Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02430 and HGI48_RS02435 are separated by 405 nucleotides HGI48_RS02435 and HGI48_RS02440 are separated by 31 nucleotides HGI48_RS02440 and HGI48_RS02445 are separated by 261 nucleotides
HGI48_RS02430: HGI48_RS02430 - Tar ligand binding domain-containing protein, at 525,944 to 527,662
_RS02430
HGI48_RS02435: HGI48_RS02435 - amidohydrolase, at 528,068 to 529,237
_RS02435
HGI48_RS02440: HGI48_RS02440 - hypothetical protein, at 529,269 to 529,511
_RS02440
HGI48_RS02445: HGI48_RS02445 - ATP-binding cassette domain-containing protein, at 529,773 to 530,309
_RS02445
Position (kb) 528
529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 527.232 kb on + strand at 527.232 kb on + strand, within HGI48_RS02430 at 527.232 kb on + strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand at 527.413 kb on + strand, within HGI48_RS02430 at 527.413 kb on + strand, within HGI48_RS02430 at 527.413 kb on + strand at 527.420 kb on - strand, within HGI48_RS02430 at 527.420 kb on - strand, within HGI48_RS02430 at 527.696 kb on + strand at 527.702 kb on + strand at 527.702 kb on + strand at 527.703 kb on - strand at 527.703 kb on - strand at 527.703 kb on - strand at 527.747 kb on - strand at 527.780 kb on + strand at 527.781 kb on - strand at 527.781 kb on - strand at 527.815 kb on - strand at 527.846 kb on + strand at 527.847 kb on - strand at 527.847 kb on - strand at 527.848 kb on + strand at 527.849 kb on - strand at 527.851 kb on + strand at 527.851 kb on + strand at 527.852 kb on - strand at 527.862 kb on + strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.958 kb on + strand at 527.959 kb on - strand at 527.959 kb on - strand at 528.092 kb on - strand at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.404 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.439 kb on - strand, within HGI48_RS02435 at 528.529 kb on + strand, within HGI48_RS02435 at 528.529 kb on + strand at 528.529 kb on + strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.533 kb on + strand at 528.534 kb on - strand, within HGI48_RS02435 at 528.534 kb on - strand, within HGI48_RS02435 at 528.811 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand at 528.882 kb on - strand, within HGI48_RS02435 at 528.882 kb on - strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.913 kb on - strand at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand at 529.065 kb on - strand, within HGI48_RS02435 at 529.065 kb on - strand, within HGI48_RS02435 at 529.072 kb on - strand, within HGI48_RS02435 at 529.072 kb on - strand, within HGI48_RS02435 at 529.091 kb on + strand, within HGI48_RS02435 at 529.091 kb on + strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.148 kb on + strand at 529.157 kb on - strand at 529.238 kb on + strand at 529.239 kb on - strand at 529.239 kb on - strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.270 kb on + strand at 529.271 kb on - strand at 529.281 kb on - strand at 529.281 kb on - strand at 529.525 kb on + strand at 529.525 kb on + strand at 529.525 kb on + strand at 529.526 kb on - strand at 529.526 kb on - strand at 529.526 kb on - strand at 529.537 kb on + strand at 529.538 kb on - strand at 529.538 kb on - strand at 529.538 kb on - strand at 529.550 kb on - strand at 529.550 kb on - strand at 529.638 kb on + strand at 529.638 kb on + strand at 529.638 kb on + strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.710 kb on + strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.714 kb on + strand at 529.715 kb on - strand at 529.804 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.814 kb on - strand at 529.814 kb on - strand at 529.814 kb on - strand at 529.831 kb on + strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.840 kb on + strand at 529.841 kb on - strand, within HGI48_RS02445 at 529.849 kb on + strand at 529.849 kb on + strand at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand at 529.849 kb on + strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.858 kb on + strand at 529.867 kb on + strand, within HGI48_RS02445 at 529.867 kb on + strand, within HGI48_RS02445 at 529.867 kb on + strand, within HGI48_RS02445 at 529.868 kb on - strand, within HGI48_RS02445 at 529.868 kb on - strand, within HGI48_RS02445 at 529.876 kb on + strand, within HGI48_RS02445 at 529.991 kb on + strand, within HGI48_RS02445 at 529.992 kb on - strand, within HGI48_RS02445 at 529.992 kb on - strand, within HGI48_RS02445 at 530.051 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.189 kb on + strand, within HGI48_RS02445
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 527,232 + -1.0 527,232 + HGI48_RS02430 0.75 -0.0 527,232 + HGI48_RS02430 0.75 +0.7 527,233 - HGI48_RS02430 0.75 -0.4 527,233 - HGI48_RS02430 0.75 -0.2 527,233 - HGI48_RS02430 0.75 -0.2 527,233 - HGI48_RS02430 0.75 -2.4 527,233 - HGI48_RS02430 0.75 +0.1 527,233 - +2.9 527,413 + HGI48_RS02430 0.85 -0.6 527,413 + HGI48_RS02430 0.85 -1.4 527,413 + +0.6 527,420 - HGI48_RS02430 0.86 +0.1 527,420 - HGI48_RS02430 0.86 +0.7 527,696 + -0.3 527,702 + +0.3 527,702 + -2.0 527,703 - -2.4 527,703 - +0.2 527,703 - -0.8 527,747 - -1.8 527,780 + +0.6 527,781 - -1.4 527,781 - -0.6 527,815 - -1.0 527,846 + -0.7 527,847 - +1.6 527,847 - -1.6 527,848 + +0.9 527,849 - -0.0 527,851 + -2.2 527,851 + -0.1 527,852 - +0.8 527,862 + -0.2 527,863 - +0.5 527,863 - -0.5 527,863 - -0.3 527,863 - -0.4 527,863 - -0.2 527,906 + -1.4 527,906 + -0.2 527,906 + -0.8 527,906 + -1.5 527,907 - +0.2 527,907 - +0.8 527,907 - -0.1 527,907 - -0.2 527,921 + +0.3 527,921 + -0.4 527,921 + -1.8 527,921 + -0.2 527,921 + +0.4 527,921 + -1.6 527,921 + -0.3 527,922 - -0.1 527,922 - -0.8 527,922 - +0.6 527,922 - +0.7 527,935 + +0.4 527,935 + -0.8 527,935 + -0.1 527,935 + -1.0 527,935 + -1.0 527,935 + -0.4 527,936 - +0.2 527,936 - +2.0 527,936 - +0.3 527,936 - -0.8 527,936 - -0.4 527,936 - -0.9 527,936 - +0.6 527,936 - -0.1 527,958 + +1.3 527,959 - -1.4 527,959 - +0.4 528,092 - -0.1 528,349 + HGI48_RS02435 0.24 -0.4 528,349 + HGI48_RS02435 0.24 +0.6 528,349 + HGI48_RS02435 0.24 +0.2 528,349 + HGI48_RS02435 0.24 -0.5 528,349 + HGI48_RS02435 0.24 -0.5 528,349 + HGI48_RS02435 0.24 +0.2 528,349 + HGI48_RS02435 0.24 -1.8 528,349 + HGI48_RS02435 0.24 -1.4 528,349 + HGI48_RS02435 0.24 -0.7 528,349 + HGI48_RS02435 0.24 +0.9 528,350 - HGI48_RS02435 0.24 -0.3 528,350 - HGI48_RS02435 0.24 -1.8 528,350 - HGI48_RS02435 0.24 +1.9 528,350 - HGI48_RS02435 0.24 -0.2 528,350 - HGI48_RS02435 0.24 -0.4 528,404 + HGI48_RS02435 0.29 -0.1 528,438 + HGI48_RS02435 0.32 +1.4 528,438 + HGI48_RS02435 0.32 -0.4 528,438 + HGI48_RS02435 0.32 -0.3 528,439 - HGI48_RS02435 0.32 -0.6 528,529 + HGI48_RS02435 0.39 +1.7 528,529 + +2.4 528,529 + HGI48_RS02435 0.39 +0.2 528,530 - HGI48_RS02435 0.39 -0.2 528,530 - HGI48_RS02435 0.39 -2.2 528,530 - HGI48_RS02435 0.39 -1.4 528,533 + +1.3 528,534 - HGI48_RS02435 0.40 -1.0 528,534 - HGI48_RS02435 0.40 +0.2 528,811 + HGI48_RS02435 0.64 -0.7 528,881 + HGI48_RS02435 0.69 -0.6 528,881 + HGI48_RS02435 0.69 -1.3 528,881 + +0.6 528,882 - HGI48_RS02435 0.70 -0.2 528,882 - HGI48_RS02435 0.70 +0.8 528,912 + HGI48_RS02435 0.72 +0.3 528,912 + HGI48_RS02435 0.72 -2.8 528,912 + HGI48_RS02435 0.72 -0.2 528,912 + HGI48_RS02435 0.72 +0.2 528,913 - +2.0 529,064 + HGI48_RS02435 0.85 -1.3 529,064 + HGI48_RS02435 0.85 +0.2 529,064 + HGI48_RS02435 0.85 -0.4 529,064 + +2.2 529,065 - HGI48_RS02435 0.85 +1.1 529,065 - HGI48_RS02435 0.85 +0.3 529,072 - HGI48_RS02435 0.86 -0.2 529,072 - HGI48_RS02435 0.86 +0.2 529,091 + HGI48_RS02435 0.87 -0.0 529,091 + HGI48_RS02435 0.87 +0.2 529,092 - HGI48_RS02435 0.88 -0.8 529,092 - HGI48_RS02435 0.88 -2.8 529,092 - HGI48_RS02435 0.88 -0.5 529,148 + -0.2 529,157 - -0.3 529,238 + +0.0 529,239 - -0.1 529,239 - +0.9 529,266 + +0.0 529,266 + -0.1 529,266 + +0.3 529,266 + -2.2 529,266 + -0.4 529,266 + -1.6 529,266 + -1.1 529,266 + -1.4 529,266 + +0.3 529,266 + -0.1 529,266 + +1.8 529,267 - +0.2 529,267 - +1.8 529,267 - -0.4 529,267 - +0.3 529,267 - +1.6 529,267 - +0.1 529,270 + +0.7 529,271 - -0.4 529,281 - +0.8 529,281 - -0.6 529,525 + +0.6 529,525 + +1.0 529,525 + -0.7 529,526 - +0.2 529,526 - +0.2 529,526 - -0.8 529,537 + +1.6 529,538 - +0.1 529,538 - -0.3 529,538 - +0.1 529,550 - -2.2 529,550 - +0.9 529,638 + +0.5 529,638 + -1.0 529,638 + -1.0 529,639 - -0.0 529,639 - +0.7 529,639 - -0.6 529,639 - -0.3 529,710 + -1.2 529,711 - -1.4 529,711 - -0.8 529,711 - +0.2 529,711 - -0.9 529,711 - -0.4 529,714 + +0.8 529,715 - -0.2 529,804 + +3.9 529,813 + +2.4 529,813 + +0.1 529,813 + -0.1 529,813 + +1.2 529,814 - -0.7 529,814 - +0.1 529,814 - -1.8 529,831 + HGI48_RS02445 0.11 -0.8 529,832 - HGI48_RS02445 0.11 -2.2 529,832 - HGI48_RS02445 0.11 -2.4 529,832 - HGI48_RS02445 0.11 -0.4 529,832 - HGI48_RS02445 0.11 -0.7 529,832 - HGI48_RS02445 0.11 -0.3 529,832 - HGI48_RS02445 0.11 -0.1 529,832 - HGI48_RS02445 0.11 +0.2 529,832 - HGI48_RS02445 0.11 -2.2 529,832 - HGI48_RS02445 0.11 -0.2 529,840 + +1.0 529,841 - HGI48_RS02445 0.13 -0.7 529,849 + +2.8 529,849 + +0.6 529,849 + HGI48_RS02445 0.14 +0.1 529,849 + HGI48_RS02445 0.14 -1.0 529,849 + HGI48_RS02445 0.14 -0.1 529,849 + -0.4 529,849 + HGI48_RS02445 0.14 -0.8 529,850 - HGI48_RS02445 0.14 +0.1 529,850 - HGI48_RS02445 0.14 +1.1 529,850 - HGI48_RS02445 0.14 +0.9 529,850 - HGI48_RS02445 0.14 -0.8 529,858 + +0.6 529,867 + HGI48_RS02445 0.18 -0.3 529,867 + HGI48_RS02445 0.18 -0.8 529,867 + HGI48_RS02445 0.18 -0.2 529,868 - HGI48_RS02445 0.18 -0.4 529,868 - HGI48_RS02445 0.18 +1.4 529,876 + HGI48_RS02445 0.19 +0.6 529,991 + HGI48_RS02445 0.41 -1.6 529,992 - HGI48_RS02445 0.41 -0.4 529,992 - HGI48_RS02445 0.41 -0.1 530,051 - HGI48_RS02445 0.52 +0.8 530,054 - +2.9 530,054 - HGI48_RS02445 0.52 +0.1 530,054 - HGI48_RS02445 0.52 -0.4 530,054 - HGI48_RS02445 0.52 -0.1 530,054 - HGI48_RS02445 0.52 -0.4 530,054 - HGI48_RS02445 0.52 +0.1 530,189 + HGI48_RS02445 0.77 -0.2
Or see this region's nucleotide sequence