Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01565 and HGI48_RS01570 are separated by 93 nucleotides HGI48_RS01570 and HGI48_RS01575 are separated by 235 nucleotides HGI48_RS01575 and HGI48_RS01580 overlap by 4 nucleotides
HGI48_RS01565: HGI48_RS01565 - TIGR01212 family radical SAM protein, at 345,618 to 346,547
_RS01565
HGI48_RS01570: HGI48_RS01570 - aerobic respiration two-component sensor histidine kinase ArcB, at 346,641 to 348,980
_RS01570
HGI48_RS01575: HGI48_RS01575 - isoprenoid biosynthesis glyoxalase ElbB, at 349,216 to 349,869
_RS01575
HGI48_RS01580: HGI48_RS01580 - monofunctional biosynthetic peptidoglycan transglycosylase, at 349,866 to 350,615
_RS01580
Position (kb) 346
347
348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 345.642 kb on - strand at 345.642 kb on - strand at 345.697 kb on + strand at 345.698 kb on - strand at 345.710 kb on + strand at 345.711 kb on - strand, within HGI48_RS01565 at 345.711 kb on - strand, within HGI48_RS01565 at 345.711 kb on - strand, within HGI48_RS01565 at 345.752 kb on + strand, within HGI48_RS01565 at 345.752 kb on + strand, within HGI48_RS01565 at 345.753 kb on - strand at 345.753 kb on - strand at 345.753 kb on - strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.877 kb on - strand, within HGI48_RS01565 at 345.878 kb on + strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.889 kb on - strand, within HGI48_RS01565 at 345.889 kb on - strand, within HGI48_RS01565 at 345.918 kb on + strand, within HGI48_RS01565 at 346.014 kb on + strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.114 kb on - strand, within HGI48_RS01565 at 346.156 kb on + strand, within HGI48_RS01565 at 346.156 kb on + strand at 346.156 kb on + strand, within HGI48_RS01565 at 346.156 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.338 kb on + strand, within HGI48_RS01565 at 346.338 kb on + strand, within HGI48_RS01565 at 346.339 kb on - strand, within HGI48_RS01565 at 346.389 kb on + strand, within HGI48_RS01565 at 346.389 kb on + strand, within HGI48_RS01565 at 346.390 kb on - strand, within HGI48_RS01565 at 346.397 kb on + strand, within HGI48_RS01565 at 346.397 kb on + strand, within HGI48_RS01565 at 346.398 kb on - strand at 346.482 kb on + strand at 346.482 kb on + strand at 346.483 kb on - strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.546 kb on - strand at 346.582 kb on - strand at 346.602 kb on - strand at 346.621 kb on + strand at 346.622 kb on - strand at 346.622 kb on - strand at 346.627 kb on + strand at 346.671 kb on + strand at 346.671 kb on + strand at 346.681 kb on + strand at 346.681 kb on + strand at 346.681 kb on + strand at 346.851 kb on + strand at 346.851 kb on + strand at 346.851 kb on + strand at 347.197 kb on + strand, within HGI48_RS01570 at 347.322 kb on + strand, within HGI48_RS01570 at 347.322 kb on + strand, within HGI48_RS01570 at 347.323 kb on - strand, within HGI48_RS01570 at 347.397 kb on - strand, within HGI48_RS01570 at 347.439 kb on - strand, within HGI48_RS01570 at 347.447 kb on + strand, within HGI48_RS01570 at 347.447 kb on + strand, within HGI48_RS01570 at 347.534 kb on + strand, within HGI48_RS01570 at 347.535 kb on - strand, within HGI48_RS01570 at 348.000 kb on + strand at 348.000 kb on + strand, within HGI48_RS01570 at 348.000 kb on + strand, within HGI48_RS01570 at 348.000 kb on + strand at 348.000 kb on + strand at 348.000 kb on + strand, within HGI48_RS01570 at 348.001 kb on - strand, within HGI48_RS01570 at 348.329 kb on + strand, within HGI48_RS01570 at 348.368 kb on + strand, within HGI48_RS01570 at 348.423 kb on + strand at 348.469 kb on + strand, within HGI48_RS01570 at 348.489 kb on + strand at 348.489 kb on + strand at 348.490 kb on - strand at 348.521 kb on + strand, within HGI48_RS01570 at 348.564 kb on + strand, within HGI48_RS01570 at 348.660 kb on + strand, within HGI48_RS01570 at 348.729 kb on + strand, within HGI48_RS01570 at 348.892 kb on + strand at 348.892 kb on + strand at 348.892 kb on + strand at 348.892 kb on + strand at 348.893 kb on - strand at 349.008 kb on + strand at 349.008 kb on + strand at 349.008 kb on + strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.009 kb on - strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.033 kb on + strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.034 kb on - strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.058 kb on + strand at 349.059 kb on - strand at 349.059 kb on - strand at 349.064 kb on + strand at 349.078 kb on + strand at 349.079 kb on - strand at 349.107 kb on + strand at 349.108 kb on - strand at 349.108 kb on - strand at 349.114 kb on + strand at 349.114 kb on + strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.129 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.155 kb on + strand at 349.156 kb on - strand at 349.156 kb on - strand at 349.156 kb on - strand at 349.161 kb on - strand at 349.195 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.210 kb on + strand at 349.211 kb on - strand at 349.211 kb on - strand at 349.255 kb on + strand at 349.256 kb on - strand at 349.256 kb on - strand at 349.362 kb on + strand, within HGI48_RS01575 at 349.576 kb on - strand, within HGI48_RS01575 at 349.576 kb on - strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.632 kb on + strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.633 kb on - strand, within HGI48_RS01575 at 349.653 kb on + strand, within HGI48_RS01575 at 349.661 kb on + strand, within HGI48_RS01575 at 349.661 kb on + strand, within HGI48_RS01575 at 349.668 kb on + strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.669 kb on - strand, within HGI48_RS01575 at 349.678 kb on - strand, within HGI48_RS01575 at 349.721 kb on + strand at 349.721 kb on + strand, within HGI48_RS01575 at 349.721 kb on + strand, within HGI48_RS01575 at 349.722 kb on - strand, within HGI48_RS01575 at 349.739 kb on + strand at 349.740 kb on - strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.789 kb on + strand, within HGI48_RS01575 at 349.790 kb on - strand, within HGI48_RS01575
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 345,642 - -0.1 345,642 - +0.5 345,697 + -0.5 345,698 - +1.2 345,710 + +0.4 345,711 - HGI48_RS01565 0.10 +0.8 345,711 - HGI48_RS01565 0.10 -1.2 345,711 - HGI48_RS01565 0.10 -0.2 345,752 + HGI48_RS01565 0.14 -0.6 345,752 + HGI48_RS01565 0.14 -0.7 345,753 - +0.6 345,753 - +1.2 345,753 - HGI48_RS01565 0.15 +0.6 345,876 + HGI48_RS01565 0.28 +0.3 345,876 + HGI48_RS01565 0.28 -0.6 345,876 + HGI48_RS01565 0.28 -0.4 345,876 + HGI48_RS01565 0.28 -0.1 345,877 - HGI48_RS01565 0.28 -0.8 345,878 + HGI48_RS01565 0.28 -1.7 345,879 - HGI48_RS01565 0.28 +0.8 345,879 - HGI48_RS01565 0.28 +0.3 345,879 - HGI48_RS01565 0.28 +0.4 345,888 + HGI48_RS01565 0.29 -0.4 345,888 + HGI48_RS01565 0.29 -0.0 345,888 + +1.0 345,888 + HGI48_RS01565 0.29 -0.1 345,888 + HGI48_RS01565 0.29 -1.7 345,889 - HGI48_RS01565 0.29 -0.6 345,889 - HGI48_RS01565 0.29 -0.1 345,918 + HGI48_RS01565 0.32 +0.2 346,014 + HGI48_RS01565 0.43 -0.4 346,030 - HGI48_RS01565 0.44 +0.2 346,030 - HGI48_RS01565 0.44 -1.7 346,030 - HGI48_RS01565 0.44 -0.4 346,114 - HGI48_RS01565 0.53 -1.2 346,156 + HGI48_RS01565 0.58 -0.2 346,156 + +1.6 346,156 + HGI48_RS01565 0.58 +0.3 346,156 + HGI48_RS01565 0.58 +0.3 346,285 + HGI48_RS01565 0.72 +0.2 346,285 + HGI48_RS01565 0.72 -0.7 346,285 + HGI48_RS01565 0.72 +0.1 346,285 + HGI48_RS01565 0.72 +0.6 346,285 + HGI48_RS01565 0.72 +0.3 346,338 + HGI48_RS01565 0.77 +0.9 346,338 + HGI48_RS01565 0.77 -0.8 346,339 - HGI48_RS01565 0.78 -1.1 346,389 + HGI48_RS01565 0.83 -0.5 346,389 + HGI48_RS01565 0.83 +1.4 346,390 - HGI48_RS01565 0.83 -2.1 346,397 + HGI48_RS01565 0.84 -1.0 346,397 + HGI48_RS01565 0.84 -0.7 346,398 - +0.0 346,482 + -1.0 346,482 + -0.9 346,483 - -0.6 346,545 + +1.6 346,545 + +0.0 346,545 + +0.6 346,545 + -0.7 346,545 + -0.4 346,546 - +0.2 346,582 - +0.8 346,602 - -0.6 346,621 + +0.1 346,622 - +0.1 346,622 - -0.5 346,627 + -1.8 346,671 + +0.5 346,671 + +0.0 346,681 + +0.0 346,681 + -0.2 346,681 + -1.7 346,851 + -0.4 346,851 + -1.0 346,851 + -0.4 347,197 + HGI48_RS01570 0.24 -1.3 347,322 + HGI48_RS01570 0.29 -2.0 347,322 + HGI48_RS01570 0.29 -1.7 347,323 - HGI48_RS01570 0.29 -0.3 347,397 - HGI48_RS01570 0.32 -3.5 347,439 - HGI48_RS01570 0.34 -1.7 347,447 + HGI48_RS01570 0.34 -2.2 347,447 + HGI48_RS01570 0.34 -0.9 347,534 + HGI48_RS01570 0.38 -0.1 347,535 - HGI48_RS01570 0.38 -1.8 348,000 + +1.6 348,000 + HGI48_RS01570 0.58 -1.0 348,000 + HGI48_RS01570 0.58 +1.1 348,000 + -1.0 348,000 + +0.6 348,000 + HGI48_RS01570 0.58 +0.0 348,001 - HGI48_RS01570 0.58 -1.0 348,329 + HGI48_RS01570 0.72 +0.3 348,368 + HGI48_RS01570 0.74 +0.9 348,423 + -1.0 348,469 + HGI48_RS01570 0.78 +0.0 348,489 + -0.4 348,489 + +0.6 348,490 - +1.4 348,521 + HGI48_RS01570 0.80 -0.7 348,564 + HGI48_RS01570 0.82 +0.9 348,660 + HGI48_RS01570 0.86 -0.4 348,729 + HGI48_RS01570 0.89 -1.7 348,892 + -0.6 348,892 + +0.9 348,892 + +0.5 348,892 + -0.3 348,893 - -1.4 349,008 + +0.6 349,008 + +1.3 349,008 + +1.4 349,009 - +1.3 349,009 - +0.0 349,009 - +1.2 349,009 - +0.4 349,009 - +1.0 349,033 + +1.2 349,033 + +0.8 349,033 + +1.8 349,033 + +0.9 349,033 + +0.7 349,033 + +0.3 349,033 + +0.7 349,033 + +1.3 349,033 + -0.6 349,034 - +1.7 349,034 - +1.5 349,034 - +0.2 349,034 - -0.4 349,034 - +1.2 349,034 - +0.6 349,034 - +1.4 349,034 - +0.5 349,034 - -0.7 349,034 - +1.3 349,034 - +0.2 349,058 + +0.9 349,058 + +1.0 349,058 + +0.4 349,058 + +0.9 349,059 - +0.7 349,059 - -1.1 349,064 + +0.7 349,078 + +0.3 349,079 - +1.1 349,107 + +1.5 349,108 - +0.8 349,108 - +0.5 349,114 + +0.4 349,114 + -0.1 349,115 - -2.2 349,115 - -0.3 349,115 - -0.1 349,115 - -0.7 349,115 - -0.7 349,115 - -0.0 349,115 - +0.6 349,115 - +0.7 349,129 + +0.0 349,155 + +0.0 349,155 + -0.5 349,155 + -1.5 349,155 + +0.2 349,155 + -2.0 349,155 + +0.5 349,155 + +0.6 349,155 + -0.2 349,156 - -1.4 349,156 - -0.1 349,156 - +0.8 349,161 - +0.3 349,195 + -0.3 349,210 + +0.1 349,210 + -0.2 349,210 + +0.2 349,210 + -0.5 349,210 + +0.3 349,211 - -1.7 349,211 - +0.0 349,255 + -1.5 349,256 - +0.6 349,256 - -0.4 349,362 + HGI48_RS01575 0.22 -1.7 349,576 - HGI48_RS01575 0.55 -1.4 349,576 - HGI48_RS01575 0.55 -0.9 349,632 + HGI48_RS01575 0.64 +0.6 349,632 + HGI48_RS01575 0.64 +0.2 349,632 + HGI48_RS01575 0.64 -1.7 349,632 + HGI48_RS01575 0.64 -1.0 349,632 + HGI48_RS01575 0.64 -1.0 349,633 - HGI48_RS01575 0.64 +0.2 349,633 - HGI48_RS01575 0.64 +0.8 349,633 - HGI48_RS01575 0.64 +1.6 349,653 + HGI48_RS01575 0.67 -0.0 349,661 + HGI48_RS01575 0.68 -0.7 349,661 + HGI48_RS01575 0.68 +0.4 349,668 + HGI48_RS01575 0.69 +0.5 349,669 - HGI48_RS01575 0.69 +0.0 349,669 - HGI48_RS01575 0.69 -1.3 349,669 - HGI48_RS01575 0.69 -0.1 349,669 - HGI48_RS01575 0.69 -0.0 349,669 - HGI48_RS01575 0.69 +0.2 349,669 - HGI48_RS01575 0.69 -0.2 349,678 - HGI48_RS01575 0.71 -1.7 349,721 + +1.8 349,721 + HGI48_RS01575 0.77 +0.2 349,721 + HGI48_RS01575 0.77 -0.0 349,722 - HGI48_RS01575 0.77 -0.7 349,739 + +0.6 349,740 - HGI48_RS01575 0.80 -0.0 349,789 + HGI48_RS01575 0.88 -1.6 349,789 + HGI48_RS01575 0.88 +0.0 349,789 + HGI48_RS01575 0.88 -1.4 349,789 + HGI48_RS01575 0.88 -1.7 349,789 + HGI48_RS01575 0.88 +0.4 349,789 + HGI48_RS01575 0.88 +0.1 349,790 - HGI48_RS01575 0.88 -0.3
Or see this region's nucleotide sequence