Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01620

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS01610 and HGI48_RS01620 are separated by 599 nucleotidesHGI48_RS01620 and HGI48_RS01625 are separated by 170 nucleotides HGI48_RS01610: HGI48_RS01610 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 355,816 to 356,685 _RS01610 HGI48_RS01620: HGI48_RS01620 - 4,5-DOPA dioxygenase extradiol, at 357,285 to 358,073 _RS01620 HGI48_RS01625: HGI48_RS01625 - glutathionylspermidine synthase family protein, at 358,244 to 359,404 _RS01625 Position (kb) 357 358 359Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 356.321 kb on - strand, within HGI48_RS01610at 356.346 kb on + strand, within HGI48_RS01610at 356.346 kb on + strandat 356.347 kb on - strand, within HGI48_RS01610at 356.386 kb on + strandat 356.386 kb on + strand, within HGI48_RS01610at 356.386 kb on + strand, within HGI48_RS01610at 356.386 kb on + strand, within HGI48_RS01610at 356.386 kb on + strand, within HGI48_RS01610at 356.432 kb on - strand, within HGI48_RS01610at 356.559 kb on + strand, within HGI48_RS01610at 356.559 kb on + strand, within HGI48_RS01610at 356.559 kb on + strand, within HGI48_RS01610at 356.559 kb on + strand, within HGI48_RS01610at 356.559 kb on + strand, within HGI48_RS01610at 356.559 kb on + strand, within HGI48_RS01610at 356.559 kb on + strand, within HGI48_RS01610at 356.560 kb on - strand, within HGI48_RS01610at 356.560 kb on - strand, within HGI48_RS01610at 356.560 kb on - strand, within HGI48_RS01610at 356.560 kb on - strand, within HGI48_RS01610at 356.560 kb on - strand, within HGI48_RS01610at 356.560 kb on - strand, within HGI48_RS01610at 356.560 kb on - strand, within HGI48_RS01610at 356.560 kb on - strand, within HGI48_RS01610at 356.647 kb on + strandat 356.683 kb on + strandat 357.213 kb on - strandat 357.226 kb on + strandat 357.226 kb on + strandat 357.226 kb on + strandat 357.227 kb on - strandat 357.232 kb on + strandat 357.232 kb on + strandat 357.232 kb on + strandat 357.232 kb on + strandat 357.233 kb on - strandat 357.233 kb on - strandat 357.237 kb on + strandat 357.237 kb on + strandat 357.237 kb on + strandat 357.237 kb on + strandat 357.237 kb on + strandat 357.238 kb on - strandat 357.238 kb on - strandat 357.250 kb on + strandat 357.250 kb on + strandat 357.251 kb on - strandat 357.254 kb on + strandat 357.254 kb on + strandat 357.254 kb on + strandat 357.254 kb on + strandat 357.254 kb on + strandat 357.254 kb on + strandat 357.255 kb on - strandat 357.272 kb on + strandat 357.278 kb on + strandat 357.278 kb on + strandat 357.278 kb on + strandat 357.357 kb on + strandat 357.358 kb on - strandat 357.375 kb on - strand, within HGI48_RS01620at 357.432 kb on + strand, within HGI48_RS01620at 357.432 kb on + strand, within HGI48_RS01620at 357.432 kb on + strand, within HGI48_RS01620at 357.432 kb on + strand, within HGI48_RS01620at 357.432 kb on + strand, within HGI48_RS01620at 357.433 kb on - strand, within HGI48_RS01620at 357.433 kb on - strand, within HGI48_RS01620at 357.433 kb on - strand, within HGI48_RS01620at 357.433 kb on - strand, within HGI48_RS01620at 357.434 kb on + strand, within HGI48_RS01620at 357.464 kb on + strand, within HGI48_RS01620at 357.588 kb on + strand, within HGI48_RS01620at 357.588 kb on + strand, within HGI48_RS01620at 357.680 kb on + strand, within HGI48_RS01620at 357.681 kb on - strand, within HGI48_RS01620at 357.681 kb on - strand, within HGI48_RS01620at 357.681 kb on - strand, within HGI48_RS01620at 357.681 kb on - strand, within HGI48_RS01620at 357.681 kb on - strand, within HGI48_RS01620at 357.708 kb on + strand, within HGI48_RS01620at 357.829 kb on - strand, within HGI48_RS01620at 357.914 kb on + strand, within HGI48_RS01620at 357.915 kb on - strand, within HGI48_RS01620at 357.915 kb on - strand, within HGI48_RS01620at 357.975 kb on + strand, within HGI48_RS01620at 357.975 kb on + strand, within HGI48_RS01620at 357.975 kb on + strand, within HGI48_RS01620at 357.975 kb on + strand, within HGI48_RS01620at 357.975 kb on + strand, within HGI48_RS01620at 357.976 kb on - strand, within HGI48_RS01620at 357.976 kb on - strand, within HGI48_RS01620at 357.976 kb on - strand, within HGI48_RS01620at 357.976 kb on - strand, within HGI48_RS01620at 357.976 kb on - strandat 357.976 kb on - strand, within HGI48_RS01620at 357.976 kb on - strand, within HGI48_RS01620at 358.102 kb on + strandat 358.120 kb on + strandat 358.141 kb on + strandat 358.141 kb on + strandat 358.142 kb on - strandat 358.142 kb on - strandat 358.142 kb on - strandat 358.161 kb on - strandat 358.161 kb on - strandat 358.161 kb on - strandat 358.180 kb on - strandat 358.180 kb on - strandat 358.199 kb on - strandat 358.217 kb on + strandat 358.217 kb on + strandat 358.218 kb on - strandat 358.259 kb on - strandat 358.259 kb on - strandat 358.266 kb on + strandat 358.360 kb on + strand, within HGI48_RS01625at 358.361 kb on - strand, within HGI48_RS01625at 358.361 kb on - strand, within HGI48_RS01625at 358.361 kb on - strand, within HGI48_RS01625at 358.361 kb on - strand, within HGI48_RS01625at 358.362 kb on + strandat 358.362 kb on + strand, within HGI48_RS01625at 358.362 kb on + strand, within HGI48_RS01625at 358.362 kb on + strand, within HGI48_RS01625at 358.362 kb on + strand, within HGI48_RS01625at 358.362 kb on + strand, within HGI48_RS01625at 358.362 kb on + strandat 358.362 kb on + strand, within HGI48_RS01625at 358.363 kb on - strand, within HGI48_RS01625at 358.363 kb on - strand, within HGI48_RS01625at 358.363 kb on - strand, within HGI48_RS01625at 358.363 kb on - strandat 358.363 kb on - strand, within HGI48_RS01625at 358.363 kb on - strand, within HGI48_RS01625at 358.461 kb on + strand, within HGI48_RS01625at 358.461 kb on + strand, within HGI48_RS01625at 358.462 kb on - strand, within HGI48_RS01625at 358.469 kb on + strand, within HGI48_RS01625at 358.469 kb on + strand, within HGI48_RS01625at 358.469 kb on + strand, within HGI48_RS01625at 358.469 kb on + strand, within HGI48_RS01625at 358.469 kb on + strand, within HGI48_RS01625at 358.469 kb on + strand, within HGI48_RS01625at 358.469 kb on + strand, within HGI48_RS01625at 358.470 kb on - strand, within HGI48_RS01625at 358.470 kb on - strand, within HGI48_RS01625at 358.470 kb on - strand, within HGI48_RS01625at 358.470 kb on - strand, within HGI48_RS01625at 358.472 kb on - strand, within HGI48_RS01625at 358.509 kb on + strand, within HGI48_RS01625at 358.509 kb on + strand, within HGI48_RS01625at 358.509 kb on + strand, within HGI48_RS01625at 358.509 kb on + strandat 358.510 kb on - strand, within HGI48_RS01625at 358.510 kb on - strand, within HGI48_RS01625at 358.545 kb on + strand, within HGI48_RS01625at 358.546 kb on - strand, within HGI48_RS01625at 358.546 kb on - strand, within HGI48_RS01625at 358.739 kb on + strand, within HGI48_RS01625at 358.740 kb on - strand, within HGI48_RS01625at 358.785 kb on + strand, within HGI48_RS01625at 358.785 kb on + strand, within HGI48_RS01625at 358.786 kb on - strandat 358.786 kb on - strand, within HGI48_RS01625at 358.833 kb on + strand, within HGI48_RS01625at 358.834 kb on - strand, within HGI48_RS01625at 358.834 kb on - strand, within HGI48_RS01625at 358.834 kb on - strand, within HGI48_RS01625at 358.834 kb on - strand, within HGI48_RS01625at 358.843 kb on + strand, within HGI48_RS01625at 358.844 kb on - strand, within HGI48_RS01625at 358.886 kb on - strand, within HGI48_RS01625at 358.886 kb on - strand, within HGI48_RS01625at 358.886 kb on - strand, within HGI48_RS01625at 358.886 kb on - strand, within HGI48_RS01625at 358.914 kb on + strand, within HGI48_RS01625at 358.915 kb on - strand, within HGI48_RS01625at 358.948 kb on + strand, within HGI48_RS01625at 358.949 kb on - strand, within HGI48_RS01625at 358.949 kb on - strandat 358.949 kb on - strand, within HGI48_RS01625at 358.953 kb on + strand, within HGI48_RS01625at 358.953 kb on + strand, within HGI48_RS01625at 358.954 kb on - strand, within HGI48_RS01625at 358.954 kb on - strand, within HGI48_RS01625at 358.954 kb on - strand, within HGI48_RS01625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
356,321 - HGI48_RS01610 0.58 +0.3
356,346 + HGI48_RS01610 0.61 +0.3
356,346 + +0.0
356,347 - HGI48_RS01610 0.61 -1.0
356,386 + +1.2
356,386 + HGI48_RS01610 0.66 +1.1
356,386 + HGI48_RS01610 0.66 +0.4
356,386 + HGI48_RS01610 0.66 -0.7
356,386 + HGI48_RS01610 0.66 +0.7
356,432 - HGI48_RS01610 0.71 -1.2
356,559 + HGI48_RS01610 0.85 -1.2
356,559 + HGI48_RS01610 0.85 -0.1
356,559 + HGI48_RS01610 0.85 -1.5
356,559 + HGI48_RS01610 0.85 -1.0
356,559 + HGI48_RS01610 0.85 -2.0
356,559 + HGI48_RS01610 0.85 -0.8
356,559 + HGI48_RS01610 0.85 -0.0
356,560 - HGI48_RS01610 0.86 -0.6
356,560 - HGI48_RS01610 0.86 -0.2
356,560 - HGI48_RS01610 0.86 -1.2
356,560 - HGI48_RS01610 0.86 -0.7
356,560 - HGI48_RS01610 0.86 +0.0
356,560 - HGI48_RS01610 0.86 -0.7
356,560 - HGI48_RS01610 0.86 -0.4
356,560 - HGI48_RS01610 0.86 +1.5
356,647 + +2.2
356,683 + -0.2
357,213 - +0.8
357,226 + +0.6
357,226 + -0.4
357,226 + +0.4
357,227 - -1.7
357,232 + -0.7
357,232 + -1.8
357,232 + -0.1
357,232 + -0.9
357,233 - +0.2
357,233 - +1.2
357,237 + -0.3
357,237 + -0.1
357,237 + -0.7
357,237 + -0.6
357,237 + +0.3
357,238 - -2.2
357,238 - +1.5
357,250 + +0.6
357,250 + -1.0
357,251 - -0.3
357,254 + +0.9
357,254 + -1.4
357,254 + +0.2
357,254 + -1.4
357,254 + -0.7
357,254 + -0.8
357,255 - -1.1
357,272 + -0.8
357,278 + -0.7
357,278 + -0.3
357,278 + -1.2
357,357 + +1.4
357,358 - -0.4
357,375 - HGI48_RS01620 0.11 +0.9
357,432 + HGI48_RS01620 0.19 -0.1
357,432 + HGI48_RS01620 0.19 -2.6
357,432 + HGI48_RS01620 0.19 +0.7
357,432 + HGI48_RS01620 0.19 -0.2
357,432 + HGI48_RS01620 0.19 -0.4
357,433 - HGI48_RS01620 0.19 -1.2
357,433 - HGI48_RS01620 0.19 -0.2
357,433 - HGI48_RS01620 0.19 +1.3
357,433 - HGI48_RS01620 0.19 +0.1
357,434 + HGI48_RS01620 0.19 -0.3
357,464 + HGI48_RS01620 0.23 +1.1
357,588 + HGI48_RS01620 0.38 +0.0
357,588 + HGI48_RS01620 0.38 -0.6
357,680 + HGI48_RS01620 0.50 -1.7
357,681 - HGI48_RS01620 0.50 +0.4
357,681 - HGI48_RS01620 0.50 +1.3
357,681 - HGI48_RS01620 0.50 -1.0
357,681 - HGI48_RS01620 0.50 +0.0
357,681 - HGI48_RS01620 0.50 +0.9
357,708 + HGI48_RS01620 0.54 -0.6
357,829 - HGI48_RS01620 0.69 -0.7
357,914 + HGI48_RS01620 0.80 -0.2
357,915 - HGI48_RS01620 0.80 -0.2
357,915 - HGI48_RS01620 0.80 +0.8
357,975 + HGI48_RS01620 0.87 +0.0
357,975 + HGI48_RS01620 0.87 -0.5
357,975 + HGI48_RS01620 0.87 +1.4
357,975 + HGI48_RS01620 0.87 -0.4
357,975 + HGI48_RS01620 0.87 -1.7
357,976 - HGI48_RS01620 0.88 -1.0
357,976 - HGI48_RS01620 0.88 -0.4
357,976 - HGI48_RS01620 0.88 +0.9
357,976 - HGI48_RS01620 0.88 -0.0
357,976 - +1.3
357,976 - HGI48_RS01620 0.88 -0.6
357,976 - HGI48_RS01620 0.88 -0.8
358,102 + +0.3
358,120 + -0.0
358,141 + -1.4
358,141 + -3.1
358,142 - -0.4
358,142 - -0.4
358,142 - -0.4
358,161 - -2.0
358,161 - +0.9
358,161 - +0.0
358,180 - +0.0
358,180 - +1.8
358,199 - -1.8
358,217 + +0.3
358,217 + +0.6
358,218 - -1.7
358,259 - +1.2
358,259 - -0.2
358,266 + -1.6
358,360 + HGI48_RS01625 0.10 +0.5
358,361 - HGI48_RS01625 0.10 +0.3
358,361 - HGI48_RS01625 0.10 -0.6
358,361 - HGI48_RS01625 0.10 +0.6
358,361 - HGI48_RS01625 0.10 +1.8
358,362 + +0.6
358,362 + HGI48_RS01625 0.10 +0.6
358,362 + HGI48_RS01625 0.10 -1.3
358,362 + HGI48_RS01625 0.10 -0.4
358,362 + HGI48_RS01625 0.10 +0.6
358,362 + HGI48_RS01625 0.10 +0.3
358,362 + +2.2
358,362 + HGI48_RS01625 0.10 -0.8
358,363 - HGI48_RS01625 0.10 -1.7
358,363 - HGI48_RS01625 0.10 +0.2
358,363 - HGI48_RS01625 0.10 -1.3
358,363 - +1.6
358,363 - HGI48_RS01625 0.10 +0.2
358,363 - HGI48_RS01625 0.10 -1.1
358,461 + HGI48_RS01625 0.19 -1.4
358,461 + HGI48_RS01625 0.19 -1.1
358,462 - HGI48_RS01625 0.19 -0.5
358,469 + HGI48_RS01625 0.19 +0.0
358,469 + HGI48_RS01625 0.19 -0.2
358,469 + HGI48_RS01625 0.19 -1.4
358,469 + HGI48_RS01625 0.19 -0.1
358,469 + HGI48_RS01625 0.19 -1.2
358,469 + HGI48_RS01625 0.19 -2.0
358,469 + HGI48_RS01625 0.19 -0.7
358,470 - HGI48_RS01625 0.19 -1.4
358,470 - HGI48_RS01625 0.19 +0.2
358,470 - HGI48_RS01625 0.19 +0.5
358,470 - HGI48_RS01625 0.19 +0.2
358,472 - HGI48_RS01625 0.20 -2.4
358,509 + HGI48_RS01625 0.23 -0.7
358,509 + HGI48_RS01625 0.23 +0.2
358,509 + HGI48_RS01625 0.23 +0.0
358,509 + +1.0
358,510 - HGI48_RS01625 0.23 -2.0
358,510 - HGI48_RS01625 0.23 -0.6
358,545 + HGI48_RS01625 0.26 -1.0
358,546 - HGI48_RS01625 0.26 +0.3
358,546 - HGI48_RS01625 0.26 +0.4
358,739 + HGI48_RS01625 0.43 +1.3
358,740 - HGI48_RS01625 0.43 +0.7
358,785 + HGI48_RS01625 0.47 -0.7
358,785 + HGI48_RS01625 0.47 +1.0
358,786 - -1.0
358,786 - HGI48_RS01625 0.47 -2.7
358,833 + HGI48_RS01625 0.51 -0.7
358,834 - HGI48_RS01625 0.51 +0.2
358,834 - HGI48_RS01625 0.51 -0.3
358,834 - HGI48_RS01625 0.51 -0.7
358,834 - HGI48_RS01625 0.51 +0.4
358,843 + HGI48_RS01625 0.52 -1.7
358,844 - HGI48_RS01625 0.52 -0.6
358,886 - HGI48_RS01625 0.55 +1.0
358,886 - HGI48_RS01625 0.55 +0.8
358,886 - HGI48_RS01625 0.55 -0.8
358,886 - HGI48_RS01625 0.55 -0.2
358,914 + HGI48_RS01625 0.58 -2.2
358,915 - HGI48_RS01625 0.58 +0.4
358,948 + HGI48_RS01625 0.61 -0.1
358,949 - HGI48_RS01625 0.61 -0.1
358,949 - +0.6
358,949 - HGI48_RS01625 0.61 -1.2
358,953 + HGI48_RS01625 0.61 -0.5
358,953 + HGI48_RS01625 0.61 -1.7
358,954 - HGI48_RS01625 0.61 -1.4
358,954 - HGI48_RS01625 0.61 +0.1
358,954 - HGI48_RS01625 0.61 -1.4

Or see this region's nucleotide sequence