Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02455 and HGI48_RS02460 are separated by 104 nucleotides HGI48_RS02460 and HGI48_RS02465 are separated by 73 nucleotides HGI48_RS02465 and HGI48_RS02470 are separated by 175 nucleotides
HGI48_RS02455: HGI48_RS02455 - iron ABC transporter permease, at 531,264 to 532,262
_RS02455
HGI48_RS02460: HGI48_RS02460 - alkyl hydroperoxide reductase subunit C, at 532,367 to 532,930
_RS02460
HGI48_RS02465: HGI48_RS02465 - alkyl hydroperoxide reductase subunit F, at 533,004 to 534,566
_RS02465
HGI48_RS02470: HGI48_RS02470 - DUF1868 domain-containing protein, at 534,742 to 535,572
_RS02470
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 532.260 kb on + strand at 532.260 kb on + strand at 532.271 kb on + strand at 532.324 kb on + strand at 532.324 kb on + strand at 532.324 kb on + strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.346 kb on - strand at 532.346 kb on - strand at 532.346 kb on - strand at 532.352 kb on + strand at 532.352 kb on + strand at 532.352 kb on + strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.381 kb on + strand at 532.381 kb on + strand at 532.382 kb on - strand at 532.382 kb on - strand at 532.382 kb on - strand at 532.384 kb on + strand at 532.385 kb on - strand at 532.482 kb on - strand, within HGI48_RS02460 at 532.496 kb on - strand, within HGI48_RS02460 at 532.538 kb on + strand, within HGI48_RS02460 at 532.538 kb on + strand, within HGI48_RS02460 at 532.539 kb on - strand, within HGI48_RS02460 at 532.563 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.572 kb on - strand at 532.572 kb on - strand, within HGI48_RS02460 at 532.572 kb on - strand, within HGI48_RS02460 at 532.597 kb on + strand, within HGI48_RS02460 at 532.598 kb on - strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.835 kb on + strand, within HGI48_RS02460 at 532.928 kb on + strand at 532.998 kb on + strand at 532.998 kb on + strand at 533.003 kb on + strand at 533.003 kb on + strand at 533.004 kb on - strand at 533.015 kb on + strand at 533.040 kb on + strand at 533.176 kb on + strand, within HGI48_RS02465 at 533.264 kb on + strand, within HGI48_RS02465 at 533.326 kb on + strand, within HGI48_RS02465 at 533.327 kb on - strand, within HGI48_RS02465 at 533.373 kb on + strand, within HGI48_RS02465 at 533.373 kb on + strand, within HGI48_RS02465 at 533.373 kb on + strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.374 kb on - strand, within HGI48_RS02465 at 533.376 kb on + strand, within HGI48_RS02465 at 533.376 kb on + strand at 533.377 kb on - strand, within HGI48_RS02465 at 533.425 kb on + strand, within HGI48_RS02465 at 533.426 kb on - strand, within HGI48_RS02465 at 533.426 kb on - strand, within HGI48_RS02465 at 533.504 kb on + strand, within HGI48_RS02465 at 533.524 kb on + strand, within HGI48_RS02465 at 533.525 kb on - strand, within HGI48_RS02465 at 533.525 kb on - strand, within HGI48_RS02465 at 533.588 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.641 kb on - strand, within HGI48_RS02465 at 533.691 kb on + strand, within HGI48_RS02465 at 533.691 kb on + strand, within HGI48_RS02465 at 533.775 kb on + strand, within HGI48_RS02465 at 533.775 kb on + strand, within HGI48_RS02465 at 533.776 kb on - strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.841 kb on + strand, within HGI48_RS02465 at 533.842 kb on - strand, within HGI48_RS02465 at 533.987 kb on + strand at 534.033 kb on + strand, within HGI48_RS02465 at 534.033 kb on + strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.034 kb on - strand, within HGI48_RS02465 at 534.068 kb on + strand, within HGI48_RS02465 at 534.069 kb on - strand, within HGI48_RS02465 at 534.289 kb on - strand, within HGI48_RS02465 at 534.289 kb on - strand, within HGI48_RS02465 at 534.290 kb on + strand, within HGI48_RS02465 at 534.290 kb on + strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.291 kb on - strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.317 kb on + strand, within HGI48_RS02465 at 534.318 kb on - strand, within HGI48_RS02465 at 534.318 kb on - strand, within HGI48_RS02465 at 534.318 kb on - strand, within HGI48_RS02465 at 534.390 kb on - strand, within HGI48_RS02465 at 534.451 kb on + strand at 534.452 kb on - strand at 534.452 kb on - strand at 534.452 kb on - strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.483 kb on + strand at 534.484 kb on - strand at 534.484 kb on - strand at 534.530 kb on - strand at 534.543 kb on + strand at 534.544 kb on - strand at 534.544 kb on - strand at 534.544 kb on - strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.547 kb on + strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.548 kb on - strand at 534.586 kb on + strand at 534.586 kb on + strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.587 kb on - strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.633 kb on + strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.634 kb on - strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.635 kb on + strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.636 kb on - strand at 534.659 kb on + strand at 534.660 kb on - strand at 534.899 kb on + strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.900 kb on - strand, within HGI48_RS02470 at 534.939 kb on - strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.962 kb on + strand, within HGI48_RS02470 at 534.963 kb on - strand, within HGI48_RS02470 at 534.966 kb on + strand at 534.967 kb on - strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.180 kb on + strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand, within HGI48_RS02470 at 535.181 kb on - strand at 535.181 kb on - strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand, within HGI48_RS02470 at 535.182 kb on + strand at 535.220 kb on - strand, within HGI48_RS02470 at 535.266 kb on - strand, within HGI48_RS02470 at 535.336 kb on - strand, within HGI48_RS02470 at 535.336 kb on - strand, within HGI48_RS02470 at 535.377 kb on + strand, within HGI48_RS02470 at 535.377 kb on + strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.378 kb on - strand, within HGI48_RS02470 at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.518 kb on + strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.519 kb on - strand at 535.523 kb on + strand at 535.523 kb on + strand at 535.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 532,260 + -2.0 532,260 + -2.6 532,271 + +1.1 532,324 + +1.5 532,324 + -0.0 532,324 + +0.4 532,325 - +0.2 532,325 - -0.1 532,325 - -0.0 532,325 - +0.3 532,325 - -2.1 532,325 - +0.3 532,345 + -0.4 532,345 + -0.3 532,345 + +1.1 532,345 + -0.4 532,346 - -0.3 532,346 - -0.8 532,346 - +0.2 532,352 + +0.9 532,352 + +1.4 532,352 + -0.8 532,353 - -0.8 532,353 - -0.1 532,353 - +1.6 532,353 - -1.0 532,381 + -1.1 532,381 + -0.5 532,382 - -2.6 532,382 - -1.8 532,382 - +1.6 532,384 + -0.4 532,385 - +0.6 532,482 - HGI48_RS02460 0.20 +0.1 532,496 - HGI48_RS02460 0.23 +0.5 532,538 + HGI48_RS02460 0.30 -0.9 532,538 + HGI48_RS02460 0.30 -1.6 532,539 - HGI48_RS02460 0.30 +0.2 532,563 + HGI48_RS02460 0.35 +0.2 532,571 + HGI48_RS02460 0.36 -0.2 532,571 + HGI48_RS02460 0.36 -0.2 532,571 + HGI48_RS02460 0.36 +0.6 532,572 - -1.0 532,572 - HGI48_RS02460 0.36 -0.3 532,572 - HGI48_RS02460 0.36 -0.4 532,597 + HGI48_RS02460 0.41 -0.4 532,598 - HGI48_RS02460 0.41 -0.0 532,646 + HGI48_RS02460 0.49 -2.8 532,646 + HGI48_RS02460 0.49 +0.9 532,646 + HGI48_RS02460 0.49 -0.2 532,647 - HGI48_RS02460 0.50 -0.9 532,647 - HGI48_RS02460 0.50 -0.0 532,647 - HGI48_RS02460 0.50 -0.7 532,647 - HGI48_RS02460 0.50 +0.8 532,647 - HGI48_RS02460 0.50 +0.2 532,647 - HGI48_RS02460 0.50 -0.1 532,835 + HGI48_RS02460 0.83 -0.1 532,928 + +0.8 532,998 + +0.9 532,998 + -0.4 533,003 + +0.0 533,003 + -0.3 533,004 - -0.9 533,015 + +1.2 533,040 + +0.6 533,176 + HGI48_RS02465 0.11 +0.4 533,264 + HGI48_RS02465 0.17 +0.1 533,326 + HGI48_RS02465 0.21 +0.2 533,327 - HGI48_RS02465 0.21 +0.8 533,373 + HGI48_RS02465 0.24 -0.4 533,373 + HGI48_RS02465 0.24 +0.2 533,373 + HGI48_RS02465 0.24 -0.3 533,374 - HGI48_RS02465 0.24 -0.1 533,374 - HGI48_RS02465 0.24 +1.2 533,374 - HGI48_RS02465 0.24 +1.2 533,374 - HGI48_RS02465 0.24 +0.3 533,376 + HGI48_RS02465 0.24 -1.2 533,376 + -1.0 533,377 - HGI48_RS02465 0.24 -0.9 533,425 + HGI48_RS02465 0.27 +0.1 533,426 - HGI48_RS02465 0.27 +0.2 533,426 - HGI48_RS02465 0.27 +0.3 533,504 + HGI48_RS02465 0.32 -0.4 533,524 + HGI48_RS02465 0.33 -0.1 533,525 - HGI48_RS02465 0.33 +0.6 533,525 - HGI48_RS02465 0.33 +0.8 533,588 - HGI48_RS02465 0.37 -0.8 533,641 - HGI48_RS02465 0.41 +0.2 533,641 - HGI48_RS02465 0.41 +1.3 533,641 - HGI48_RS02465 0.41 -1.0 533,641 - HGI48_RS02465 0.41 +1.0 533,641 - HGI48_RS02465 0.41 +0.8 533,641 - HGI48_RS02465 0.41 -0.1 533,691 + HGI48_RS02465 0.44 -0.1 533,691 + HGI48_RS02465 0.44 +1.6 533,775 + HGI48_RS02465 0.49 +0.2 533,775 + HGI48_RS02465 0.49 -1.0 533,776 - HGI48_RS02465 0.49 -1.8 533,841 + HGI48_RS02465 0.54 -2.0 533,841 + HGI48_RS02465 0.54 +0.9 533,841 + HGI48_RS02465 0.54 -0.7 533,842 - HGI48_RS02465 0.54 -2.6 533,987 + -0.4 534,033 + HGI48_RS02465 0.66 -1.1 534,033 + HGI48_RS02465 0.66 -0.7 534,034 - HGI48_RS02465 0.66 +0.1 534,034 - HGI48_RS02465 0.66 +0.3 534,034 - HGI48_RS02465 0.66 -1.4 534,034 - HGI48_RS02465 0.66 +0.8 534,068 + HGI48_RS02465 0.68 -2.0 534,069 - HGI48_RS02465 0.68 +1.1 534,289 - HGI48_RS02465 0.82 +0.6 534,289 - HGI48_RS02465 0.82 -2.2 534,290 + HGI48_RS02465 0.82 -1.8 534,290 + HGI48_RS02465 0.82 -0.4 534,291 - HGI48_RS02465 0.82 -1.8 534,291 - HGI48_RS02465 0.82 -1.3 534,291 - HGI48_RS02465 0.82 +0.4 534,291 - HGI48_RS02465 0.82 -0.2 534,291 - HGI48_RS02465 0.82 +0.9 534,291 - HGI48_RS02465 0.82 +1.0 534,317 + HGI48_RS02465 0.84 +0.2 534,317 + HGI48_RS02465 0.84 +0.3 534,317 + HGI48_RS02465 0.84 +1.1 534,317 + HGI48_RS02465 0.84 +0.1 534,318 - HGI48_RS02465 0.84 -1.0 534,318 - HGI48_RS02465 0.84 +0.6 534,318 - HGI48_RS02465 0.84 +0.8 534,390 - HGI48_RS02465 0.89 -3.0 534,451 + +0.4 534,452 - -1.0 534,452 - -1.8 534,452 - +0.1 534,483 + +0.3 534,483 + +0.8 534,483 + -1.0 534,483 + -1.6 534,483 + -1.4 534,484 - -1.8 534,484 - +0.2 534,530 - +0.1 534,543 + -0.2 534,544 - +1.2 534,544 - -0.2 534,544 - +0.8 534,547 + +1.7 534,547 + +1.2 534,547 + -0.7 534,547 + +0.2 534,547 + -2.0 534,548 - -0.0 534,548 - -0.4 534,548 - -0.5 534,548 - +0.8 534,548 - +0.1 534,586 + +0.3 534,586 + -0.0 534,587 - +0.2 534,587 - +3.0 534,587 - -1.0 534,587 - -0.3 534,587 - +1.8 534,633 + -0.1 534,633 + +0.2 534,633 + +0.4 534,633 + -0.4 534,633 + -0.0 534,634 - -1.6 534,634 - -0.2 534,634 - +0.6 534,634 - -0.3 534,634 - -0.4 534,635 + -0.8 534,635 + -0.2 534,635 + +0.9 534,635 + +0.2 534,635 + -0.2 534,635 + -1.4 534,635 + +0.6 534,635 + -2.2 534,635 + -1.0 534,636 - -0.2 534,636 - +0.6 534,636 - -0.8 534,636 - -1.3 534,636 - +0.6 534,636 - -0.3 534,636 - -0.3 534,636 - +0.9 534,636 - +0.3 534,636 - +0.3 534,636 - +0.4 534,636 - -2.0 534,636 - -1.0 534,636 - -2.9 534,636 - -0.3 534,659 + -2.0 534,660 - -0.8 534,899 + HGI48_RS02470 0.19 -1.8 534,900 - HGI48_RS02470 0.19 +0.3 534,900 - HGI48_RS02470 0.19 +0.2 534,900 - HGI48_RS02470 0.19 +0.1 534,939 - HGI48_RS02470 0.24 +0.2 534,962 + HGI48_RS02470 0.26 -0.5 534,962 + HGI48_RS02470 0.26 -0.5 534,962 + HGI48_RS02470 0.26 -0.1 534,962 + HGI48_RS02470 0.26 +2.4 534,962 + HGI48_RS02470 0.26 +0.1 534,962 + HGI48_RS02470 0.26 +0.8 534,962 + HGI48_RS02470 0.26 +0.6 534,962 + HGI48_RS02470 0.26 +0.5 534,963 - HGI48_RS02470 0.27 -0.0 534,966 + -1.0 534,967 - HGI48_RS02470 0.27 +0.6 535,180 + HGI48_RS02470 0.53 +0.6 535,180 + HGI48_RS02470 0.53 +0.3 535,180 + HGI48_RS02470 0.53 -0.8 535,181 - HGI48_RS02470 0.53 +0.3 535,181 - HGI48_RS02470 0.53 -0.8 535,181 - HGI48_RS02470 0.53 -0.8 535,181 - HGI48_RS02470 0.53 -1.4 535,181 - -1.0 535,181 - HGI48_RS02470 0.53 +0.1 535,182 + HGI48_RS02470 0.53 -0.3 535,182 + HGI48_RS02470 0.53 -1.2 535,182 + HGI48_RS02470 0.53 -0.1 535,182 + +1.3 535,220 - HGI48_RS02470 0.58 +0.0 535,266 - HGI48_RS02470 0.63 -0.2 535,336 - HGI48_RS02470 0.71 -0.0 535,336 - HGI48_RS02470 0.71 +0.6 535,377 + HGI48_RS02470 0.76 -1.4 535,377 + HGI48_RS02470 0.76 -1.2 535,378 - HGI48_RS02470 0.77 +0.6 535,378 - HGI48_RS02470 0.77 -0.9 535,378 - +2.0 535,378 - HGI48_RS02470 0.77 +0.8 535,378 - HGI48_RS02470 0.77 -0.1 535,378 - HGI48_RS02470 0.77 -0.6 535,378 - HGI48_RS02470 0.77 +0.6 535,378 - HGI48_RS02470 0.77 -1.8 535,518 + -0.8 535,518 + +0.6 535,518 + +0.1 535,518 + +1.2 535,519 - -1.6 535,519 - -0.0 535,519 - +1.1 535,523 + -0.3 535,523 + -0.2 535,562 - -0.2
Or see this region's nucleotide sequence