Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01590 and HGI48_RS01595 are separated by 10 nucleotides HGI48_RS01595 and HGI48_RS01600 are separated by 37 nucleotides HGI48_RS01600 and HGI48_RS01605 overlap by 4 nucleotides HGI48_RS01605 and HGI48_RS01610 are separated by 59 nucleotides
HGI48_RS01590: HGI48_RS01590 - divisome-associated lipoprotein YraP, at 352,156 to 352,731
_RS01590
HGI48_RS01595: HGI48_RS01595 - DnaA initiator-associating protein DiaA, at 352,742 to 353,332
_RS01595
HGI48_RS01600: HGI48_RS01600 - YraN family protein, at 353,370 to 353,726
_RS01600
HGI48_RS01605: HGI48_RS01605 - penicillin-binding protein activator, at 353,723 to 355,756
_RS01605
HGI48_RS01610: HGI48_RS01610 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 355,816 to 356,685
_RS01610
Position (kb) 353
354
355
356 Strain fitness (log2 ratio) -2
-1
0
1
2 at 352.807 kb on + strand, within HGI48_RS01595 at 352.808 kb on - strand, within HGI48_RS01595 at 352.808 kb on - strand, within HGI48_RS01595 at 352.808 kb on - strand at 353.037 kb on + strand, within HGI48_RS01595 at 353.037 kb on + strand, within HGI48_RS01595 at 353.095 kb on + strand, within HGI48_RS01595 at 353.096 kb on - strand, within HGI48_RS01595 at 353.182 kb on + strand, within HGI48_RS01595 at 353.182 kb on + strand, within HGI48_RS01595 at 353.254 kb on + strand, within HGI48_RS01595 at 353.255 kb on - strand, within HGI48_RS01595 at 353.317 kb on + strand at 353.317 kb on + strand at 353.430 kb on + strand, within HGI48_RS01600 at 353.431 kb on - strand, within HGI48_RS01600 at 353.526 kb on - strand, within HGI48_RS01600 at 353.528 kb on + strand, within HGI48_RS01600 at 353.529 kb on - strand, within HGI48_RS01600 at 353.529 kb on - strand, within HGI48_RS01600 at 353.606 kb on + strand, within HGI48_RS01600 at 353.607 kb on - strand, within HGI48_RS01600 at 353.773 kb on + strand at 353.773 kb on + strand at 353.774 kb on - strand at 353.803 kb on + strand at 353.803 kb on + strand at 353.804 kb on - strand at 353.903 kb on + strand at 353.904 kb on - strand at 354.039 kb on + strand, within HGI48_RS01605 at 354.057 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.139 kb on + strand, within HGI48_RS01605 at 354.140 kb on - strand at 354.140 kb on - strand, within HGI48_RS01605 at 354.140 kb on - strand, within HGI48_RS01605 at 354.140 kb on - strand, within HGI48_RS01605 at 354.140 kb on - strand at 354.141 kb on + strand at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.141 kb on + strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.142 kb on - strand, within HGI48_RS01605 at 354.221 kb on - strand, within HGI48_RS01605 at 354.254 kb on - strand, within HGI48_RS01605 at 354.293 kb on - strand, within HGI48_RS01605 at 354.437 kb on - strand, within HGI48_RS01605 at 354.488 kb on + strand, within HGI48_RS01605 at 354.499 kb on - strand, within HGI48_RS01605 at 354.499 kb on - strand, within HGI48_RS01605 at 354.499 kb on - strand, within HGI48_RS01605 at 354.653 kb on - strand at 354.653 kb on - strand, within HGI48_RS01605 at 354.667 kb on + strand, within HGI48_RS01605 at 354.678 kb on + strand, within HGI48_RS01605 at 354.715 kb on + strand, within HGI48_RS01605 at 355.076 kb on + strand, within HGI48_RS01605 at 355.076 kb on + strand, within HGI48_RS01605 at 355.279 kb on - strand at 355.335 kb on + strand, within HGI48_RS01605 at 355.335 kb on + strand, within HGI48_RS01605 at 355.336 kb on - strand, within HGI48_RS01605 at 355.550 kb on + strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.551 kb on - strand, within HGI48_RS01605 at 355.570 kb on + strand at 355.571 kb on - strand at 355.571 kb on - strand at 355.571 kb on - strand at 355.602 kb on + strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.603 kb on - strand at 355.605 kb on + strand at 355.605 kb on + strand at 355.605 kb on + strand at 355.606 kb on - strand at 355.606 kb on - strand at 355.634 kb on + strand at 355.634 kb on + strand at 355.634 kb on + strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.635 kb on - strand at 355.756 kb on + strand at 355.756 kb on + strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.757 kb on - strand at 355.762 kb on - strand at 355.762 kb on - strand at 355.777 kb on - strand at 355.777 kb on - strand at 355.789 kb on + strand at 355.789 kb on + strand at 355.790 kb on - strand at 355.790 kb on - strand at 355.792 kb on + strand at 355.793 kb on - strand at 355.858 kb on + strand at 355.858 kb on + strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.859 kb on - strand at 355.876 kb on - strand at 355.935 kb on + strand, within HGI48_RS01610 at 355.935 kb on + strand, within HGI48_RS01610 at 355.936 kb on - strand, within HGI48_RS01610 at 355.936 kb on - strand, within HGI48_RS01610 at 355.951 kb on - strand, within HGI48_RS01610 at 355.951 kb on - strand, within HGI48_RS01610 at 355.959 kb on + strand, within HGI48_RS01610 at 355.960 kb on - strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.967 kb on + strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.968 kb on - strand, within HGI48_RS01610 at 355.973 kb on + strand, within HGI48_RS01610 at 355.973 kb on + strand, within HGI48_RS01610 at 355.973 kb on + strand at 355.989 kb on + strand, within HGI48_RS01610 at 356.122 kb on + strand, within HGI48_RS01610 at 356.122 kb on + strand at 356.236 kb on + strand, within HGI48_RS01610 at 356.236 kb on + strand, within HGI48_RS01610 at 356.236 kb on + strand, within HGI48_RS01610 at 356.237 kb on - strand at 356.237 kb on - strand, within HGI48_RS01610 at 356.256 kb on + strand, within HGI48_RS01610 at 356.277 kb on + strand, within HGI48_RS01610 at 356.278 kb on - strand at 356.321 kb on - strand, within HGI48_RS01610 at 356.346 kb on + strand, within HGI48_RS01610 at 356.346 kb on + strand at 356.347 kb on - strand, within HGI48_RS01610 at 356.386 kb on + strand at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.386 kb on + strand, within HGI48_RS01610 at 356.432 kb on - strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.559 kb on + strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.560 kb on - strand, within HGI48_RS01610 at 356.647 kb on + strand at 356.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 352,807 + HGI48_RS01595 0.11 +0.9 352,808 - HGI48_RS01595 0.11 -0.4 352,808 - HGI48_RS01595 0.11 +0.4 352,808 - +1.6 353,037 + HGI48_RS01595 0.50 +0.2 353,037 + HGI48_RS01595 0.50 -0.1 353,095 + HGI48_RS01595 0.60 +0.6 353,096 - HGI48_RS01595 0.60 -0.3 353,182 + HGI48_RS01595 0.74 -1.7 353,182 + HGI48_RS01595 0.74 -0.4 353,254 + HGI48_RS01595 0.87 +0.3 353,255 - HGI48_RS01595 0.87 +0.3 353,317 + +0.0 353,317 + -0.4 353,430 + HGI48_RS01600 0.17 -1.7 353,431 - HGI48_RS01600 0.17 +1.1 353,526 - HGI48_RS01600 0.44 -0.4 353,528 + HGI48_RS01600 0.44 -0.7 353,529 - HGI48_RS01600 0.45 -0.4 353,529 - HGI48_RS01600 0.45 +0.0 353,606 + HGI48_RS01600 0.66 -0.2 353,607 - HGI48_RS01600 0.66 -1.0 353,773 + +0.0 353,773 + +0.8 353,774 - +0.0 353,803 + +0.9 353,803 + +0.3 353,804 - -1.0 353,903 + +0.0 353,904 - -0.7 354,039 + HGI48_RS01605 0.16 -0.7 354,057 + HGI48_RS01605 0.16 -0.7 354,139 + HGI48_RS01605 0.20 +0.6 354,139 + HGI48_RS01605 0.20 -2.4 354,139 + HGI48_RS01605 0.20 -1.2 354,139 + HGI48_RS01605 0.20 -0.6 354,139 + HGI48_RS01605 0.20 +0.0 354,139 + HGI48_RS01605 0.20 -2.4 354,140 - +0.0 354,140 - HGI48_RS01605 0.21 -0.3 354,140 - HGI48_RS01605 0.21 -0.4 354,140 - HGI48_RS01605 0.21 -0.4 354,140 - +0.6 354,141 + -1.0 354,141 + HGI48_RS01605 0.21 -0.8 354,141 + HGI48_RS01605 0.21 +1.1 354,141 + HGI48_RS01605 0.21 +0.8 354,141 + HGI48_RS01605 0.21 -0.6 354,141 + HGI48_RS01605 0.21 -0.5 354,141 + HGI48_RS01605 0.21 -0.4 354,141 + HGI48_RS01605 0.21 +0.8 354,141 + HGI48_RS01605 0.21 +1.3 354,142 - HGI48_RS01605 0.21 +0.0 354,142 - HGI48_RS01605 0.21 -1.0 354,142 - HGI48_RS01605 0.21 +0.6 354,142 - HGI48_RS01605 0.21 +0.7 354,142 - HGI48_RS01605 0.21 -2.0 354,142 - HGI48_RS01605 0.21 -0.6 354,221 - HGI48_RS01605 0.24 -0.4 354,254 - HGI48_RS01605 0.26 +1.3 354,293 - HGI48_RS01605 0.28 -0.3 354,437 - HGI48_RS01605 0.35 +0.1 354,488 + HGI48_RS01605 0.38 -0.6 354,499 - HGI48_RS01605 0.38 -1.3 354,499 - HGI48_RS01605 0.38 +0.2 354,499 - HGI48_RS01605 0.38 -0.5 354,653 - +0.6 354,653 - HGI48_RS01605 0.46 +0.3 354,667 + HGI48_RS01605 0.46 +0.7 354,678 + HGI48_RS01605 0.47 +1.1 354,715 + HGI48_RS01605 0.49 -0.4 355,076 + HGI48_RS01605 0.67 -0.6 355,076 + HGI48_RS01605 0.67 +0.9 355,279 - +1.6 355,335 + HGI48_RS01605 0.79 -0.7 355,335 + HGI48_RS01605 0.79 -0.4 355,336 - HGI48_RS01605 0.79 +0.4 355,550 + HGI48_RS01605 0.90 +0.4 355,551 - HGI48_RS01605 0.90 +0.3 355,551 - HGI48_RS01605 0.90 -0.8 355,551 - HGI48_RS01605 0.90 +0.6 355,570 + -0.6 355,571 - +0.3 355,571 - +0.1 355,571 - -1.2 355,602 + +0.4 355,603 - -1.7 355,603 - +0.1 355,603 - -1.7 355,603 - -2.0 355,603 - +2.0 355,605 + +0.3 355,605 + +1.0 355,605 + -0.6 355,606 - +0.3 355,606 - +1.0 355,634 + -2.0 355,634 + +1.0 355,634 + -0.6 355,635 - +0.6 355,635 - +0.2 355,635 - -0.7 355,635 - +0.9 355,635 - +1.8 355,756 + -1.7 355,756 + +1.1 355,757 - +1.9 355,757 - +0.1 355,757 - +1.0 355,757 - +0.9 355,757 - +0.3 355,757 - +0.3 355,757 - +0.1 355,757 - -0.1 355,757 - -0.6 355,757 - +0.6 355,757 - -0.7 355,757 - +0.2 355,757 - +0.6 355,762 - +0.4 355,762 - -1.7 355,777 - +0.0 355,777 - -0.0 355,789 + -0.1 355,789 + +0.2 355,790 - -0.5 355,790 - -2.2 355,792 + -0.4 355,793 - -2.1 355,858 + +0.6 355,858 + -0.5 355,859 - -2.0 355,859 - -0.7 355,859 - -0.1 355,859 - -0.1 355,859 - -0.2 355,859 - -0.6 355,859 - +0.3 355,859 - -0.7 355,859 - -1.5 355,859 - -0.5 355,859 - +0.8 355,859 - -0.4 355,876 - -0.4 355,935 + HGI48_RS01610 0.14 +0.0 355,935 + HGI48_RS01610 0.14 +0.1 355,936 - HGI48_RS01610 0.14 -1.3 355,936 - HGI48_RS01610 0.14 -0.4 355,951 - HGI48_RS01610 0.16 -0.2 355,951 - HGI48_RS01610 0.16 +0.3 355,959 + HGI48_RS01610 0.16 -0.6 355,960 - HGI48_RS01610 0.17 -0.1 355,967 + HGI48_RS01610 0.17 +0.6 355,967 + HGI48_RS01610 0.17 +0.1 355,967 + HGI48_RS01610 0.17 -0.6 355,967 + HGI48_RS01610 0.17 +0.9 355,968 - HGI48_RS01610 0.17 -0.4 355,968 - HGI48_RS01610 0.17 -0.8 355,968 - HGI48_RS01610 0.17 -0.8 355,968 - HGI48_RS01610 0.17 -0.8 355,968 - HGI48_RS01610 0.17 +0.8 355,973 + HGI48_RS01610 0.18 -0.4 355,973 + HGI48_RS01610 0.18 -0.8 355,973 + +1.6 355,989 + HGI48_RS01610 0.20 -0.6 356,122 + HGI48_RS01610 0.35 -0.7 356,122 + +2.2 356,236 + HGI48_RS01610 0.48 -1.5 356,236 + HGI48_RS01610 0.48 +0.8 356,236 + HGI48_RS01610 0.48 +0.3 356,237 - +2.0 356,237 - HGI48_RS01610 0.48 -0.4 356,256 + HGI48_RS01610 0.51 -0.1 356,277 + HGI48_RS01610 0.53 -0.2 356,278 - +1.3 356,321 - HGI48_RS01610 0.58 +0.3 356,346 + HGI48_RS01610 0.61 +0.3 356,346 + +0.0 356,347 - HGI48_RS01610 0.61 -1.0 356,386 + +1.2 356,386 + HGI48_RS01610 0.66 +1.1 356,386 + HGI48_RS01610 0.66 +0.4 356,386 + HGI48_RS01610 0.66 -0.7 356,386 + HGI48_RS01610 0.66 +0.7 356,432 - HGI48_RS01610 0.71 -1.2 356,559 + HGI48_RS01610 0.85 -1.2 356,559 + HGI48_RS01610 0.85 -0.1 356,559 + HGI48_RS01610 0.85 -1.5 356,559 + HGI48_RS01610 0.85 -1.0 356,559 + HGI48_RS01610 0.85 -2.0 356,559 + HGI48_RS01610 0.85 -0.8 356,559 + HGI48_RS01610 0.85 -0.0 356,560 - HGI48_RS01610 0.86 -0.6 356,560 - HGI48_RS01610 0.86 -0.2 356,560 - HGI48_RS01610 0.86 -1.2 356,560 - HGI48_RS01610 0.86 -0.7 356,560 - HGI48_RS01610 0.86 +0.0 356,560 - HGI48_RS01610 0.86 -0.7 356,560 - HGI48_RS01610 0.86 -0.4 356,560 - HGI48_RS01610 0.86 +1.5 356,647 + +2.2 356,683 + -0.2
Or see this region's nucleotide sequence