Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02795

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02790 and HGI48_RS02795 are separated by 236 nucleotidesHGI48_RS02795 and HGI48_RS02800 are separated by 554 nucleotides HGI48_RS02790: HGI48_RS02790 - transcriptional regulator ExuR, at 599,540 to 600,319 _RS02790 HGI48_RS02795: HGI48_RS02795 - MFS transporter, at 600,556 to 601,857 _RS02795 HGI48_RS02800: HGI48_RS02800 - glucuronate isomerase, at 602,412 to 603,830 _RS02800 Position (kb) 600 601 602Strain fitness (log2 ratio) -2 -1 0 1 2at 599.599 kb on - strandat 599.771 kb on - strand, within HGI48_RS02790at 599.873 kb on + strand, within HGI48_RS02790at 599.873 kb on + strand, within HGI48_RS02790at 599.873 kb on + strand, within HGI48_RS02790at 599.873 kb on + strand, within HGI48_RS02790at 599.874 kb on - strand, within HGI48_RS02790at 599.874 kb on - strand, within HGI48_RS02790at 599.874 kb on - strand, within HGI48_RS02790at 600.005 kb on + strand, within HGI48_RS02790at 600.332 kb on + strandat 600.333 kb on - strandat 600.333 kb on - strandat 600.333 kb on - strandat 600.337 kb on + strandat 600.337 kb on + strandat 600.402 kb on + strandat 600.403 kb on - strandat 600.471 kb on + strandat 600.471 kb on + strandat 600.471 kb on + strandat 600.472 kb on - strandat 600.472 kb on - strandat 600.516 kb on - strandat 600.516 kb on - strandat 600.625 kb on + strandat 600.670 kb on + strandat 600.881 kb on + strandat 600.882 kb on - strand, within HGI48_RS02795at 600.882 kb on - strand, within HGI48_RS02795at 600.917 kb on - strand, within HGI48_RS02795at 600.962 kb on - strand, within HGI48_RS02795at 600.980 kb on + strand, within HGI48_RS02795at 600.980 kb on + strand, within HGI48_RS02795at 600.981 kb on - strand, within HGI48_RS02795at 600.981 kb on - strand, within HGI48_RS02795at 601.004 kb on + strand, within HGI48_RS02795at 601.004 kb on + strand, within HGI48_RS02795at 601.005 kb on - strand, within HGI48_RS02795at 601.005 kb on - strand, within HGI48_RS02795at 601.005 kb on - strand, within HGI48_RS02795at 601.086 kb on - strand, within HGI48_RS02795at 601.086 kb on - strand, within HGI48_RS02795at 601.256 kb on + strand, within HGI48_RS02795at 601.256 kb on + strand, within HGI48_RS02795at 601.256 kb on + strand, within HGI48_RS02795at 601.304 kb on + strand, within HGI48_RS02795at 601.305 kb on - strand, within HGI48_RS02795at 601.305 kb on - strand, within HGI48_RS02795at 601.310 kb on + strand, within HGI48_RS02795at 601.311 kb on - strand, within HGI48_RS02795at 601.311 kb on - strand, within HGI48_RS02795at 601.330 kb on + strand, within HGI48_RS02795at 601.335 kb on + strand, within HGI48_RS02795at 601.335 kb on + strand, within HGI48_RS02795at 601.336 kb on - strand, within HGI48_RS02795at 601.446 kb on - strandat 601.446 kb on - strand, within HGI48_RS02795at 601.446 kb on - strand, within HGI48_RS02795at 601.647 kb on + strand, within HGI48_RS02795at 601.647 kb on + strand, within HGI48_RS02795at 601.658 kb on + strand, within HGI48_RS02795at 601.659 kb on - strand, within HGI48_RS02795at 601.697 kb on + strand, within HGI48_RS02795at 601.698 kb on - strand, within HGI48_RS02795at 601.710 kb on + strand, within HGI48_RS02795at 601.710 kb on + strand, within HGI48_RS02795at 601.711 kb on - strand, within HGI48_RS02795at 601.711 kb on - strand, within HGI48_RS02795at 601.711 kb on - strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strandat 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.712 kb on + strand, within HGI48_RS02795at 601.713 kb on - strand, within HGI48_RS02795at 601.713 kb on - strand, within HGI48_RS02795at 601.713 kb on - strand, within HGI48_RS02795at 601.713 kb on - strand, within HGI48_RS02795at 601.713 kb on - strand, within HGI48_RS02795at 601.713 kb on - strand, within HGI48_RS02795at 601.713 kb on - strandat 601.713 kb on - strand, within HGI48_RS02795at 601.713 kb on - strand, within HGI48_RS02795at 601.718 kb on + strand, within HGI48_RS02795at 601.718 kb on + strand, within HGI48_RS02795at 601.718 kb on + strand, within HGI48_RS02795at 601.719 kb on - strand, within HGI48_RS02795at 601.719 kb on - strand, within HGI48_RS02795at 601.735 kb on - strandat 601.780 kb on - strandat 601.879 kb on - strandat 601.879 kb on - strandat 601.916 kb on + strandat 601.917 kb on - strandat 601.922 kb on + strandat 602.085 kb on + strandat 602.187 kb on - strandat 602.372 kb on - strandat 602.394 kb on + strandat 602.394 kb on + strandat 602.395 kb on - strandat 602.425 kb on + strandat 602.590 kb on - strand, within HGI48_RS02800at 602.591 kb on + strand, within HGI48_RS02800at 602.591 kb on + strand, within HGI48_RS02800at 602.592 kb on - strand, within HGI48_RS02800at 602.592 kb on - strand, within HGI48_RS02800at 602.693 kb on + strand, within HGI48_RS02800at 602.712 kb on + strand, within HGI48_RS02800at 602.713 kb on - strand, within HGI48_RS02800at 602.777 kb on + strand, within HGI48_RS02800at 602.784 kb on - strand, within HGI48_RS02800

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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599,599 - +0.8
599,771 - HGI48_RS02790 0.30 -1.5
599,873 + HGI48_RS02790 0.43 +0.1
599,873 + HGI48_RS02790 0.43 -0.4
599,873 + HGI48_RS02790 0.43 -0.0
599,873 + HGI48_RS02790 0.43 -0.6
599,874 - HGI48_RS02790 0.43 -1.5
599,874 - HGI48_RS02790 0.43 -0.5
599,874 - HGI48_RS02790 0.43 -1.1
600,005 + HGI48_RS02790 0.60 -0.9
600,332 + -0.8
600,333 - +0.2
600,333 - +0.2
600,333 - -1.2
600,337 + +0.1
600,337 + -0.4
600,402 + -0.2
600,403 - -0.3
600,471 + +0.5
600,471 + +0.5
600,471 + +1.5
600,472 - -0.6
600,472 - -1.8
600,516 - +0.5
600,516 - +0.8
600,625 + -1.2
600,670 + +1.2
600,881 + +1.0
600,882 - HGI48_RS02795 0.25 -0.5
600,882 - HGI48_RS02795 0.25 +0.9
600,917 - HGI48_RS02795 0.28 +1.3
600,962 - HGI48_RS02795 0.31 -1.9
600,980 + HGI48_RS02795 0.33 -0.9
600,980 + HGI48_RS02795 0.33 -0.8
600,981 - HGI48_RS02795 0.33 -2.5
600,981 - HGI48_RS02795 0.33 -0.0
601,004 + HGI48_RS02795 0.34 -1.3
601,004 + HGI48_RS02795 0.34 -0.6
601,005 - HGI48_RS02795 0.34 +1.3
601,005 - HGI48_RS02795 0.34 -0.5
601,005 - HGI48_RS02795 0.34 -0.5
601,086 - HGI48_RS02795 0.41 +0.1
601,086 - HGI48_RS02795 0.41 +1.5
601,256 + HGI48_RS02795 0.54 -0.1
601,256 + HGI48_RS02795 0.54 +0.1
601,256 + HGI48_RS02795 0.54 -0.5
601,304 + HGI48_RS02795 0.57 -1.1
601,305 - HGI48_RS02795 0.58 +0.3
601,305 - HGI48_RS02795 0.58 -2.0
601,310 + HGI48_RS02795 0.58 -0.3
601,311 - HGI48_RS02795 0.58 -0.1
601,311 - HGI48_RS02795 0.58 -0.3
601,330 + HGI48_RS02795 0.59 -0.9
601,335 + HGI48_RS02795 0.60 -0.5
601,335 + HGI48_RS02795 0.60 -2.0
601,336 - HGI48_RS02795 0.60 +0.3
601,446 - -1.0
601,446 - HGI48_RS02795 0.68 -0.8
601,446 - HGI48_RS02795 0.68 +0.2
601,647 + HGI48_RS02795 0.84 -2.0
601,647 + HGI48_RS02795 0.84 +0.3
601,658 + HGI48_RS02795 0.85 -0.7
601,659 - HGI48_RS02795 0.85 +0.3
601,697 + HGI48_RS02795 0.88 +0.0
601,698 - HGI48_RS02795 0.88 -0.1
601,710 + HGI48_RS02795 0.89 +0.3
601,710 + HGI48_RS02795 0.89 -0.9
601,711 - HGI48_RS02795 0.89 +0.1
601,711 - HGI48_RS02795 0.89 -0.5
601,711 - HGI48_RS02795 0.89 +0.5
601,712 + HGI48_RS02795 0.89 -0.2
601,712 + HGI48_RS02795 0.89 +0.5
601,712 + HGI48_RS02795 0.89 +1.1
601,712 + HGI48_RS02795 0.89 +1.5
601,712 + HGI48_RS02795 0.89 +0.7
601,712 + HGI48_RS02795 0.89 +0.5
601,712 + HGI48_RS02795 0.89 +0.3
601,712 + HGI48_RS02795 0.89 -0.8
601,712 + +2.3
601,712 + HGI48_RS02795 0.89 -0.6
601,712 + HGI48_RS02795 0.89 +0.5
601,712 + HGI48_RS02795 0.89 -1.2
601,712 + HGI48_RS02795 0.89 -0.6
601,712 + HGI48_RS02795 0.89 -0.8
601,713 - HGI48_RS02795 0.89 -1.5
601,713 - HGI48_RS02795 0.89 -1.5
601,713 - HGI48_RS02795 0.89 -0.0
601,713 - HGI48_RS02795 0.89 +0.8
601,713 - HGI48_RS02795 0.89 +0.1
601,713 - HGI48_RS02795 0.89 +0.9
601,713 - -1.0
601,713 - HGI48_RS02795 0.89 -0.0
601,713 - HGI48_RS02795 0.89 -1.2
601,718 + HGI48_RS02795 0.89 -0.7
601,718 + HGI48_RS02795 0.89 -0.5
601,718 + HGI48_RS02795 0.89 -0.2
601,719 - HGI48_RS02795 0.89 +1.1
601,719 - HGI48_RS02795 0.89 -0.5
601,735 - +0.5
601,780 - -0.8
601,879 - +0.2
601,879 - +0.4
601,916 + +1.3
601,917 - +0.5
601,922 + -0.0
602,085 + -0.8
602,187 - +0.1
602,372 - +1.5
602,394 + +0.9
602,394 + +1.7
602,395 - -1.8
602,425 + -0.8
602,590 - HGI48_RS02800 0.13 -0.2
602,591 + HGI48_RS02800 0.13 -0.5
602,591 + HGI48_RS02800 0.13 -1.0
602,592 - HGI48_RS02800 0.13 +0.5
602,592 - HGI48_RS02800 0.13 -0.3
602,693 + HGI48_RS02800 0.20 +1.2
602,712 + HGI48_RS02800 0.21 +1.2
602,713 - HGI48_RS02800 0.21 +0.3
602,777 + HGI48_RS02800 0.26 -0.3
602,784 - HGI48_RS02800 0.26 -1.0

Or see this region's nucleotide sequence