Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01560 and HGI48_RS01565 are separated by 717 nucleotides HGI48_RS01565 and HGI48_RS01570 are separated by 93 nucleotides
HGI48_RS01560: HGI48_RS01560 - glutamate synthase large subunit, at 340,440 to 344,900
_RS01560
HGI48_RS01565: HGI48_RS01565 - TIGR01212 family radical SAM protein, at 345,618 to 346,547
_RS01565
HGI48_RS01570: HGI48_RS01570 - aerobic respiration two-component sensor histidine kinase ArcB, at 346,641 to 348,980
_RS01570
Position (kb) 345
346
347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 344.659 kb on + strand at 344.730 kb on + strand at 344.730 kb on + strand at 344.730 kb on + strand at 344.731 kb on - strand at 344.731 kb on - strand at 344.731 kb on - strand at 344.822 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.893 kb on + strand at 344.893 kb on + strand at 344.893 kb on + strand at 344.894 kb on - strand at 344.894 kb on - strand at 344.894 kb on - strand at 344.900 kb on + strand at 344.900 kb on + strand at 344.900 kb on + strand at 344.900 kb on + strand at 344.900 kb on + strand at 344.900 kb on + strand at 344.901 kb on - strand at 344.901 kb on - strand at 344.901 kb on - strand at 344.901 kb on - strand at 344.901 kb on - strand at 344.901 kb on - strand at 344.927 kb on + strand at 344.927 kb on + strand at 344.928 kb on - strand at 344.928 kb on - strand at 344.928 kb on - strand at 344.971 kb on + strand at 344.974 kb on + strand at 344.974 kb on + strand at 344.974 kb on + strand at 344.974 kb on + strand at 345.057 kb on + strand at 345.071 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.127 kb on - strand at 345.127 kb on - strand at 345.130 kb on + strand at 345.130 kb on + strand at 345.131 kb on - strand at 345.131 kb on - strand at 345.227 kb on + strand at 345.236 kb on + strand at 345.323 kb on + strand at 345.323 kb on + strand at 345.335 kb on - strand at 345.335 kb on - strand at 345.335 kb on - strand at 345.387 kb on + strand at 345.387 kb on + strand at 345.387 kb on + strand at 345.388 kb on - strand at 345.415 kb on + strand at 345.468 kb on + strand at 345.478 kb on + strand at 345.530 kb on + strand at 345.530 kb on + strand at 345.531 kb on - strand at 345.532 kb on + strand at 345.584 kb on + strand at 345.597 kb on + strand at 345.634 kb on + strand at 345.634 kb on + strand at 345.635 kb on - strand at 345.642 kb on - strand at 345.642 kb on - strand at 345.697 kb on + strand at 345.698 kb on - strand at 345.710 kb on + strand at 345.711 kb on - strand, within HGI48_RS01565 at 345.711 kb on - strand, within HGI48_RS01565 at 345.711 kb on - strand, within HGI48_RS01565 at 345.752 kb on + strand, within HGI48_RS01565 at 345.752 kb on + strand, within HGI48_RS01565 at 345.753 kb on - strand at 345.753 kb on - strand at 345.753 kb on - strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.877 kb on - strand, within HGI48_RS01565 at 345.878 kb on + strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.889 kb on - strand, within HGI48_RS01565 at 345.889 kb on - strand, within HGI48_RS01565 at 345.918 kb on + strand, within HGI48_RS01565 at 346.014 kb on + strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.114 kb on - strand, within HGI48_RS01565 at 346.156 kb on + strand, within HGI48_RS01565 at 346.156 kb on + strand at 346.156 kb on + strand, within HGI48_RS01565 at 346.156 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.338 kb on + strand, within HGI48_RS01565 at 346.338 kb on + strand, within HGI48_RS01565 at 346.339 kb on - strand, within HGI48_RS01565 at 346.389 kb on + strand, within HGI48_RS01565 at 346.389 kb on + strand, within HGI48_RS01565 at 346.390 kb on - strand, within HGI48_RS01565 at 346.397 kb on + strand, within HGI48_RS01565 at 346.397 kb on + strand, within HGI48_RS01565 at 346.398 kb on - strand at 346.482 kb on + strand at 346.482 kb on + strand at 346.483 kb on - strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.546 kb on - strand at 346.582 kb on - strand at 346.602 kb on - strand at 346.621 kb on + strand at 346.622 kb on - strand at 346.622 kb on - strand at 346.627 kb on + strand at 346.671 kb on + strand at 346.671 kb on + strand at 346.681 kb on + strand at 346.681 kb on + strand at 346.681 kb on + strand at 346.851 kb on + strand at 346.851 kb on + strand at 346.851 kb on + strand at 347.197 kb on + strand, within HGI48_RS01570 at 347.322 kb on + strand, within HGI48_RS01570 at 347.322 kb on + strand, within HGI48_RS01570 at 347.323 kb on - strand, within HGI48_RS01570 at 347.397 kb on - strand, within HGI48_RS01570 at 347.439 kb on - strand, within HGI48_RS01570 at 347.447 kb on + strand, within HGI48_RS01570 at 347.447 kb on + strand, within HGI48_RS01570 at 347.534 kb on + strand, within HGI48_RS01570 at 347.535 kb on - strand, within HGI48_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 344,659 + +0.0 344,730 + -0.3 344,730 + +1.6 344,730 + +0.2 344,731 - -0.4 344,731 - +1.2 344,731 - -0.1 344,822 + -0.2 344,841 + +0.6 344,841 + -2.4 344,841 + +0.6 344,841 + +1.6 344,841 + -2.8 344,841 + +0.1 344,841 + -1.0 344,841 + -0.7 344,841 + +0.6 344,841 + +0.2 344,841 + +0.6 344,841 + +2.4 344,841 + +0.6 344,841 + +1.1 344,842 - -0.6 344,842 - -0.4 344,842 - +0.0 344,842 - +2.7 344,842 - -0.2 344,842 - -0.4 344,842 - +1.8 344,842 - +0.6 344,842 - +0.6 344,842 - -0.1 344,842 - +0.3 344,842 - -0.4 344,842 - -0.2 344,893 + +1.0 344,893 + +0.0 344,893 + -0.4 344,894 - +0.6 344,894 - -0.1 344,894 - +1.5 344,900 + +0.4 344,900 + +0.3 344,900 + -1.7 344,900 + -1.5 344,900 + +0.3 344,900 + +0.0 344,901 - -0.2 344,901 - -0.2 344,901 - +2.2 344,901 - +0.2 344,901 - +0.3 344,901 - +2.1 344,927 + +0.3 344,927 + +0.4 344,928 - +0.6 344,928 - -1.4 344,928 - +0.0 344,971 + +1.6 344,974 + +0.8 344,974 + -0.2 344,974 + -1.1 344,974 + +0.9 345,057 + +0.2 345,071 + -0.0 345,126 + -1.4 345,126 + +0.0 345,126 + +0.0 345,126 + -0.8 345,126 + -0.8 345,126 + -0.5 345,126 + +0.4 345,126 + +0.1 345,126 + -0.1 345,127 - +0.9 345,127 - +0.2 345,130 + -0.1 345,130 + -1.0 345,131 - +0.9 345,131 - -0.5 345,227 + +0.1 345,236 + +0.8 345,323 + -1.0 345,323 + +0.6 345,335 - +0.2 345,335 - -2.6 345,335 - +0.5 345,387 + -0.4 345,387 + +2.0 345,387 + +1.2 345,388 - -0.1 345,415 + -0.4 345,468 + +0.9 345,478 + +0.6 345,530 + -0.4 345,530 + -0.1 345,531 - -0.2 345,532 + +0.6 345,584 + -1.7 345,597 + +0.4 345,634 + -2.0 345,634 + +0.5 345,635 - -1.1 345,642 - -0.1 345,642 - +0.5 345,697 + -0.5 345,698 - +1.2 345,710 + +0.4 345,711 - HGI48_RS01565 0.10 +0.8 345,711 - HGI48_RS01565 0.10 -1.2 345,711 - HGI48_RS01565 0.10 -0.2 345,752 + HGI48_RS01565 0.14 -0.6 345,752 + HGI48_RS01565 0.14 -0.7 345,753 - +0.6 345,753 - +1.2 345,753 - HGI48_RS01565 0.15 +0.6 345,876 + HGI48_RS01565 0.28 +0.3 345,876 + HGI48_RS01565 0.28 -0.6 345,876 + HGI48_RS01565 0.28 -0.4 345,876 + HGI48_RS01565 0.28 -0.1 345,877 - HGI48_RS01565 0.28 -0.8 345,878 + HGI48_RS01565 0.28 -1.7 345,879 - HGI48_RS01565 0.28 +0.8 345,879 - HGI48_RS01565 0.28 +0.3 345,879 - HGI48_RS01565 0.28 +0.4 345,888 + HGI48_RS01565 0.29 -0.4 345,888 + HGI48_RS01565 0.29 -0.0 345,888 + +1.0 345,888 + HGI48_RS01565 0.29 -0.1 345,888 + HGI48_RS01565 0.29 -1.7 345,889 - HGI48_RS01565 0.29 -0.6 345,889 - HGI48_RS01565 0.29 -0.1 345,918 + HGI48_RS01565 0.32 +0.2 346,014 + HGI48_RS01565 0.43 -0.4 346,030 - HGI48_RS01565 0.44 +0.2 346,030 - HGI48_RS01565 0.44 -1.7 346,030 - HGI48_RS01565 0.44 -0.4 346,114 - HGI48_RS01565 0.53 -1.2 346,156 + HGI48_RS01565 0.58 -0.2 346,156 + +1.6 346,156 + HGI48_RS01565 0.58 +0.3 346,156 + HGI48_RS01565 0.58 +0.3 346,285 + HGI48_RS01565 0.72 +0.2 346,285 + HGI48_RS01565 0.72 -0.7 346,285 + HGI48_RS01565 0.72 +0.1 346,285 + HGI48_RS01565 0.72 +0.6 346,285 + HGI48_RS01565 0.72 +0.3 346,338 + HGI48_RS01565 0.77 +0.9 346,338 + HGI48_RS01565 0.77 -0.8 346,339 - HGI48_RS01565 0.78 -1.1 346,389 + HGI48_RS01565 0.83 -0.5 346,389 + HGI48_RS01565 0.83 +1.4 346,390 - HGI48_RS01565 0.83 -2.1 346,397 + HGI48_RS01565 0.84 -1.0 346,397 + HGI48_RS01565 0.84 -0.7 346,398 - +0.0 346,482 + -1.0 346,482 + -0.9 346,483 - -0.6 346,545 + +1.6 346,545 + +0.0 346,545 + +0.6 346,545 + -0.7 346,545 + -0.4 346,546 - +0.2 346,582 - +0.8 346,602 - -0.6 346,621 + +0.1 346,622 - +0.1 346,622 - -0.5 346,627 + -1.8 346,671 + +0.5 346,671 + +0.0 346,681 + +0.0 346,681 + -0.2 346,681 + -1.7 346,851 + -0.4 346,851 + -1.0 346,851 + -0.4 347,197 + HGI48_RS01570 0.24 -1.3 347,322 + HGI48_RS01570 0.29 -2.0 347,322 + HGI48_RS01570 0.29 -1.7 347,323 - HGI48_RS01570 0.29 -0.3 347,397 - HGI48_RS01570 0.32 -3.5 347,439 - HGI48_RS01570 0.34 -1.7 347,447 + HGI48_RS01570 0.34 -2.2 347,447 + HGI48_RS01570 0.34 -0.9 347,534 + HGI48_RS01570 0.38 -0.1 347,535 - HGI48_RS01570 0.38 -1.8
Or see this region's nucleotide sequence