HGI48_RS02835 at 611.787 kb on - strand, within HGI48_RS02835 at 611.787 kb on - strand, within HGI48_RS02835 at 611.806 kb on - strand, within HGI48_RS02835 at 611.838 kb on - strand, within HGI48_RS02835 at 611.853 kb on + strand, within HGI48_RS02835 at 611.855 kb on + strand, within HGI48_RS02835 at 611.855 kb on + strand, within HGI48_RS02835 at 611.855 kb on + strand, within HGI48_RS02835 at 611.856 kb on - strand, within HGI48_RS02835 at 611.859 kb on + strand, within HGI48_RS02835 at 611.859 kb on + strand, within HGI48_RS02835 at 611.859 kb on + strand, within HGI48_RS02835 at 611.860 kb on - strand, within HGI48_RS02835 at 611.860 kb on - strand, within HGI48_RS02835 at 611.882 kb on + strand, within HGI48_RS02835 at 611.903 kb on + strand, within HGI48_RS02835 at 611.994 kb on + strand at 611.994 kb on + strand at 611.995 kb on - strand at 611.995 kb on - strand at 612.000 kb on + strand at 612.000 kb on + strand at 612.001 kb on - strand at 612.001 kb on - strand at 612.045 kb on + strand at 612.046 kb on - strand at 612.046 kb on - strand at 612.119 kb on + strand at 612.126 kb on + strand at 612.126 kb on + strand at 612.126 kb on + strand at 612.127 kb on - strand at 612.127 kb on - strand at 612.127 kb on - strand at 612.127 kb on - strand at 612.127 kb on - strand at 612.127 kb on - strand at 612.127 kb on - strand at 612.133 kb on + strand at 612.134 kb on - strand at 612.148 kb on + strand at 612.148 kb on + strand at 612.148 kb on + strand at 612.148 kb on + strand at 612.148 kb on + strand at 612.148 kb on + strand at 612.148 kb on + strand at 612.157 kb on - strand at 612.157 kb on - strand at 612.197 kb on + strand at 612.202 kb on + strand at 612.202 kb on + strand at 612.203 kb on - strand at 612.203 kb on - strand at 612.203 kb on - strand at 612.203 kb on - strand at 612.203 kb on - strand at 612.203 kb on - strand at 612.203 kb on - strand at 612.239 kb on - strand at 612.265 kb on + strand at 612.266 kb on - strand at 612.266 kb on - strand at 612.266 kb on - strand at 612.266 kb on - strand at 612.312 kb on + strand, within HGI48_RS02840 at 612.312 kb on + strand, within HGI48_RS02840 at 612.312 kb on + strand, within HGI48_RS02840 at 612.312 kb on + strand, within HGI48_RS02840 at 612.312 kb on + strand, within HGI48_RS02840 at 612.312 kb on + strand at 612.312 kb on + strand, within HGI48_RS02840 at 612.313 kb on - strand, within HGI48_RS02840 at 612.313 kb on - strand, within HGI48_RS02840 at 612.313 kb on - strand at 612.313 kb on - strand, within HGI48_RS02840 at 612.313 kb on - strand, within HGI48_RS02840 at 612.313 kb on - strand, within HGI48_RS02840 at 612.385 kb on + strand at 612.385 kb on + strand, within HGI48_RS02840 at 612.385 kb on + strand at 612.385 kb on + strand, within HGI48_RS02840 at 612.385 kb on + strand, within HGI48_RS02840 at 612.385 kb on + strand, within HGI48_RS02840 at 612.385 kb on + strand, within HGI48_RS02840 at 612.386 kb on - strand, within HGI48_RS02840 at 612.394 kb on + strand at 612.460 kb on + strand at 612.460 kb on + strand, within HGI48_RS02840 at 612.460 kb on + strand at 612.460 kb on + strand, within HGI48_RS02840 at 612.460 kb on + strand, within HGI48_RS02840 at 612.461 kb on - strand, within HGI48_RS02840 at 612.461 kb on - strand, within HGI48_RS02840 at 612.461 kb on - strand, within HGI48_RS02840 at 612.461 kb on - strand at 612.461 kb on - strand, within HGI48_RS02840 at 612.461 kb on - strand, within HGI48_RS02840 at 612.492 kb on + strand, within HGI48_RS02840 at 612.493 kb on - strand, within HGI48_RS02840 at 612.493 kb on - strand, within HGI48_RS02840 at 612.493 kb on - strand, within HGI48_RS02840 at 612.593 kb on + strand, within HGI48_RS02840 at 612.594 kb on - strand, within HGI48_RS02840 at 612.835 kb on - strand at 612.835 kb on - strand at 612.837 kb on + strand at 612.837 kb on + strand at 612.838 kb on - strand at 612.838 kb on - strand at 612.838 kb on - strand at 612.870 kb on + strand at 612.870 kb on + strand at 612.871 kb on - strand at 612.871 kb on - strand at 613.079 kb on + strand, within HGI48_RS02845 at 613.079 kb on + strand, within HGI48_RS02845 at 613.080 kb on - strand, within HGI48_RS02845 at 613.094 kb on + strand, within HGI48_RS02845 at 613.094 kb on + strand, within HGI48_RS02845 at 613.303 kb on + strand, within HGI48_RS02845 at 613.303 kb on + strand, within HGI48_RS02845 at 613.303 kb on + strand, within HGI48_RS02845 at 613.303 kb on + strand, within HGI48_RS02845 at 613.303 kb on + strand, within HGI48_RS02845 at 613.304 kb on - strand, within HGI48_RS02845 at 613.304 kb on - strand, within HGI48_RS02845 at 613.304 kb on - strand, within HGI48_RS02845 at 613.304 kb on - strand, within HGI48_RS02845 at 613.304 kb on - strand, within HGI48_RS02845 at 613.387 kb on + strand, within HGI48_RS02845 at 613.387 kb on + strand at 613.388 kb on - strand, within HGI48_RS02845 at 613.388 kb on - strand, within HGI48_RS02845 at 613.388 kb on - strand, within HGI48_RS02845 at 613.388 kb on - strand, within HGI48_RS02845 at 613.453 kb on - strand, within HGI48_RS02845 at 613.498 kb on + strand, within HGI48_RS02845 at 613.638 kb on + strand, within HGI48_RS02845 at 613.639 kb on - strand, within HGI48_RS02845 at 613.639 kb on - strand, within HGI48_RS02845 at 613.660 kb on - strand, within HGI48_RS02845 at 613.729 kb on + strand, within HGI48_RS02845 at 613.729 kb on + strand, within HGI48_RS02845 at 613.729 kb on + strand, within HGI48_RS02845 at 613.729 kb on + strand at 613.729 kb on + strand at 613.730 kb on - strand, within HGI48_RS02845 at 613.730 kb on - strand, within HGI48_RS02845 at 613.730 kb on - strand, within HGI48_RS02845 at 613.806 kb on + strand, within HGI48_RS02845 at 613.807 kb on - strand, within HGI48_RS02845
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 611,301 - HGI48_RS02835 0.17 -0.1 611,448 - HGI48_RS02835 0.33 +1.2 611,502 - HGI48_RS02835 0.38 -0.7 611,522 + HGI48_RS02835 0.40 +0.0 611,523 - HGI48_RS02835 0.41 +0.1 611,523 - HGI48_RS02835 0.41 -1.0 611,543 + HGI48_RS02835 0.43 -0.8 611,543 + HGI48_RS02835 0.43 -0.5 611,543 + HGI48_RS02835 0.43 +0.3 611,543 + HGI48_RS02835 0.43 -1.3 611,578 - HGI48_RS02835 0.46 -0.5 611,688 + HGI48_RS02835 0.58 -0.2 611,724 + HGI48_RS02835 0.62 +0.7 611,724 + HGI48_RS02835 0.62 +0.1 611,725 - HGI48_RS02835 0.62 +0.4 611,735 + HGI48_RS02835 0.63 +0.8 611,736 - HGI48_RS02835 0.63 -0.5 611,736 - HGI48_RS02835 0.63 -0.5 611,736 - HGI48_RS02835 0.63 -0.9 611,736 - HGI48_RS02835 0.63 +0.3 611,736 - HGI48_RS02835 0.63 -1.8 611,736 - HGI48_RS02835 0.63 +0.6 611,739 + HGI48_RS02835 0.63 -2.0 611,739 + HGI48_RS02835 0.63 +0.3 611,739 + HGI48_RS02835 0.63 -2.9 611,740 - HGI48_RS02835 0.63 -0.4 611,740 - HGI48_RS02835 0.63 +0.2 611,740 - HGI48_RS02835 0.63 -0.2 611,772 + +0.5 611,772 + HGI48_RS02835 0.67 +1.1 611,773 - +0.5 611,773 - HGI48_RS02835 0.67 +0.1 611,775 + +0.5 611,785 - HGI48_RS02835 0.68 -2.5 611,785 - HGI48_RS02835 0.68 +0.1 611,785 - HGI48_RS02835 0.68 -0.0 611,787 - HGI48_RS02835 0.68 +0.2 611,787 - HGI48_RS02835 0.68 +0.0 611,806 - HGI48_RS02835 0.70 -1.2 611,838 - HGI48_RS02835 0.74 +1.0 611,853 + HGI48_RS02835 0.75 -1.6 611,855 + HGI48_RS02835 0.76 -0.0 611,855 + HGI48_RS02835 0.76 +0.8 611,855 + HGI48_RS02835 0.76 +1.0 611,856 - HGI48_RS02835 0.76 -0.5 611,859 + HGI48_RS02835 0.76 -0.0 611,859 + HGI48_RS02835 0.76 -1.0 611,859 + HGI48_RS02835 0.76 -0.9 611,860 - HGI48_RS02835 0.76 -0.2 611,860 - HGI48_RS02835 0.76 -0.3 611,882 + HGI48_RS02835 0.78 -0.4 611,903 + HGI48_RS02835 0.81 +1.3 611,994 + -2.2 611,994 + -0.8 611,995 - -1.8 611,995 - -0.5 612,000 + -2.3 612,000 + +0.3 612,001 - -0.5 612,001 - -1.5 612,045 + +0.2 612,046 - -1.0 612,046 - -0.2 612,119 + -0.3 612,126 + -0.0 612,126 + +0.8 612,126 + +1.3 612,127 - +0.1 612,127 - -2.0 612,127 - +1.7 612,127 - -1.0 612,127 - -0.1 612,127 - +0.5 612,127 - +0.8 612,133 + -2.6 612,134 - +1.3 612,148 + +0.5 612,148 + -0.9 612,148 + +0.1 612,148 + +0.3 612,148 + -1.5 612,148 + -3.7 612,148 + +0.8 612,157 - -0.1 612,157 - +0.1 612,197 + -0.6 612,202 + -0.3 612,202 + +0.3 612,203 - +0.1 612,203 - +1.0 612,203 - +0.2 612,203 - -0.8 612,203 - +0.2 612,203 - -0.2 612,203 - -1.2 612,239 - +0.0 612,265 + -0.5 612,266 - -0.0 612,266 - +0.0 612,266 - +0.5 612,266 - -0.7 612,312 + HGI48_RS02840 0.13 +1.0 612,312 + HGI48_RS02840 0.13 -0.3 612,312 + HGI48_RS02840 0.13 -2.0 612,312 + HGI48_RS02840 0.13 +0.7 612,312 + HGI48_RS02840 0.13 -0.5 612,312 + -0.5 612,312 + HGI48_RS02840 0.13 -0.3 612,313 - HGI48_RS02840 0.14 +1.1 612,313 - HGI48_RS02840 0.14 -1.0 612,313 - -0.0 612,313 - HGI48_RS02840 0.14 -0.6 612,313 - HGI48_RS02840 0.14 +0.2 612,313 - HGI48_RS02840 0.14 -0.7 612,385 + +0.5 612,385 + HGI48_RS02840 0.26 +0.4 612,385 + +1.1 612,385 + HGI48_RS02840 0.26 +0.1 612,385 + HGI48_RS02840 0.26 +0.8 612,385 + HGI48_RS02840 0.26 -0.4 612,385 + HGI48_RS02840 0.26 -0.4 612,386 - HGI48_RS02840 0.26 -0.5 612,394 + -1.0 612,460 + +0.5 612,460 + HGI48_RS02840 0.38 -1.2 612,460 + +0.5 612,460 + HGI48_RS02840 0.38 -0.7 612,460 + HGI48_RS02840 0.38 -0.0 612,461 - HGI48_RS02840 0.39 -2.0 612,461 - HGI48_RS02840 0.39 -1.0 612,461 - HGI48_RS02840 0.39 -0.6 612,461 - -0.5 612,461 - HGI48_RS02840 0.39 +1.4 612,461 - HGI48_RS02840 0.39 +1.4 612,492 + HGI48_RS02840 0.44 +1.2 612,493 - HGI48_RS02840 0.44 +0.2 612,493 - HGI48_RS02840 0.44 -1.3 612,493 - HGI48_RS02840 0.44 -1.2 612,593 + HGI48_RS02840 0.61 -2.8 612,594 - HGI48_RS02840 0.61 -0.5 612,835 - +0.5 612,835 - -0.0 612,837 + -0.6 612,837 + -0.0 612,838 - -1.1 612,838 - +0.2 612,838 - +1.7 612,870 + -1.5 612,870 + +0.0 612,871 - -0.3 612,871 - -1.5 613,079 + HGI48_RS02845 0.17 -0.2 613,079 + HGI48_RS02845 0.17 +0.7 613,080 - HGI48_RS02845 0.17 -1.0 613,094 + HGI48_RS02845 0.18 +0.4 613,094 + HGI48_RS02845 0.18 -0.3 613,303 + HGI48_RS02845 0.32 -0.2 613,303 + HGI48_RS02845 0.32 +1.3 613,303 + HGI48_RS02845 0.32 +0.4 613,303 + HGI48_RS02845 0.32 -0.6 613,303 + HGI48_RS02845 0.32 -0.3 613,304 - HGI48_RS02845 0.32 -0.8 613,304 - HGI48_RS02845 0.32 +0.3 613,304 - HGI48_RS02845 0.32 -0.1 613,304 - HGI48_RS02845 0.32 +0.1 613,304 - HGI48_RS02845 0.32 -0.2 613,387 + HGI48_RS02845 0.37 +0.4 613,387 + +1.1 613,388 - HGI48_RS02845 0.37 +0.3 613,388 - HGI48_RS02845 0.37 -0.3 613,388 - HGI48_RS02845 0.37 -1.6 613,388 - HGI48_RS02845 0.37 +0.5 613,453 - HGI48_RS02845 0.42 +0.5 613,498 + HGI48_RS02845 0.45 +1.1 613,638 + HGI48_RS02845 0.54 +0.1 613,639 - HGI48_RS02845 0.54 -2.0 613,639 - HGI48_RS02845 0.54 +0.2 613,660 - HGI48_RS02845 0.55 -1.3 613,729 + HGI48_RS02845 0.60 -0.5 613,729 + HGI48_RS02845 0.60 -0.3 613,729 + HGI48_RS02845 0.60 +0.2 613,729 + -0.0 613,729 + +2.3 613,730 - HGI48_RS02845 0.60 -1.0 613,730 - HGI48_RS02845 0.60 +0.3 613,730 - HGI48_RS02845 0.60 -0.2 613,806 + HGI48_RS02845 0.65 +0.0 613,807 - HGI48_RS02845 0.65 -0.4
Or see this region's nucleotide sequence