Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02385 and HGI48_RS02390 are separated by 129 nucleotides HGI48_RS02390 and HGI48_RS02395 are separated by 15 nucleotides HGI48_RS02395 and HGI48_RS02400 are separated by 376 nucleotides
HGI48_RS02385: HGI48_RS02385 - phosphoserine phosphatase, at 516,997 to 517,974
_RS02385
HGI48_RS02390: HGI48_RS02390 - YtjB family periplasmic protein, at 518,104 to 518,784
_RS02390
HGI48_RS02395: HGI48_RS02395 - trans-aconitate 2-methyltransferase, at 518,800 to 519,576
_RS02395
HGI48_RS02400: HGI48_RS02400 - peptide chain release factor 3, at 519,953 to 521,542
_RS02400
Position (kb) 518
519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 517.817 kb on - strand, within HGI48_RS02385 at 517.819 kb on + strand, within HGI48_RS02385 at 517.819 kb on + strand, within HGI48_RS02385 at 517.820 kb on - strand, within HGI48_RS02385 at 517.820 kb on - strand, within HGI48_RS02385 at 517.823 kb on + strand, within HGI48_RS02385 at 517.823 kb on + strand, within HGI48_RS02385 at 517.824 kb on - strand, within HGI48_RS02385 at 517.824 kb on - strand, within HGI48_RS02385 at 517.824 kb on - strand, within HGI48_RS02385 at 517.824 kb on - strand, within HGI48_RS02385 at 517.844 kb on + strand, within HGI48_RS02385 at 517.844 kb on + strand, within HGI48_RS02385 at 517.845 kb on - strand, within HGI48_RS02385 at 517.874 kb on + strand, within HGI48_RS02385 at 517.955 kb on + strand at 517.956 kb on - strand at 517.956 kb on - strand at 517.979 kb on + strand at 517.979 kb on + strand at 517.979 kb on + strand at 517.980 kb on - strand at 517.983 kb on + strand at 517.984 kb on - strand at 517.984 kb on - strand at 517.984 kb on - strand at 518.046 kb on + strand at 518.047 kb on - strand at 518.047 kb on - strand at 518.098 kb on - strand at 518.098 kb on - strand at 518.098 kb on - strand at 518.133 kb on - strand at 518.133 kb on - strand at 518.133 kb on - strand at 518.133 kb on - strand at 518.183 kb on + strand, within HGI48_RS02390 at 518.197 kb on + strand, within HGI48_RS02390 at 518.198 kb on - strand, within HGI48_RS02390 at 518.198 kb on - strand, within HGI48_RS02390 at 518.378 kb on + strand, within HGI48_RS02390 at 518.379 kb on - strand, within HGI48_RS02390 at 518.379 kb on - strand, within HGI48_RS02390 at 518.379 kb on - strand, within HGI48_RS02390 at 518.379 kb on - strand at 518.380 kb on + strand, within HGI48_RS02390 at 518.471 kb on - strand, within HGI48_RS02390 at 518.505 kb on + strand, within HGI48_RS02390 at 518.505 kb on + strand, within HGI48_RS02390 at 518.505 kb on + strand at 518.535 kb on + strand, within HGI48_RS02390 at 518.635 kb on - strand, within HGI48_RS02390 at 518.689 kb on + strand, within HGI48_RS02390 at 518.689 kb on + strand, within HGI48_RS02390 at 518.690 kb on - strand, within HGI48_RS02390 at 518.690 kb on - strand, within HGI48_RS02390 at 518.767 kb on - strand at 518.794 kb on - strand at 518.837 kb on + strand at 518.838 kb on - strand at 518.979 kb on + strand, within HGI48_RS02395 at 518.979 kb on + strand, within HGI48_RS02395 at 518.979 kb on + strand, within HGI48_RS02395 at 518.980 kb on - strand, within HGI48_RS02395 at 518.980 kb on - strand at 519.008 kb on + strand, within HGI48_RS02395 at 519.008 kb on + strand, within HGI48_RS02395 at 519.008 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.062 kb on + strand, within HGI48_RS02395 at 519.063 kb on - strand, within HGI48_RS02395 at 519.065 kb on + strand, within HGI48_RS02395 at 519.284 kb on + strand, within HGI48_RS02395 at 519.285 kb on - strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.343 kb on - strand, within HGI48_RS02395 at 519.551 kb on + strand at 519.591 kb on + strand at 519.608 kb on + strand at 519.608 kb on + strand at 519.608 kb on + strand at 519.621 kb on + strand at 519.622 kb on - strand at 519.622 kb on - strand at 519.622 kb on - strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.630 kb on - strand at 519.630 kb on - strand at 519.630 kb on - strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.733 kb on - strand at 519.733 kb on - strand at 519.733 kb on - strand at 519.744 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.749 kb on - strand at 519.761 kb on + strand at 519.862 kb on + strand at 519.862 kb on + strand at 519.880 kb on + strand at 519.880 kb on + strand at 519.935 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 517,817 - HGI48_RS02385 0.84 -1.4 517,819 + HGI48_RS02385 0.84 -0.0 517,819 + HGI48_RS02385 0.84 -0.4 517,820 - HGI48_RS02385 0.84 +0.6 517,820 - HGI48_RS02385 0.84 -2.0 517,823 + HGI48_RS02385 0.84 +0.4 517,823 + HGI48_RS02385 0.84 +0.3 517,824 - HGI48_RS02385 0.85 -0.4 517,824 - HGI48_RS02385 0.85 +0.1 517,824 - HGI48_RS02385 0.85 +0.6 517,824 - HGI48_RS02385 0.85 -0.1 517,844 + HGI48_RS02385 0.87 -0.4 517,844 + HGI48_RS02385 0.87 -0.1 517,845 - HGI48_RS02385 0.87 +0.4 517,874 + HGI48_RS02385 0.90 -2.4 517,955 + -0.3 517,956 - +1.3 517,956 - +3.4 517,979 + -1.8 517,979 + +1.2 517,979 + -0.0 517,980 - -1.6 517,983 + -1.8 517,984 - +0.8 517,984 - +1.2 517,984 - -0.2 518,046 + +1.1 518,047 - +0.1 518,047 - +0.2 518,098 - -2.9 518,098 - +0.9 518,098 - +0.1 518,133 - -0.4 518,133 - +0.6 518,133 - -2.0 518,133 - -0.6 518,183 + HGI48_RS02390 0.12 +0.6 518,197 + HGI48_RS02390 0.14 -1.8 518,198 - HGI48_RS02390 0.14 -0.2 518,198 - HGI48_RS02390 0.14 +1.1 518,378 + HGI48_RS02390 0.40 -0.4 518,379 - HGI48_RS02390 0.40 -0.4 518,379 - HGI48_RS02390 0.40 -1.0 518,379 - HGI48_RS02390 0.40 -2.2 518,379 - +0.6 518,380 + HGI48_RS02390 0.41 +0.6 518,471 - HGI48_RS02390 0.54 +1.9 518,505 + HGI48_RS02390 0.59 +1.2 518,505 + HGI48_RS02390 0.59 -0.4 518,505 + +2.6 518,535 + HGI48_RS02390 0.63 -0.1 518,635 - HGI48_RS02390 0.78 +0.6 518,689 + HGI48_RS02390 0.86 -0.6 518,689 + HGI48_RS02390 0.86 -0.2 518,690 - HGI48_RS02390 0.86 -1.4 518,690 - HGI48_RS02390 0.86 +0.6 518,767 - -0.2 518,794 - +1.6 518,837 + -0.6 518,838 - -1.4 518,979 + HGI48_RS02395 0.23 -0.0 518,979 + HGI48_RS02395 0.23 -1.6 518,979 + HGI48_RS02395 0.23 -1.8 518,980 - HGI48_RS02395 0.23 -1.8 518,980 - +2.1 519,008 + HGI48_RS02395 0.27 +0.7 519,008 + HGI48_RS02395 0.27 -0.2 519,008 + HGI48_RS02395 0.27 -0.2 519,011 + HGI48_RS02395 0.27 +0.6 519,011 + +0.6 519,011 + HGI48_RS02395 0.27 -0.5 519,011 + HGI48_RS02395 0.27 +0.6 519,011 + HGI48_RS02395 0.27 +0.3 519,011 + HGI48_RS02395 0.27 +0.8 519,011 + HGI48_RS02395 0.27 +0.4 519,012 - HGI48_RS02395 0.27 -1.4 519,012 - HGI48_RS02395 0.27 +0.4 519,012 - HGI48_RS02395 0.27 -0.0 519,012 - HGI48_RS02395 0.27 -0.7 519,062 + HGI48_RS02395 0.34 -0.7 519,063 - HGI48_RS02395 0.34 +0.1 519,065 + HGI48_RS02395 0.34 -0.3 519,284 + HGI48_RS02395 0.62 +0.0 519,285 - HGI48_RS02395 0.62 +0.0 519,342 + HGI48_RS02395 0.70 -0.3 519,342 + HGI48_RS02395 0.70 -1.0 519,342 + HGI48_RS02395 0.70 -1.0 519,343 - HGI48_RS02395 0.70 -1.4 519,551 + +1.6 519,591 + -1.0 519,608 + -1.0 519,608 + +0.1 519,608 + -2.0 519,621 + +1.0 519,622 - -0.4 519,622 - +0.1 519,622 - +0.8 519,629 + -0.6 519,629 + +0.4 519,629 + -0.4 519,629 + -0.2 519,630 - -0.2 519,630 - +2.7 519,630 - -0.4 519,728 + -0.4 519,728 + -0.0 519,728 + +0.3 519,728 + -0.6 519,728 + +1.2 519,728 + +0.6 519,728 + -1.4 519,728 + +1.3 519,728 + -0.9 519,728 + +1.1 519,728 + +0.7 519,728 + -0.2 519,728 + +1.0 519,729 - -0.8 519,729 - -0.7 519,729 - -1.0 519,729 - -1.0 519,732 + -0.4 519,732 + +1.0 519,732 + +0.4 519,732 + -2.2 519,732 + +0.6 519,733 - +0.1 519,733 - -0.4 519,733 - +0.1 519,744 + +1.4 519,748 + -1.2 519,748 + +0.9 519,748 + -1.0 519,748 + -0.0 519,748 + -0.4 519,748 + +0.6 519,748 + +0.6 519,748 + +3.4 519,748 + +0.6 519,748 + +0.6 519,748 + -1.4 519,749 - -2.2 519,761 + -0.7 519,862 + -0.8 519,862 + -0.7 519,880 + +1.6 519,880 + -0.2 519,935 + +1.9
Or see this region's nucleotide sequence