Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02445 and HGI48_RS02450 are separated by 16 nucleotides HGI48_RS02450 and HGI48_RS02455 overlap by 4 nucleotides HGI48_RS02455 and HGI48_RS02460 are separated by 104 nucleotides HGI48_RS02460 and HGI48_RS02465 are separated by 73 nucleotides
HGI48_RS02445: HGI48_RS02445 - ATP-binding cassette domain-containing protein, at 529,773 to 530,309
_RS02445
HGI48_RS02450: HGI48_RS02450 - ABC transporter substrate-binding protein, at 530,326 to 531,267
_RS02450
HGI48_RS02455: HGI48_RS02455 - iron ABC transporter permease, at 531,264 to 532,262
_RS02455
HGI48_RS02460: HGI48_RS02460 - alkyl hydroperoxide reductase subunit C, at 532,367 to 532,930
_RS02460
HGI48_RS02465: HGI48_RS02465 - alkyl hydroperoxide reductase subunit F, at 533,004 to 534,566
_RS02465
Position (kb) 531
532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 530.274 kb on + strand at 530.274 kb on + strand at 530.282 kb on + strand at 530.282 kb on + strand at 530.283 kb on - strand at 530.283 kb on - strand at 530.283 kb on - strand at 530.387 kb on + strand at 530.585 kb on - strand, within HGI48_RS02450 at 530.585 kb on - strand, within HGI48_RS02450 at 530.585 kb on - strand at 530.645 kb on - strand at 530.693 kb on - strand, within HGI48_RS02450 at 530.693 kb on - strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.728 kb on - strand at 530.728 kb on - strand, within HGI48_RS02450 at 530.768 kb on + strand, within HGI48_RS02450 at 530.768 kb on + strand at 530.768 kb on + strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.908 kb on + strand, within HGI48_RS02450 at 530.925 kb on + strand, within HGI48_RS02450 at 530.925 kb on + strand, within HGI48_RS02450 at 530.947 kb on + strand, within HGI48_RS02450 at 530.948 kb on - strand, within HGI48_RS02450 at 531.079 kb on + strand, within HGI48_RS02450 at 531.080 kb on - strand, within HGI48_RS02450 at 531.184 kb on + strand at 531.282 kb on + strand at 531.282 kb on + strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.304 kb on + strand at 531.305 kb on - strand at 531.305 kb on - strand at 531.738 kb on - strand, within HGI48_RS02455 at 531.738 kb on - strand, within HGI48_RS02455 at 531.738 kb on - strand at 531.768 kb on + strand, within HGI48_RS02455 at 531.768 kb on + strand, within HGI48_RS02455 at 531.768 kb on + strand, within HGI48_RS02455 at 531.769 kb on - strand, within HGI48_RS02455 at 531.769 kb on - strand, within HGI48_RS02455 at 532.260 kb on + strand at 532.260 kb on + strand at 532.271 kb on + strand at 532.324 kb on + strand at 532.324 kb on + strand at 532.324 kb on + strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.325 kb on - strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.345 kb on + strand at 532.346 kb on - strand at 532.346 kb on - strand at 532.346 kb on - strand at 532.352 kb on + strand at 532.352 kb on + strand at 532.352 kb on + strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.353 kb on - strand at 532.381 kb on + strand at 532.381 kb on + strand at 532.382 kb on - strand at 532.382 kb on - strand at 532.382 kb on - strand at 532.384 kb on + strand at 532.385 kb on - strand at 532.482 kb on - strand, within HGI48_RS02460 at 532.496 kb on - strand, within HGI48_RS02460 at 532.538 kb on + strand, within HGI48_RS02460 at 532.538 kb on + strand, within HGI48_RS02460 at 532.539 kb on - strand, within HGI48_RS02460 at 532.563 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.571 kb on + strand, within HGI48_RS02460 at 532.572 kb on - strand at 532.572 kb on - strand, within HGI48_RS02460 at 532.572 kb on - strand, within HGI48_RS02460 at 532.597 kb on + strand, within HGI48_RS02460 at 532.598 kb on - strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.646 kb on + strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.647 kb on - strand, within HGI48_RS02460 at 532.835 kb on + strand, within HGI48_RS02460 at 532.928 kb on + strand at 532.998 kb on + strand at 532.998 kb on + strand at 533.003 kb on + strand at 533.003 kb on + strand at 533.004 kb on - strand at 533.015 kb on + strand at 533.040 kb on + strand at 533.176 kb on + strand, within HGI48_RS02465
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 530,274 + -1.9 530,274 + +1.1 530,282 + +1.0 530,282 + +0.2 530,283 - -0.8 530,283 - -0.4 530,283 - +0.9 530,387 + -0.4 530,585 - HGI48_RS02450 0.27 -1.0 530,585 - HGI48_RS02450 0.27 -0.4 530,585 - +1.6 530,645 - +1.3 530,693 - HGI48_RS02450 0.39 -1.2 530,693 - HGI48_RS02450 0.39 -0.6 530,727 + HGI48_RS02450 0.43 -0.1 530,727 + HGI48_RS02450 0.43 +0.3 530,727 + HGI48_RS02450 0.43 +0.1 530,728 - +1.3 530,728 - HGI48_RS02450 0.43 -1.7 530,768 + HGI48_RS02450 0.47 -1.2 530,768 + +0.6 530,768 + HGI48_RS02450 0.47 -0.4 530,769 - HGI48_RS02450 0.47 +0.9 530,769 - HGI48_RS02450 0.47 -0.1 530,769 - HGI48_RS02450 0.47 -0.7 530,769 - HGI48_RS02450 0.47 -0.2 530,901 - HGI48_RS02450 0.61 +0.6 530,901 - HGI48_RS02450 0.61 -1.7 530,901 - HGI48_RS02450 0.61 +0.2 530,908 + HGI48_RS02450 0.62 +0.8 530,925 + HGI48_RS02450 0.64 -0.8 530,925 + HGI48_RS02450 0.64 +0.6 530,947 + HGI48_RS02450 0.66 +0.6 530,948 - HGI48_RS02450 0.66 -0.2 531,079 + HGI48_RS02450 0.80 -0.4 531,080 - HGI48_RS02450 0.80 -0.8 531,184 + -0.2 531,282 + +1.0 531,282 + -2.2 531,283 - +0.0 531,283 - +0.9 531,283 - +1.0 531,283 - -0.2 531,304 + -0.2 531,305 - -2.2 531,305 - -0.2 531,738 - HGI48_RS02455 0.47 +0.1 531,738 - HGI48_RS02455 0.47 +0.6 531,738 - +1.8 531,768 + HGI48_RS02455 0.50 +0.7 531,768 + HGI48_RS02455 0.50 +1.0 531,768 + HGI48_RS02455 0.50 -0.4 531,769 - HGI48_RS02455 0.51 +0.0 531,769 - HGI48_RS02455 0.51 -0.7 532,260 + -2.0 532,260 + -2.6 532,271 + +1.1 532,324 + +1.5 532,324 + -0.0 532,324 + +0.4 532,325 - +0.2 532,325 - -0.1 532,325 - -0.0 532,325 - +0.3 532,325 - -2.1 532,325 - +0.3 532,345 + -0.4 532,345 + -0.3 532,345 + +1.1 532,345 + -0.4 532,346 - -0.3 532,346 - -0.8 532,346 - +0.2 532,352 + +0.9 532,352 + +1.4 532,352 + -0.8 532,353 - -0.8 532,353 - -0.1 532,353 - +1.6 532,353 - -1.0 532,381 + -1.1 532,381 + -0.5 532,382 - -2.6 532,382 - -1.8 532,382 - +1.6 532,384 + -0.4 532,385 - +0.6 532,482 - HGI48_RS02460 0.20 +0.1 532,496 - HGI48_RS02460 0.23 +0.5 532,538 + HGI48_RS02460 0.30 -0.9 532,538 + HGI48_RS02460 0.30 -1.6 532,539 - HGI48_RS02460 0.30 +0.2 532,563 + HGI48_RS02460 0.35 +0.2 532,571 + HGI48_RS02460 0.36 -0.2 532,571 + HGI48_RS02460 0.36 -0.2 532,571 + HGI48_RS02460 0.36 +0.6 532,572 - -1.0 532,572 - HGI48_RS02460 0.36 -0.3 532,572 - HGI48_RS02460 0.36 -0.4 532,597 + HGI48_RS02460 0.41 -0.4 532,598 - HGI48_RS02460 0.41 -0.0 532,646 + HGI48_RS02460 0.49 -2.8 532,646 + HGI48_RS02460 0.49 +0.9 532,646 + HGI48_RS02460 0.49 -0.2 532,647 - HGI48_RS02460 0.50 -0.9 532,647 - HGI48_RS02460 0.50 -0.0 532,647 - HGI48_RS02460 0.50 -0.7 532,647 - HGI48_RS02460 0.50 +0.8 532,647 - HGI48_RS02460 0.50 +0.2 532,647 - HGI48_RS02460 0.50 -0.1 532,835 + HGI48_RS02460 0.83 -0.1 532,928 + +0.8 532,998 + +0.9 532,998 + -0.4 533,003 + +0.0 533,003 + -0.3 533,004 - -0.9 533,015 + +1.2 533,040 + +0.6 533,176 + HGI48_RS02465 0.11 +0.4
Or see this region's nucleotide sequence