Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01570 and HGI48_RS01575 are separated by 235 nucleotides HGI48_RS01575 and HGI48_RS01580 overlap by 4 nucleotides HGI48_RS01580 and HGI48_RS01585 are separated by 93 nucleotides
HGI48_RS01570: HGI48_RS01570 - aerobic respiration two-component sensor histidine kinase ArcB, at 346,641 to 348,980
_RS01570
HGI48_RS01575: HGI48_RS01575 - isoprenoid biosynthesis glyoxalase ElbB, at 349,216 to 349,869
_RS01575
HGI48_RS01580: HGI48_RS01580 - monofunctional biosynthetic peptidoglycan transglycosylase, at 349,866 to 350,615
_RS01580
HGI48_RS01585: HGI48_RS01585 - alginate lyase family protein, at 350,709 to 352,010
_RS01585
Position (kb) 349
350 Strain fitness (log2 ratio) -2
-1
0
1
2 at 348.329 kb on + strand, within HGI48_RS01570 at 348.368 kb on + strand, within HGI48_RS01570 at 348.423 kb on + strand at 348.469 kb on + strand, within HGI48_RS01570 at 348.489 kb on + strand at 348.489 kb on + strand at 348.490 kb on - strand at 348.521 kb on + strand, within HGI48_RS01570 at 348.564 kb on + strand, within HGI48_RS01570 at 348.660 kb on + strand, within HGI48_RS01570 at 348.729 kb on + strand, within HGI48_RS01570 at 348.892 kb on + strand at 348.892 kb on + strand at 348.892 kb on + strand at 348.892 kb on + strand at 348.893 kb on - strand at 349.008 kb on + strand at 349.008 kb on + strand at 349.008 kb on + strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.059 kb on - strand at 349.059 kb on - strand at 349.064 kb on + strand at 349.078 kb on + strand at 349.079 kb on - strand at 349.107 kb on + strand at 349.108 kb on - strand at 349.108 kb on - strand at 349.114 kb on + strand at 349.114 kb on + strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.129 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.156 kb on - strand at 349.156 kb on - strand at 349.156 kb on - strand at 349.161 kb on - strand at 349.195 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.211 kb on - strand at 349.211 kb on - strand at 349.255 kb on + strand at 349.256 kb on - strand at 349.256 kb on - strand at 349.362 kb on + strand, within HGI48_RS01575 at 349.576 kb on - strand, within HGI48_RS01575 at 349.576 kb on - strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.653 kb on + strand, within HGI48_RS01575 at 349.661 kb on + strand, within HGI48_RS01575 at 349.661 kb on + strand, within HGI48_RS01575 at 349.668 kb on + strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.678 kb on - strand, within HGI48_RS01575 at 349.721 kb on + strand at 349.721 kb on + strand, within HGI48_RS01575 at 349.721 kb on + strand, within HGI48_RS01575 at 349.722 kb on - strand, within HGI48_RS01575 at 349.739 kb on + strand at 349.740 kb on - strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.790 kb on - strand, within HGI48_RS01575 at 350.047 kb on + strand, within HGI48_RS01580 at 350.047 kb on + strand, within HGI48_RS01580 at 350.048 kb on - strand, within HGI48_RS01580 at 350.048 kb on - strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.064 kb on + strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.065 kb on - strand, within HGI48_RS01580 at 350.195 kb on + strand, within HGI48_RS01580 at 350.195 kb on + strand, within HGI48_RS01580 at 350.196 kb on - strand, within HGI48_RS01580 at 350.196 kb on - strand at 350.201 kb on + strand, within HGI48_RS01580 at 350.201 kb on + strand, within HGI48_RS01580 at 350.202 kb on - strand, within HGI48_RS01580 at 350.202 kb on - strand, within HGI48_RS01580 at 350.355 kb on - strand, within HGI48_RS01580 at 350.375 kb on + strand at 350.376 kb on - strand, within HGI48_RS01580 at 350.407 kb on + strand, within HGI48_RS01580 at 350.407 kb on + strand, within HGI48_RS01580 at 350.407 kb on + strand, within HGI48_RS01580 at 350.408 kb on - strand, within HGI48_RS01580 at 350.408 kb on - strand, within HGI48_RS01580 at 350.408 kb on - strand, within HGI48_RS01580 at 350.435 kb on + strand at 350.436 kb on - strand, within HGI48_RS01580 at 350.436 kb on - strand, within HGI48_RS01580 at 350.499 kb on - strand, within HGI48_RS01580 at 350.529 kb on + strand, within HGI48_RS01580 at 350.530 kb on - strand at 350.610 kb on + strand at 350.633 kb on + strand at 350.634 kb on - strand at 350.634 kb on - strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.707 kb on + strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.708 kb on - strand at 350.802 kb on + strand at 350.802 kb on + strand at 350.802 kb on + strand at 350.802 kb on + strand at 350.803 kb on - strand at 350.803 kb on - strand at 350.806 kb on + strand at 350.806 kb on + strand at 350.806 kb on + strand at 350.806 kb on + strand at 350.806 kb on + strand at 350.812 kb on + strand at 350.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 348,329 + HGI48_RS01570 0.72 +0.3 348,368 + HGI48_RS01570 0.74 +0.9 348,423 + -1.0 348,469 + HGI48_RS01570 0.78 +0.0 348,489 + -0.4 348,489 + +0.6 348,490 - +1.4 348,521 + HGI48_RS01570 0.80 -0.7 348,564 + HGI48_RS01570 0.82 +0.9 348,660 + HGI48_RS01570 0.86 -0.4 348,729 + HGI48_RS01570 0.89 -1.7 348,892 + -0.6 348,892 + +0.9 348,892 + +0.5 348,892 + -0.3 348,893 - -1.4 349,008 + +0.6 349,008 + +1.3 349,008 + +1.4 349,009 - +1.3 349,009 - +0.0 349,009 - +1.2 349,009 - +0.4 349,009 - +1.0 349,033 + +1.2 349,033 + +0.8 349,033 + +1.8 349,033 + +0.9 349,033 + +0.7 349,033 + +0.3 349,033 + +0.7 349,033 + +1.3 349,033 + -0.6 349,034 - +1.7 349,034 - +1.5 349,034 - +0.2 349,034 - -0.4 349,034 - +1.2 349,034 - +0.6 349,034 - +1.4 349,034 - +0.5 349,034 - -0.7 349,034 - +1.3 349,034 - +0.2 349,058 + +0.9 349,058 + +1.0 349,058 + +0.4 349,058 + +0.9 349,059 - +0.7 349,059 - -1.1 349,064 + +0.7 349,078 + +0.3 349,079 - +1.1 349,107 + +1.5 349,108 - +0.8 349,108 - +0.5 349,114 + +0.4 349,114 + -0.1 349,115 - -2.2 349,115 - -0.3 349,115 - -0.1 349,115 - -0.7 349,115 - -0.7 349,115 - -0.0 349,115 - +0.6 349,115 - +0.7 349,129 + +0.0 349,155 + +0.0 349,155 + -0.5 349,155 + -1.5 349,155 + +0.2 349,155 + -2.0 349,155 + +0.5 349,155 + +0.6 349,155 + -0.2 349,156 - -1.4 349,156 - -0.1 349,156 - +0.8 349,161 - +0.3 349,195 + -0.3 349,210 + +0.1 349,210 + -0.2 349,210 + +0.2 349,210 + -0.5 349,210 + +0.3 349,211 - -1.7 349,211 - +0.0 349,255 + -1.5 349,256 - +0.6 349,256 - -0.4 349,362 + HGI48_RS01575 0.22 -1.7 349,576 - HGI48_RS01575 0.55 -1.4 349,576 - HGI48_RS01575 0.55 -0.9 349,632 + HGI48_RS01575 0.64 +0.6 349,632 + HGI48_RS01575 0.64 +0.2 349,632 + HGI48_RS01575 0.64 -1.7 349,632 + HGI48_RS01575 0.64 -1.0 349,632 + HGI48_RS01575 0.64 -1.0 349,633 - HGI48_RS01575 0.64 +0.2 349,633 - HGI48_RS01575 0.64 +0.8 349,633 - HGI48_RS01575 0.64 +1.6 349,653 + HGI48_RS01575 0.67 -0.0 349,661 + HGI48_RS01575 0.68 -0.7 349,661 + HGI48_RS01575 0.68 +0.4 349,668 + HGI48_RS01575 0.69 +0.5 349,669 - HGI48_RS01575 0.69 +0.0 349,669 - HGI48_RS01575 0.69 -1.3 349,669 - HGI48_RS01575 0.69 -0.1 349,669 - HGI48_RS01575 0.69 -0.0 349,669 - HGI48_RS01575 0.69 +0.2 349,669 - HGI48_RS01575 0.69 -0.2 349,678 - HGI48_RS01575 0.71 -1.7 349,721 + +1.8 349,721 + HGI48_RS01575 0.77 +0.2 349,721 + HGI48_RS01575 0.77 -0.0 349,722 - HGI48_RS01575 0.77 -0.7 349,739 + +0.6 349,740 - HGI48_RS01575 0.80 -0.0 349,789 + HGI48_RS01575 0.88 -1.6 349,789 + HGI48_RS01575 0.88 +0.0 349,789 + HGI48_RS01575 0.88 -1.4 349,789 + HGI48_RS01575 0.88 -1.7 349,789 + HGI48_RS01575 0.88 +0.4 349,789 + HGI48_RS01575 0.88 +0.1 349,790 - HGI48_RS01575 0.88 -0.3 350,047 + HGI48_RS01580 0.24 -1.7 350,047 + HGI48_RS01580 0.24 -1.3 350,048 - HGI48_RS01580 0.24 +1.0 350,048 - HGI48_RS01580 0.24 -0.3 350,064 + HGI48_RS01580 0.26 +1.3 350,064 + HGI48_RS01580 0.26 -0.4 350,064 + HGI48_RS01580 0.26 +0.3 350,064 + HGI48_RS01580 0.26 -0.1 350,064 + HGI48_RS01580 0.26 -2.4 350,064 + HGI48_RS01580 0.26 -0.7 350,065 - HGI48_RS01580 0.27 -0.7 350,065 - HGI48_RS01580 0.27 +0.9 350,065 - HGI48_RS01580 0.27 -1.6 350,065 - HGI48_RS01580 0.27 -1.5 350,065 - HGI48_RS01580 0.27 -0.4 350,065 - HGI48_RS01580 0.27 +0.2 350,195 + HGI48_RS01580 0.44 -1.4 350,195 + HGI48_RS01580 0.44 +0.0 350,196 - HGI48_RS01580 0.44 -0.7 350,196 - +1.3 350,201 + HGI48_RS01580 0.45 -0.1 350,201 + HGI48_RS01580 0.45 -0.7 350,202 - HGI48_RS01580 0.45 +0.1 350,202 - HGI48_RS01580 0.45 +0.1 350,355 - HGI48_RS01580 0.65 +0.6 350,375 + +1.2 350,376 - HGI48_RS01580 0.68 -0.4 350,407 + HGI48_RS01580 0.72 -0.4 350,407 + HGI48_RS01580 0.72 +0.6 350,407 + HGI48_RS01580 0.72 -1.0 350,408 - HGI48_RS01580 0.72 +0.3 350,408 - HGI48_RS01580 0.72 -0.1 350,408 - HGI48_RS01580 0.72 -1.4 350,435 + +2.0 350,436 - HGI48_RS01580 0.76 +0.3 350,436 - HGI48_RS01580 0.76 -1.6 350,499 - HGI48_RS01580 0.84 -0.6 350,529 + HGI48_RS01580 0.88 -1.2 350,530 - +1.3 350,610 + -1.4 350,633 + -1.7 350,634 - +0.2 350,634 - +0.2 350,707 + -2.7 350,707 + -1.0 350,707 + -1.1 350,707 + +0.8 350,707 + -0.4 350,707 + -0.7 350,707 + -1.1 350,707 + -1.4 350,707 + -0.1 350,708 - +0.6 350,708 - +0.1 350,708 - -0.1 350,708 - -1.0 350,708 - -0.1 350,708 - +0.3 350,708 - +0.6 350,708 - -0.7 350,802 + +0.2 350,802 + -0.1 350,802 + -1.7 350,802 + +0.4 350,803 - -0.7 350,803 - -1.1 350,806 + +0.0 350,806 + +0.3 350,806 + +0.1 350,806 + +1.7 350,806 + +0.2 350,812 + -1.6 350,837 - +0.1
Or see this region's nucleotide sequence