Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01605 and HGI48_RS01610 are separated by 59 nucleotides HGI48_RS01610 and HGI48_RS01620 are separated by 599 nucleotides
HGI48_RS01605: HGI48_RS01605 - penicillin-binding protein activator, at 353,723 to 355,756
_RS01605
HGI48_RS01610: HGI48_RS01610 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 355,816 to 356,685
_RS01610
HGI48_RS01620: HGI48_RS01620 - 4,5-DOPA dioxygenase extradiol, at 357,285 to 358,073
_RS01620
Position (kb) 355
356
357 Strain fitness (log2 ratio) -2
-1
0
1
2 at 355.076 kb on + strand, within HGI48_RS01605 at 355.076 kb on + strand, within HGI48_RS01605 at 355.279 kb on - strand at 355.335 kb on + strand, within HGI48_RS01605 at 355.335 kb on + strand, within HGI48_RS01605 at 355.336 kb on - strand, within HGI48_RS01605 at 355.550 kb on + strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.570 kb on + strand at 355.571 kb on - strand at 355.571 kb on - strand at 355.571 kb on - strand at 355.602 kb on + strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.605 kb on + strand at 355.605 kb on + strand at 355.605 kb on + strand at 355.606 kb on - strand at 355.606 kb on - strand at 355.634 kb on + strand at 355.634 kb on + strand at 355.634 kb on + strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.756 kb on + strand at 355.756 kb on + strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.762 kb on - strand at 355.762 kb on - strand at 355.777 kb on - strand at 355.777 kb on - strand at 355.789 kb on + strand at 355.789 kb on + strand at 355.790 kb on - strand at 355.790 kb on - strand at 355.792 kb on + strand at 355.793 kb on - strand at 355.858 kb on + strand at 355.858 kb on + strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.876 kb on - strand at 355.935 kb on + strand, within HGI48_RS01610 at 355.935 kb on + strand, within HGI48_RS01610 at 355.936 kb on - strand, within HGI48_RS01610 at 355.936 kb on - strand, within HGI48_RS01610 at 355.951 kb on - strand, within HGI48_RS01610 at 355.951 kb on - strand, within HGI48_RS01610 at 355.959 kb on + strand, within HGI48_RS01610 at 355.960 kb on - strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.973 kb on + strand, within HGI48_RS01610 at 355.973 kb on + strand, within HGI48_RS01610 at 355.973 kb on + strand at 355.989 kb on + strand, within HGI48_RS01610 at 356.122 kb on + strand, within HGI48_RS01610 at 356.122 kb on + strand at 356.236 kb on + strand, within HGI48_RS01610 at 356.236 kb on + strand, within HGI48_RS01610 at 356.236 kb on + strand, within HGI48_RS01610 at 356.237 kb on - strand at 356.237 kb on - strand, within HGI48_RS01610 at 356.256 kb on + strand, within HGI48_RS01610 at 356.277 kb on + strand, within HGI48_RS01610 at 356.278 kb on - strand at 356.321 kb on - strand, within HGI48_RS01610 at 356.346 kb on + strand, within HGI48_RS01610 at 356.346 kb on + strand at 356.347 kb on - strand, within HGI48_RS01610 at 356.386 kb on + strand at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.432 kb on - strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.647 kb on + strand at 356.683 kb on + strand at 357.213 kb on - strand at 357.226 kb on + strand at 357.226 kb on + strand at 357.226 kb on + strand at 357.227 kb on - strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.233 kb on - strand at 357.233 kb on - strand at 357.237 kb on + strand at 357.237 kb on + strand at 357.237 kb on + strand at 357.237 kb on + strand at 357.237 kb on + strand at 357.238 kb on - strand at 357.238 kb on - strand at 357.250 kb on + strand at 357.250 kb on + strand at 357.251 kb on - strand at 357.254 kb on + strand at 357.254 kb on + strand at 357.254 kb on + strand at 357.254 kb on + strand at 357.254 kb on + strand at 357.254 kb on + strand at 357.255 kb on - strand at 357.272 kb on + strand at 357.278 kb on + strand at 357.278 kb on + strand at 357.278 kb on + strand at 357.357 kb on + strand at 357.358 kb on - strand at 357.375 kb on - strand, within HGI48_RS01620 at 357.432 kb on + strand, within HGI48_RS01620 at 357.432 kb on + strand, within HGI48_RS01620 at 357.432 kb on + strand, within HGI48_RS01620 at 357.432 kb on + strand, within HGI48_RS01620 at 357.432 kb on + strand, within HGI48_RS01620 at 357.433 kb on - strand, within HGI48_RS01620 at 357.433 kb on - strand, within HGI48_RS01620 at 357.433 kb on - strand, within HGI48_RS01620 at 357.433 kb on - strand, within HGI48_RS01620 at 357.434 kb on + strand, within HGI48_RS01620 at 357.464 kb on + strand, within HGI48_RS01620 at 357.588 kb on + strand, within HGI48_RS01620 at 357.588 kb on + strand, within HGI48_RS01620 at 357.680 kb on + strand, within HGI48_RS01620 at 357.681 kb on - strand, within HGI48_RS01620 at 357.681 kb on - strand, within HGI48_RS01620 at 357.681 kb on - strand, within HGI48_RS01620 at 357.681 kb on - strand, within HGI48_RS01620 at 357.681 kb on - strand, within HGI48_RS01620
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 355,076 + HGI48_RS01605 0.67 -0.6 355,076 + HGI48_RS01605 0.67 +0.9 355,279 - +1.6 355,335 + HGI48_RS01605 0.79 -0.7 355,335 + HGI48_RS01605 0.79 -0.4 355,336 - HGI48_RS01605 0.79 +0.4 355,550 + HGI48_RS01605 0.90 +0.4 355,551 - HGI48_RS01605 0.90 +0.3 355,551 - HGI48_RS01605 0.90 -0.8 355,551 - HGI48_RS01605 0.90 +0.6 355,570 + -0.6 355,571 - +0.3 355,571 - +0.1 355,571 - -1.2 355,602 + +0.4 355,603 - -1.7 355,603 - +0.1 355,603 - -1.7 355,603 - -2.0 355,603 - +2.0 355,605 + +0.3 355,605 + +1.0 355,605 + -0.6 355,606 - +0.3 355,606 - +1.0 355,634 + -2.0 355,634 + +1.0 355,634 + -0.6 355,635 - +0.6 355,635 - +0.2 355,635 - -0.7 355,635 - +0.9 355,635 - +1.8 355,756 + -1.7 355,756 + +1.1 355,757 - +1.9 355,757 - +0.1 355,757 - +1.0 355,757 - +0.9 355,757 - +0.3 355,757 - +0.3 355,757 - +0.1 355,757 - -0.1 355,757 - -0.6 355,757 - +0.6 355,757 - -0.7 355,757 - +0.2 355,757 - +0.6 355,762 - +0.4 355,762 - -1.7 355,777 - +0.0 355,777 - -0.0 355,789 + -0.1 355,789 + +0.2 355,790 - -0.5 355,790 - -2.2 355,792 + -0.4 355,793 - -2.1 355,858 + +0.6 355,858 + -0.5 355,859 - -2.0 355,859 - -0.7 355,859 - -0.1 355,859 - -0.1 355,859 - -0.2 355,859 - -0.6 355,859 - +0.3 355,859 - -0.7 355,859 - -1.5 355,859 - -0.5 355,859 - +0.8 355,859 - -0.4 355,876 - -0.4 355,935 + HGI48_RS01610 0.14 +0.0 355,935 + HGI48_RS01610 0.14 +0.1 355,936 - HGI48_RS01610 0.14 -1.3 355,936 - HGI48_RS01610 0.14 -0.4 355,951 - HGI48_RS01610 0.16 -0.2 355,951 - HGI48_RS01610 0.16 +0.3 355,959 + HGI48_RS01610 0.16 -0.6 355,960 - HGI48_RS01610 0.17 -0.1 355,967 + HGI48_RS01610 0.17 +0.6 355,967 + HGI48_RS01610 0.17 +0.1 355,967 + HGI48_RS01610 0.17 -0.6 355,967 + HGI48_RS01610 0.17 +0.9 355,968 - HGI48_RS01610 0.17 -0.4 355,968 - HGI48_RS01610 0.17 -0.8 355,968 - HGI48_RS01610 0.17 -0.8 355,968 - HGI48_RS01610 0.17 -0.8 355,968 - HGI48_RS01610 0.17 +0.8 355,973 + HGI48_RS01610 0.18 -0.4 355,973 + HGI48_RS01610 0.18 -0.8 355,973 + +1.6 355,989 + HGI48_RS01610 0.20 -0.6 356,122 + HGI48_RS01610 0.35 -0.7 356,122 + +2.2 356,236 + HGI48_RS01610 0.48 -1.5 356,236 + HGI48_RS01610 0.48 +0.8 356,236 + HGI48_RS01610 0.48 +0.3 356,237 - +2.0 356,237 - HGI48_RS01610 0.48 -0.4 356,256 + HGI48_RS01610 0.51 -0.1 356,277 + HGI48_RS01610 0.53 -0.2 356,278 - +1.3 356,321 - HGI48_RS01610 0.58 +0.3 356,346 + HGI48_RS01610 0.61 +0.3 356,346 + +0.0 356,347 - HGI48_RS01610 0.61 -1.0 356,386 + +1.2 356,386 + HGI48_RS01610 0.66 +1.1 356,386 + HGI48_RS01610 0.66 +0.4 356,386 + HGI48_RS01610 0.66 -0.7 356,386 + HGI48_RS01610 0.66 +0.7 356,432 - HGI48_RS01610 0.71 -1.2 356,559 + HGI48_RS01610 0.85 -1.2 356,559 + HGI48_RS01610 0.85 -0.1 356,559 + HGI48_RS01610 0.85 -1.5 356,559 + HGI48_RS01610 0.85 -1.0 356,559 + HGI48_RS01610 0.85 -2.0 356,559 + HGI48_RS01610 0.85 -0.8 356,559 + HGI48_RS01610 0.85 -0.0 356,560 - HGI48_RS01610 0.86 -0.6 356,560 - HGI48_RS01610 0.86 -0.2 356,560 - HGI48_RS01610 0.86 -1.2 356,560 - HGI48_RS01610 0.86 -0.7 356,560 - HGI48_RS01610 0.86 +0.0 356,560 - HGI48_RS01610 0.86 -0.7 356,560 - HGI48_RS01610 0.86 -0.4 356,560 - HGI48_RS01610 0.86 +1.5 356,647 + +2.2 356,683 + -0.2 357,213 - +0.8 357,226 + +0.6 357,226 + -0.4 357,226 + +0.4 357,227 - -1.7 357,232 + -0.7 357,232 + -1.8 357,232 + -0.1 357,232 + -0.9 357,233 - +0.2 357,233 - +1.2 357,237 + -0.3 357,237 + -0.1 357,237 + -0.7 357,237 + -0.6 357,237 + +0.3 357,238 - -2.2 357,238 - +1.5 357,250 + +0.6 357,250 + -1.0 357,251 - -0.3 357,254 + +0.9 357,254 + -1.4 357,254 + +0.2 357,254 + -1.4 357,254 + -0.7 357,254 + -0.8 357,255 - -1.1 357,272 + -0.8 357,278 + -0.7 357,278 + -0.3 357,278 + -1.2 357,357 + +1.4 357,358 - -0.4 357,375 - HGI48_RS01620 0.11 +0.9 357,432 + HGI48_RS01620 0.19 -0.1 357,432 + HGI48_RS01620 0.19 -2.6 357,432 + HGI48_RS01620 0.19 +0.7 357,432 + HGI48_RS01620 0.19 -0.2 357,432 + HGI48_RS01620 0.19 -0.4 357,433 - HGI48_RS01620 0.19 -1.2 357,433 - HGI48_RS01620 0.19 -0.2 357,433 - HGI48_RS01620 0.19 +1.3 357,433 - HGI48_RS01620 0.19 +0.1 357,434 + HGI48_RS01620 0.19 -0.3 357,464 + HGI48_RS01620 0.23 +1.1 357,588 + HGI48_RS01620 0.38 +0.0 357,588 + HGI48_RS01620 0.38 -0.6 357,680 + HGI48_RS01620 0.50 -1.7 357,681 - HGI48_RS01620 0.50 +0.4 357,681 - HGI48_RS01620 0.50 +1.3 357,681 - HGI48_RS01620 0.50 -1.0 357,681 - HGI48_RS01620 0.50 +0.0 357,681 - HGI48_RS01620 0.50 +0.9
Or see this region's nucleotide sequence