Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02685

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02680 and HGI48_RS02685 overlap by 25 nucleotidesHGI48_RS02685 and HGI48_RS02690 are separated by 114 nucleotides HGI48_RS02680: HGI48_RS02680 - protein-disulfide reductase DsbD, at 578,419 to 580,155 _RS02680 HGI48_RS02685: HGI48_RS02685 - divalent cation tolerance protein CutA, at 580,131 to 580,514 _RS02685 HGI48_RS02690: HGI48_RS02690 - anaerobic C4-dicarboxylate transporter, at 580,629 to 581,933 _RS02690 Position (kb) 580 581Strain fitness (log2 ratio) -2 -1 0 1 2at 579.131 kb on + strandat 579.131 kb on + strand, within HGI48_RS02680at 579.131 kb on + strand, within HGI48_RS02680at 579.132 kb on - strand, within HGI48_RS02680at 579.132 kb on - strand, within HGI48_RS02680at 579.176 kb on + strandat 579.176 kb on + strand, within HGI48_RS02680at 579.176 kb on + strand, within HGI48_RS02680at 579.177 kb on - strand, within HGI48_RS02680at 579.177 kb on - strand, within HGI48_RS02680at 579.177 kb on - strand, within HGI48_RS02680at 579.330 kb on + strandat 579.331 kb on - strand, within HGI48_RS02680at 579.331 kb on - strand, within HGI48_RS02680at 579.333 kb on - strand, within HGI48_RS02680at 579.393 kb on - strandat 579.393 kb on - strand, within HGI48_RS02680at 579.393 kb on - strand, within HGI48_RS02680at 579.393 kb on - strand, within HGI48_RS02680at 579.458 kb on + strand, within HGI48_RS02680at 579.459 kb on - strand, within HGI48_RS02680at 579.459 kb on - strand, within HGI48_RS02680at 579.482 kb on + strand, within HGI48_RS02680at 579.482 kb on + strand, within HGI48_RS02680at 579.482 kb on + strand, within HGI48_RS02680at 579.482 kb on + strand, within HGI48_RS02680at 579.483 kb on - strand, within HGI48_RS02680at 579.483 kb on - strand, within HGI48_RS02680at 579.483 kb on - strand, within HGI48_RS02680at 579.483 kb on - strand, within HGI48_RS02680at 579.560 kb on + strand, within HGI48_RS02680at 579.561 kb on - strand, within HGI48_RS02680at 579.597 kb on + strand, within HGI48_RS02680at 579.644 kb on + strand, within HGI48_RS02680at 579.644 kb on + strand, within HGI48_RS02680at 579.644 kb on + strand, within HGI48_RS02680at 579.644 kb on + strand, within HGI48_RS02680at 579.644 kb on + strand, within HGI48_RS02680at 579.645 kb on - strand, within HGI48_RS02680at 579.645 kb on - strand, within HGI48_RS02680at 579.645 kb on - strand, within HGI48_RS02680at 579.767 kb on + strand, within HGI48_RS02680at 579.767 kb on + strand, within HGI48_RS02680at 579.768 kb on - strand, within HGI48_RS02680at 579.768 kb on - strand, within HGI48_RS02680at 579.837 kb on - strand, within HGI48_RS02680at 579.841 kb on - strand, within HGI48_RS02680at 579.910 kb on - strand, within HGI48_RS02680at 579.910 kb on - strand, within HGI48_RS02680at 579.947 kb on + strand, within HGI48_RS02680at 579.947 kb on + strand, within HGI48_RS02680at 579.947 kb on + strand, within HGI48_RS02680at 579.948 kb on - strandat 579.948 kb on - strand, within HGI48_RS02680at 580.162 kb on + strandat 580.163 kb on - strandat 580.271 kb on + strand, within HGI48_RS02685at 580.271 kb on + strand, within HGI48_RS02685at 580.271 kb on + strand, within HGI48_RS02685at 580.272 kb on - strand, within HGI48_RS02685at 580.307 kb on + strand, within HGI48_RS02685at 580.307 kb on + strand, within HGI48_RS02685at 580.307 kb on + strand, within HGI48_RS02685at 580.307 kb on + strand, within HGI48_RS02685at 580.308 kb on - strand, within HGI48_RS02685at 580.345 kb on - strand, within HGI48_RS02685at 580.428 kb on + strand, within HGI48_RS02685at 580.428 kb on + strand, within HGI48_RS02685at 580.428 kb on + strand, within HGI48_RS02685at 580.428 kb on + strand, within HGI48_RS02685at 580.428 kb on + strand, within HGI48_RS02685at 580.429 kb on - strand, within HGI48_RS02685at 580.429 kb on - strand, within HGI48_RS02685at 580.429 kb on - strand, within HGI48_RS02685at 580.429 kb on - strand, within HGI48_RS02685at 580.432 kb on - strand, within HGI48_RS02685at 580.432 kb on - strand, within HGI48_RS02685at 580.450 kb on - strandat 580.475 kb on + strand, within HGI48_RS02685at 580.475 kb on + strand, within HGI48_RS02685at 580.475 kb on + strand, within HGI48_RS02685at 580.476 kb on - strandat 580.476 kb on - strandat 580.476 kb on - strandat 580.476 kb on - strandat 580.476 kb on - strandat 580.476 kb on - strandat 580.476 kb on - strandat 580.493 kb on + strandat 580.493 kb on + strandat 580.493 kb on + strandat 580.493 kb on + strandat 580.493 kb on + strandat 580.494 kb on - strandat 580.494 kb on - strandat 580.494 kb on - strandat 580.547 kb on + strandat 580.547 kb on + strandat 580.547 kb on + strandat 580.547 kb on + strandat 580.548 kb on - strandat 580.548 kb on - strandat 580.548 kb on - strandat 580.548 kb on - strandat 580.548 kb on - strandat 580.548 kb on - strandat 580.548 kb on - strandat 580.548 kb on - strandat 580.550 kb on - strandat 580.550 kb on - strandat 580.571 kb on + strandat 580.571 kb on + strandat 580.572 kb on - strandat 580.572 kb on - strandat 580.630 kb on + strandat 580.720 kb on + strandat 580.720 kb on + strandat 580.720 kb on + strandat 580.721 kb on - strandat 580.721 kb on - strandat 580.721 kb on - strandat 580.721 kb on - strandat 580.897 kb on + strand, within HGI48_RS02690at 581.007 kb on - strand, within HGI48_RS02690at 581.066 kb on + strand, within HGI48_RS02690at 581.067 kb on - strand, within HGI48_RS02690at 581.067 kb on - strand, within HGI48_RS02690at 581.067 kb on - strand, within HGI48_RS02690at 581.067 kb on - strand, within HGI48_RS02690at 581.174 kb on + strand, within HGI48_RS02690at 581.212 kb on + strand, within HGI48_RS02690at 581.212 kb on + strand, within HGI48_RS02690at 581.213 kb on - strand, within HGI48_RS02690at 581.213 kb on - strand, within HGI48_RS02690at 581.213 kb on - strandat 581.213 kb on - strand, within HGI48_RS02690at 581.283 kb on + strand, within HGI48_RS02690at 581.283 kb on + strandat 581.283 kb on + strand, within HGI48_RS02690at 581.284 kb on - strand, within HGI48_RS02690at 581.284 kb on - strand, within HGI48_RS02690at 581.284 kb on - strand, within HGI48_RS02690at 581.284 kb on - strand, within HGI48_RS02690at 581.336 kb on - strand, within HGI48_RS02690at 581.408 kb on + strandat 581.440 kb on + strand, within HGI48_RS02690at 581.440 kb on + strand, within HGI48_RS02690at 581.441 kb on - strand, within HGI48_RS02690at 581.496 kb on - strand, within HGI48_RS02690at 581.514 kb on + strand, within HGI48_RS02690at 581.514 kb on + strand, within HGI48_RS02690at 581.514 kb on + strand, within HGI48_RS02690

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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579,131 + +1.8
579,131 + HGI48_RS02680 0.41 -0.6
579,131 + HGI48_RS02680 0.41 +0.1
579,132 - HGI48_RS02680 0.41 +0.5
579,132 - HGI48_RS02680 0.41 -0.9
579,176 + -0.5
579,176 + HGI48_RS02680 0.44 -0.2
579,176 + HGI48_RS02680 0.44 -0.5
579,177 - HGI48_RS02680 0.44 +1.4
579,177 - HGI48_RS02680 0.44 -0.2
579,177 - HGI48_RS02680 0.44 -0.5
579,330 + -0.0
579,331 - HGI48_RS02680 0.53 +1.4
579,331 - HGI48_RS02680 0.53 +0.2
579,333 - HGI48_RS02680 0.53 -0.2
579,393 - +1.9
579,393 - HGI48_RS02680 0.56 +0.1
579,393 - HGI48_RS02680 0.56 -2.3
579,393 - HGI48_RS02680 0.56 +0.2
579,458 + HGI48_RS02680 0.60 +0.3
579,459 - HGI48_RS02680 0.60 -1.0
579,459 - HGI48_RS02680 0.60 -1.3
579,482 + HGI48_RS02680 0.61 -1.3
579,482 + HGI48_RS02680 0.61 -0.7
579,482 + HGI48_RS02680 0.61 +0.2
579,482 + HGI48_RS02680 0.61 -0.2
579,483 - HGI48_RS02680 0.61 -2.0
579,483 - HGI48_RS02680 0.61 -0.3
579,483 - HGI48_RS02680 0.61 +0.1
579,483 - HGI48_RS02680 0.61 -1.5
579,560 + HGI48_RS02680 0.66 -0.5
579,561 - HGI48_RS02680 0.66 -1.5
579,597 + HGI48_RS02680 0.68 -0.9
579,644 + HGI48_RS02680 0.71 +0.4
579,644 + HGI48_RS02680 0.71 -1.0
579,644 + HGI48_RS02680 0.71 -2.5
579,644 + HGI48_RS02680 0.71 -0.7
579,644 + HGI48_RS02680 0.71 +0.5
579,645 - HGI48_RS02680 0.71 +0.5
579,645 - HGI48_RS02680 0.71 -0.6
579,645 - HGI48_RS02680 0.71 -1.8
579,767 + HGI48_RS02680 0.78 -0.0
579,767 + HGI48_RS02680 0.78 -0.9
579,768 - HGI48_RS02680 0.78 +0.4
579,768 - HGI48_RS02680 0.78 -0.8
579,837 - HGI48_RS02680 0.82 -1.5
579,841 - HGI48_RS02680 0.82 -0.5
579,910 - HGI48_RS02680 0.86 -1.3
579,910 - HGI48_RS02680 0.86 -0.9
579,947 + HGI48_RS02680 0.88 +0.2
579,947 + HGI48_RS02680 0.88 -0.5
579,947 + HGI48_RS02680 0.88 +0.5
579,948 - +1.5
579,948 - HGI48_RS02680 0.88 -1.6
580,162 + -1.8
580,163 - -0.2
580,271 + HGI48_RS02685 0.36 +0.0
580,271 + HGI48_RS02685 0.36 -0.3
580,271 + HGI48_RS02685 0.36 -1.2
580,272 - HGI48_RS02685 0.37 -1.0
580,307 + HGI48_RS02685 0.46 -0.3
580,307 + HGI48_RS02685 0.46 -0.3
580,307 + HGI48_RS02685 0.46 -0.7
580,307 + HGI48_RS02685 0.46 +1.4
580,308 - HGI48_RS02685 0.46 -0.8
580,345 - HGI48_RS02685 0.56 +0.5
580,428 + HGI48_RS02685 0.77 -0.7
580,428 + HGI48_RS02685 0.77 -0.1
580,428 + HGI48_RS02685 0.77 -0.2
580,428 + HGI48_RS02685 0.77 +0.2
580,428 + HGI48_RS02685 0.77 -0.5
580,429 - HGI48_RS02685 0.78 +1.4
580,429 - HGI48_RS02685 0.78 +0.5
580,429 - HGI48_RS02685 0.78 -0.6
580,429 - HGI48_RS02685 0.78 -2.5
580,432 - HGI48_RS02685 0.78 +0.5
580,432 - HGI48_RS02685 0.78 -0.2
580,450 - +0.5
580,475 + HGI48_RS02685 0.90 +0.1
580,475 + HGI48_RS02685 0.90 -0.8
580,475 + HGI48_RS02685 0.90 +0.2
580,476 - +0.2
580,476 - -0.9
580,476 - -1.9
580,476 - +1.0
580,476 - +1.4
580,476 - -0.2
580,476 - -1.5
580,493 + -0.2
580,493 + +0.5
580,493 + -0.8
580,493 + -0.8
580,493 + -0.9
580,494 - -1.0
580,494 - -0.2
580,494 - +0.4
580,547 + -1.0
580,547 + -2.3
580,547 + +0.2
580,547 + -0.3
580,548 - +0.5
580,548 - -0.2
580,548 - +1.0
580,548 - -0.3
580,548 - -1.0
580,548 - +0.4
580,548 - -0.3
580,548 - +0.2
580,550 - +0.3
580,550 - +0.5
580,571 + -0.5
580,571 + -0.1
580,572 - -0.8
580,572 - +0.8
580,630 + +0.2
580,720 + -2.3
580,720 + +1.3
580,720 + -0.7
580,721 - -0.4
580,721 - +0.2
580,721 - -0.5
580,721 - -1.5
580,897 + HGI48_RS02690 0.21 +0.2
581,007 - HGI48_RS02690 0.29 -1.6
581,066 + HGI48_RS02690 0.33 -1.9
581,067 - HGI48_RS02690 0.34 +1.0
581,067 - HGI48_RS02690 0.34 +0.5
581,067 - HGI48_RS02690 0.34 +0.2
581,067 - HGI48_RS02690 0.34 -1.8
581,174 + HGI48_RS02690 0.42 -1.5
581,212 + HGI48_RS02690 0.45 -1.8
581,212 + HGI48_RS02690 0.45 -1.8
581,213 - HGI48_RS02690 0.45 -0.5
581,213 - HGI48_RS02690 0.45 -0.0
581,213 - +1.5
581,213 - HGI48_RS02690 0.45 +0.4
581,283 + HGI48_RS02690 0.50 -0.4
581,283 + +1.1
581,283 + HGI48_RS02690 0.50 -0.3
581,284 - HGI48_RS02690 0.50 -0.5
581,284 - HGI48_RS02690 0.50 +0.1
581,284 - HGI48_RS02690 0.50 -0.3
581,284 - HGI48_RS02690 0.50 -1.5
581,336 - HGI48_RS02690 0.54 +1.3
581,408 + +0.5
581,440 + HGI48_RS02690 0.62 +0.1
581,440 + HGI48_RS02690 0.62 +0.3
581,441 - HGI48_RS02690 0.62 -1.2
581,496 - HGI48_RS02690 0.66 -0.8
581,514 + HGI48_RS02690 0.68 +0.5
581,514 + HGI48_RS02690 0.68 -0.4
581,514 + HGI48_RS02690 0.68 -0.3

Or see this region's nucleotide sequence