Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01585

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01575 and HGI48_RS01580 overlap by 4 nucleotidesHGI48_RS01580 and HGI48_RS01585 are separated by 93 nucleotidesHGI48_RS01585 and HGI48_RS01590 are separated by 145 nucleotidesHGI48_RS01590 and HGI48_RS01595 are separated by 10 nucleotides HGI48_RS01575: HGI48_RS01575 - isoprenoid biosynthesis glyoxalase ElbB, at 349,216 to 349,869 _RS01575 HGI48_RS01580: HGI48_RS01580 - monofunctional biosynthetic peptidoglycan transglycosylase, at 349,866 to 350,615 _RS01580 HGI48_RS01585: HGI48_RS01585 - alginate lyase family protein, at 350,709 to 352,010 _RS01585 HGI48_RS01590: HGI48_RS01590 - divisome-associated lipoprotein YraP, at 352,156 to 352,731 _RS01590 HGI48_RS01595: HGI48_RS01595 - DnaA initiator-associating protein DiaA, at 352,742 to 353,332 _RS01595 Position (kb) 350 351 352 353Strain fitness (log2 ratio) -2 -1 0 1 2at 349.721 kb on + strandat 349.721 kb on + strand, within HGI48_RS01575at 349.721 kb on + strand, within HGI48_RS01575at 349.722 kb on - strand, within HGI48_RS01575at 349.739 kb on + strandat 349.740 kb on - strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.789 kb on + strand, within HGI48_RS01575at 349.790 kb on - strand, within HGI48_RS01575at 350.047 kb on + strand, within HGI48_RS01580at 350.047 kb on + strand, within HGI48_RS01580at 350.048 kb on - strand, within HGI48_RS01580at 350.048 kb on - strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.064 kb on + strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.065 kb on - strand, within HGI48_RS01580at 350.195 kb on + strand, within HGI48_RS01580at 350.195 kb on + strand, within HGI48_RS01580at 350.196 kb on - strand, within HGI48_RS01580at 350.196 kb on - strandat 350.201 kb on + strand, within HGI48_RS01580at 350.201 kb on + strand, within HGI48_RS01580at 350.202 kb on - strand, within HGI48_RS01580at 350.202 kb on - strand, within HGI48_RS01580at 350.355 kb on - strand, within HGI48_RS01580at 350.375 kb on + strandat 350.376 kb on - strand, within HGI48_RS01580at 350.407 kb on + strand, within HGI48_RS01580at 350.407 kb on + strand, within HGI48_RS01580at 350.407 kb on + strand, within HGI48_RS01580at 350.408 kb on - strand, within HGI48_RS01580at 350.408 kb on - strand, within HGI48_RS01580at 350.408 kb on - strand, within HGI48_RS01580at 350.435 kb on + strandat 350.436 kb on - strand, within HGI48_RS01580at 350.436 kb on - strand, within HGI48_RS01580at 350.499 kb on - strand, within HGI48_RS01580at 350.529 kb on + strand, within HGI48_RS01580at 350.530 kb on - strandat 350.610 kb on + strandat 350.633 kb on + strandat 350.634 kb on - strandat 350.634 kb on - strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.707 kb on + strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.708 kb on - strandat 350.802 kb on + strandat 350.802 kb on + strandat 350.802 kb on + strandat 350.802 kb on + strandat 350.803 kb on - strandat 350.803 kb on - strandat 350.806 kb on + strandat 350.806 kb on + strandat 350.806 kb on + strandat 350.806 kb on + strandat 350.806 kb on + strandat 350.812 kb on + strandat 350.837 kb on - strandat 350.913 kb on - strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.915 kb on + strand, within HGI48_RS01585at 350.916 kb on - strand, within HGI48_RS01585at 350.916 kb on - strand, within HGI48_RS01585at 350.916 kb on - strand, within HGI48_RS01585at 350.916 kb on - strand, within HGI48_RS01585at 350.916 kb on - strand, within HGI48_RS01585at 350.936 kb on - strand, within HGI48_RS01585at 350.936 kb on - strandat 350.936 kb on - strand, within HGI48_RS01585at 351.003 kb on + strand, within HGI48_RS01585at 351.003 kb on + strandat 351.117 kb on - strandat 351.127 kb on + strand, within HGI48_RS01585at 351.127 kb on + strand, within HGI48_RS01585at 351.150 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.185 kb on + strand, within HGI48_RS01585at 351.186 kb on - strandat 351.210 kb on - strandat 351.210 kb on - strand, within HGI48_RS01585at 351.227 kb on + strand, within HGI48_RS01585at 351.227 kb on + strand, within HGI48_RS01585at 351.227 kb on + strandat 351.227 kb on + strand, within HGI48_RS01585at 351.227 kb on + strand, within HGI48_RS01585at 351.246 kb on + strand, within HGI48_RS01585at 351.247 kb on - strand, within HGI48_RS01585at 351.405 kb on + strand, within HGI48_RS01585at 351.405 kb on + strand, within HGI48_RS01585at 351.405 kb on + strand, within HGI48_RS01585at 351.406 kb on - strand, within HGI48_RS01585at 351.406 kb on - strand, within HGI48_RS01585at 351.406 kb on - strand, within HGI48_RS01585at 351.461 kb on + strand, within HGI48_RS01585at 351.461 kb on + strand, within HGI48_RS01585at 351.461 kb on + strand, within HGI48_RS01585at 351.462 kb on - strand, within HGI48_RS01585at 351.462 kb on - strand, within HGI48_RS01585at 351.462 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.478 kb on - strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.479 kb on + strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.480 kb on - strand, within HGI48_RS01585at 351.508 kb on - strand, within HGI48_RS01585at 351.628 kb on - strand, within HGI48_RS01585at 351.628 kb on - strand, within HGI48_RS01585at 351.681 kb on + strand, within HGI48_RS01585at 351.682 kb on - strand, within HGI48_RS01585at 351.756 kb on + strand, within HGI48_RS01585at 351.757 kb on - strand, within HGI48_RS01585at 351.785 kb on + strandat 351.785 kb on + strandat 351.786 kb on - strand, within HGI48_RS01585at 351.786 kb on - strand, within HGI48_RS01585at 351.791 kb on + strand, within HGI48_RS01585at 351.792 kb on - strand, within HGI48_RS01585at 351.792 kb on - strand, within HGI48_RS01585at 351.792 kb on - strand, within HGI48_RS01585at 352.045 kb on - strandat 352.157 kb on + strandat 352.157 kb on + strandat 352.167 kb on - strandat 352.363 kb on - strand, within HGI48_RS01590at 352.409 kb on + strandat 352.410 kb on - strand, within HGI48_RS01590at 352.437 kb on + strand, within HGI48_RS01590at 352.540 kb on + strand, within HGI48_RS01590at 352.703 kb on - strandat 352.722 kb on - strandat 352.807 kb on + strand, within HGI48_RS01595at 352.808 kb on - strand, within HGI48_RS01595at 352.808 kb on - strand, within HGI48_RS01595at 352.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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349,721 + +1.8
349,721 + HGI48_RS01575 0.77 +0.2
349,721 + HGI48_RS01575 0.77 -0.0
349,722 - HGI48_RS01575 0.77 -0.7
349,739 + +0.6
349,740 - HGI48_RS01575 0.80 -0.0
349,789 + HGI48_RS01575 0.88 -1.6
349,789 + HGI48_RS01575 0.88 +0.0
349,789 + HGI48_RS01575 0.88 -1.4
349,789 + HGI48_RS01575 0.88 -1.7
349,789 + HGI48_RS01575 0.88 +0.4
349,789 + HGI48_RS01575 0.88 +0.1
349,790 - HGI48_RS01575 0.88 -0.3
350,047 + HGI48_RS01580 0.24 -1.7
350,047 + HGI48_RS01580 0.24 -1.3
350,048 - HGI48_RS01580 0.24 +1.0
350,048 - HGI48_RS01580 0.24 -0.3
350,064 + HGI48_RS01580 0.26 +1.3
350,064 + HGI48_RS01580 0.26 -0.4
350,064 + HGI48_RS01580 0.26 +0.3
350,064 + HGI48_RS01580 0.26 -0.1
350,064 + HGI48_RS01580 0.26 -2.4
350,064 + HGI48_RS01580 0.26 -0.7
350,065 - HGI48_RS01580 0.27 -0.7
350,065 - HGI48_RS01580 0.27 +0.9
350,065 - HGI48_RS01580 0.27 -1.6
350,065 - HGI48_RS01580 0.27 -1.5
350,065 - HGI48_RS01580 0.27 -0.4
350,065 - HGI48_RS01580 0.27 +0.2
350,195 + HGI48_RS01580 0.44 -1.4
350,195 + HGI48_RS01580 0.44 +0.0
350,196 - HGI48_RS01580 0.44 -0.7
350,196 - +1.3
350,201 + HGI48_RS01580 0.45 -0.1
350,201 + HGI48_RS01580 0.45 -0.7
350,202 - HGI48_RS01580 0.45 +0.1
350,202 - HGI48_RS01580 0.45 +0.1
350,355 - HGI48_RS01580 0.65 +0.6
350,375 + +1.2
350,376 - HGI48_RS01580 0.68 -0.4
350,407 + HGI48_RS01580 0.72 -0.4
350,407 + HGI48_RS01580 0.72 +0.6
350,407 + HGI48_RS01580 0.72 -1.0
350,408 - HGI48_RS01580 0.72 +0.3
350,408 - HGI48_RS01580 0.72 -0.1
350,408 - HGI48_RS01580 0.72 -1.4
350,435 + +2.0
350,436 - HGI48_RS01580 0.76 +0.3
350,436 - HGI48_RS01580 0.76 -1.6
350,499 - HGI48_RS01580 0.84 -0.6
350,529 + HGI48_RS01580 0.88 -1.2
350,530 - +1.3
350,610 + -1.4
350,633 + -1.7
350,634 - +0.2
350,634 - +0.2
350,707 + -2.7
350,707 + -1.0
350,707 + -1.1
350,707 + +0.8
350,707 + -0.4
350,707 + -0.7
350,707 + -1.1
350,707 + -1.4
350,707 + -0.1
350,708 - +0.6
350,708 - +0.1
350,708 - -0.1
350,708 - -1.0
350,708 - -0.1
350,708 - +0.3
350,708 - +0.6
350,708 - -0.7
350,802 + +0.2
350,802 + -0.1
350,802 + -1.7
350,802 + +0.4
350,803 - -0.7
350,803 - -1.1
350,806 + +0.0
350,806 + +0.3
350,806 + +0.1
350,806 + +1.7
350,806 + +0.2
350,812 + -1.6
350,837 - +0.1
350,913 - HGI48_RS01585 0.16 +0.0
350,915 + HGI48_RS01585 0.16 -0.1
350,915 + HGI48_RS01585 0.16 +0.9
350,915 + HGI48_RS01585 0.16 -0.6
350,915 + HGI48_RS01585 0.16 +0.2
350,915 + HGI48_RS01585 0.16 -0.6
350,915 + HGI48_RS01585 0.16 +0.0
350,915 + HGI48_RS01585 0.16 +0.7
350,916 - HGI48_RS01585 0.16 +1.2
350,916 - HGI48_RS01585 0.16 +0.6
350,916 - HGI48_RS01585 0.16 -0.2
350,916 - HGI48_RS01585 0.16 -1.1
350,916 - HGI48_RS01585 0.16 -1.7
350,936 - HGI48_RS01585 0.17 +0.3
350,936 - +0.6
350,936 - HGI48_RS01585 0.17 +0.9
351,003 + HGI48_RS01585 0.23 +0.6
351,003 + -1.0
351,117 - +0.6
351,127 + HGI48_RS01585 0.32 -0.2
351,127 + HGI48_RS01585 0.32 +0.1
351,150 + HGI48_RS01585 0.34 -0.5
351,185 + HGI48_RS01585 0.37 +0.3
351,185 + HGI48_RS01585 0.37 +0.3
351,185 + HGI48_RS01585 0.37 -1.6
351,185 + HGI48_RS01585 0.37 -1.0
351,185 + HGI48_RS01585 0.37 -1.4
351,185 + HGI48_RS01585 0.37 -0.7
351,185 + HGI48_RS01585 0.37 -1.4
351,185 + HGI48_RS01585 0.37 -0.9
351,186 - +2.4
351,210 - -1.0
351,210 - HGI48_RS01585 0.38 -1.5
351,227 + HGI48_RS01585 0.40 -0.4
351,227 + HGI48_RS01585 0.40 -0.5
351,227 + +1.9
351,227 + HGI48_RS01585 0.40 -0.4
351,227 + HGI48_RS01585 0.40 +0.1
351,246 + HGI48_RS01585 0.41 -0.4
351,247 - HGI48_RS01585 0.41 +0.9
351,405 + HGI48_RS01585 0.53 +1.0
351,405 + HGI48_RS01585 0.53 +0.6
351,405 + HGI48_RS01585 0.53 -0.4
351,406 - HGI48_RS01585 0.54 -0.2
351,406 - HGI48_RS01585 0.54 -0.1
351,406 - HGI48_RS01585 0.54 +0.4
351,461 + HGI48_RS01585 0.58 +0.6
351,461 + HGI48_RS01585 0.58 -0.1
351,461 + HGI48_RS01585 0.58 -0.4
351,462 - HGI48_RS01585 0.58 -1.4
351,462 - HGI48_RS01585 0.58 -0.4
351,462 - HGI48_RS01585 0.58 -0.4
351,478 - HGI48_RS01585 0.59 -1.4
351,478 - HGI48_RS01585 0.59 -0.0
351,478 - HGI48_RS01585 0.59 -0.4
351,478 - HGI48_RS01585 0.59 -0.6
351,478 - HGI48_RS01585 0.59 -0.1
351,479 + HGI48_RS01585 0.59 -0.6
351,479 + HGI48_RS01585 0.59 -0.1
351,479 + HGI48_RS01585 0.59 -0.0
351,479 + HGI48_RS01585 0.59 -0.5
351,479 + HGI48_RS01585 0.59 -0.2
351,479 + HGI48_RS01585 0.59 +0.4
351,480 - HGI48_RS01585 0.59 +0.3
351,480 - HGI48_RS01585 0.59 -0.4
351,480 - HGI48_RS01585 0.59 -1.7
351,480 - HGI48_RS01585 0.59 +0.7
351,480 - HGI48_RS01585 0.59 -1.4
351,480 - HGI48_RS01585 0.59 +0.3
351,480 - HGI48_RS01585 0.59 -1.6
351,480 - HGI48_RS01585 0.59 +0.0
351,480 - HGI48_RS01585 0.59 +0.1
351,508 - HGI48_RS01585 0.61 +0.3
351,628 - HGI48_RS01585 0.71 +0.8
351,628 - HGI48_RS01585 0.71 +0.1
351,681 + HGI48_RS01585 0.75 -0.7
351,682 - HGI48_RS01585 0.75 -1.7
351,756 + HGI48_RS01585 0.80 +0.3
351,757 - HGI48_RS01585 0.80 +0.0
351,785 + +1.6
351,785 + +1.6
351,786 - HGI48_RS01585 0.83 -0.6
351,786 - HGI48_RS01585 0.83 +0.2
351,791 + HGI48_RS01585 0.83 +0.8
351,792 - HGI48_RS01585 0.83 +0.6
351,792 - HGI48_RS01585 0.83 -1.7
351,792 - HGI48_RS01585 0.83 -1.0
352,045 - -0.4
352,157 + +1.0
352,157 + -0.1
352,167 - +1.2
352,363 - HGI48_RS01590 0.36 -0.4
352,409 + -1.0
352,410 - HGI48_RS01590 0.44 -0.4
352,437 + HGI48_RS01590 0.49 -2.0
352,540 + HGI48_RS01590 0.67 +1.1
352,703 - -1.0
352,722 - +1.3
352,807 + HGI48_RS01595 0.11 +0.9
352,808 - HGI48_RS01595 0.11 -0.4
352,808 - HGI48_RS01595 0.11 +0.4
352,808 - +1.6

Or see this region's nucleotide sequence