Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01400 and HGI48_RS01405 are separated by 6 nucleotides HGI48_RS01405 and HGI48_RS01410 are separated by 293 nucleotides
HGI48_RS01400: HGI48_RS01400 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 313,028 to 314,977
_RS01400
HGI48_RS01405: HGI48_RS01405 - DUF1543 domain-containing protein, at 314,984 to 315,484
_RS01405
HGI48_RS01410: HGI48_RS01410 - ribosome-associated protein, at 315,778 to 316,326
_RS01410
Position (kb) 314
315
316 Strain fitness (log2 ratio) -2
-1
0
1
2 at 314.043 kb on + strand, within HGI48_RS01400 at 314.172 kb on + strand, within HGI48_RS01400 at 314.172 kb on + strand, within HGI48_RS01400 at 314.173 kb on - strand at 314.173 kb on - strand, within HGI48_RS01400 at 314.173 kb on - strand at 314.173 kb on - strand, within HGI48_RS01400 at 314.284 kb on + strand, within HGI48_RS01400 at 314.284 kb on + strand, within HGI48_RS01400 at 314.284 kb on + strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.322 kb on + strand, within HGI48_RS01400 at 314.323 kb on - strand at 314.419 kb on + strand, within HGI48_RS01400 at 314.419 kb on + strand at 314.420 kb on - strand, within HGI48_RS01400 at 314.420 kb on - strand, within HGI48_RS01400 at 314.420 kb on - strand, within HGI48_RS01400 at 314.488 kb on + strand, within HGI48_RS01400 at 314.562 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.646 kb on - strand, within HGI48_RS01400 at 314.646 kb on - strand, within HGI48_RS01400 at 314.646 kb on - strand, within HGI48_RS01400 at 314.696 kb on + strand, within HGI48_RS01400 at 314.696 kb on + strand, within HGI48_RS01400 at 314.873 kb on + strand at 314.873 kb on + strand at 314.873 kb on + strand at 314.873 kb on + strand at 314.874 kb on - strand at 314.874 kb on - strand at 314.956 kb on + strand at 314.957 kb on - strand at 314.986 kb on - strand at 314.997 kb on + strand at 315.245 kb on - strand at 315.292 kb on + strand at 315.292 kb on + strand at 315.293 kb on - strand, within HGI48_RS01405 at 315.293 kb on - strand at 315.297 kb on + strand, within HGI48_RS01405 at 315.297 kb on + strand, within HGI48_RS01405 at 315.298 kb on - strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand at 315.324 kb on + strand at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand at 315.328 kb on + strand, within HGI48_RS01405 at 315.462 kb on + strand at 315.462 kb on + strand at 315.462 kb on + strand at 315.463 kb on - strand at 315.463 kb on - strand at 315.463 kb on - strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.473 kb on + strand at 315.473 kb on + strand at 315.473 kb on + strand at 315.474 kb on - strand at 315.474 kb on - strand at 315.474 kb on - strand at 315.506 kb on + strand at 315.507 kb on - strand at 315.535 kb on - strand at 315.538 kb on - strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.597 kb on + strand at 315.598 kb on - strand at 315.598 kb on - strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.734 kb on - strand at 315.734 kb on - strand at 315.761 kb on + strand at 315.776 kb on + strand at 315.776 kb on + strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.779 kb on + strand at 315.806 kb on + strand at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.256 kb on - strand, within HGI48_RS01410 at 316.340 kb on + strand at 316.340 kb on + strand at 316.400 kb on - strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.417 kb on - strand at 316.417 kb on - strand at 316.417 kb on - strand at 316.427 kb on - strand at 316.438 kb on - strand at 316.438 kb on - strand at 316.482 kb on + strand at 316.482 kb on + strand at 316.482 kb on + strand at 316.483 kb on - strand at 316.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 314,043 + HGI48_RS01400 0.52 -0.7 314,172 + HGI48_RS01400 0.59 -0.2 314,172 + HGI48_RS01400 0.59 -0.4 314,173 - +0.1 314,173 - HGI48_RS01400 0.59 -0.6 314,173 - +0.1 314,173 - HGI48_RS01400 0.59 +0.9 314,284 + HGI48_RS01400 0.64 +1.8 314,284 + HGI48_RS01400 0.64 +0.1 314,284 + HGI48_RS01400 0.64 +0.4 314,285 - HGI48_RS01400 0.64 +1.6 314,285 - HGI48_RS01400 0.64 +0.6 314,285 - HGI48_RS01400 0.64 +0.6 314,285 - HGI48_RS01400 0.64 -0.8 314,285 - HGI48_RS01400 0.64 +0.5 314,322 + HGI48_RS01400 0.66 -1.3 314,323 - -0.9 314,419 + HGI48_RS01400 0.71 -0.1 314,419 + +2.4 314,420 - HGI48_RS01400 0.71 -0.8 314,420 - HGI48_RS01400 0.71 +0.1 314,420 - HGI48_RS01400 0.71 +0.6 314,488 + HGI48_RS01400 0.75 -0.4 314,562 + HGI48_RS01400 0.79 +0.1 314,645 + HGI48_RS01400 0.83 -0.3 314,645 + HGI48_RS01400 0.83 +0.3 314,645 + HGI48_RS01400 0.83 -1.2 314,645 + HGI48_RS01400 0.83 +0.1 314,645 + HGI48_RS01400 0.83 +0.9 314,645 + HGI48_RS01400 0.83 +0.9 314,646 - HGI48_RS01400 0.83 +0.6 314,646 - HGI48_RS01400 0.83 -0.0 314,646 - HGI48_RS01400 0.83 +1.2 314,696 + HGI48_RS01400 0.86 +0.5 314,696 + HGI48_RS01400 0.86 +1.2 314,873 + -0.9 314,873 + -0.1 314,873 + +1.0 314,873 + +0.1 314,874 - -0.5 314,874 - -0.6 314,956 + -0.4 314,957 - +0.3 314,986 - +0.0 314,997 + -0.3 315,245 - +1.6 315,292 + +1.6 315,292 + +0.6 315,293 - HGI48_RS01405 0.62 -0.9 315,293 - +1.6 315,297 + HGI48_RS01405 0.62 -0.7 315,297 + HGI48_RS01405 0.62 -0.9 315,298 - HGI48_RS01405 0.63 -1.7 315,324 + HGI48_RS01405 0.68 -0.4 315,324 + HGI48_RS01405 0.68 -0.3 315,324 + HGI48_RS01405 0.68 +0.3 315,324 + HGI48_RS01405 0.68 -1.9 315,324 + +0.1 315,324 + +2.2 315,324 + HGI48_RS01405 0.68 -0.7 315,324 + HGI48_RS01405 0.68 -0.1 315,325 - HGI48_RS01405 0.68 -0.3 315,325 - HGI48_RS01405 0.68 +0.3 315,325 - HGI48_RS01405 0.68 -0.9 315,325 - +0.1 315,325 - HGI48_RS01405 0.68 -1.1 315,325 - -0.9 315,328 + HGI48_RS01405 0.69 +0.2 315,462 + -0.9 315,462 + -0.4 315,462 + -0.9 315,463 - +0.6 315,463 - -1.4 315,463 - -0.4 315,465 + -0.2 315,465 + -1.4 315,465 + +0.6 315,465 + -0.9 315,465 + +0.6 315,465 + -1.5 315,465 + +2.0 315,469 + +1.6 315,469 + +1.2 315,469 + -0.2 315,469 + -0.4 315,469 + +0.6 315,469 + -0.5 315,469 + +0.2 315,469 + -0.4 315,469 + -0.1 315,469 + -0.6 315,469 + -2.5 315,469 + -0.4 315,470 - +0.2 315,470 - +0.9 315,470 - -0.4 315,470 - -1.4 315,470 - -0.7 315,470 - +0.4 315,470 - +0.6 315,470 - -1.1 315,470 - +0.1 315,470 - -0.5 315,473 + -1.4 315,473 + +0.6 315,473 + -0.0 315,474 - +0.2 315,474 - +1.4 315,474 - +2.1 315,506 + -0.1 315,507 - -0.8 315,535 - -0.6 315,538 - -0.9 315,568 + -0.6 315,568 + +1.0 315,568 + +0.1 315,569 - +0.6 315,569 - -1.4 315,569 - +0.0 315,569 - -0.3 315,569 - -0.8 315,569 - -0.8 315,597 + -1.4 315,598 - -0.4 315,598 - -0.0 315,731 + -1.3 315,731 + +0.6 315,731 + +0.6 315,731 + -1.4 315,731 + -0.6 315,731 + +1.2 315,731 + -0.5 315,731 + -0.1 315,731 + +0.6 315,732 - +0.9 315,732 - -0.5 315,732 - +1.6 315,732 - +1.6 315,732 - -0.1 315,733 + -0.6 315,733 + -0.1 315,733 + -0.0 315,734 - -2.0 315,734 - -0.1 315,761 + -0.1 315,776 + +0.8 315,776 + -1.0 315,777 - -0.7 315,777 - -0.5 315,777 - +0.2 315,777 - +1.0 315,777 - -2.7 315,777 - +0.0 315,779 + +0.4 315,806 + -2.2 316,255 + HGI48_RS01410 0.87 -0.1 316,255 + HGI48_RS01410 0.87 -1.5 316,255 + HGI48_RS01410 0.87 -2.4 316,255 + HGI48_RS01410 0.87 -0.0 316,256 - HGI48_RS01410 0.87 -2.4 316,340 + +0.5 316,340 + -0.2 316,400 - +1.5 316,416 + -1.0 316,416 + -0.4 316,416 + -1.0 316,416 + -1.3 316,416 + -2.0 316,417 - -2.0 316,417 - +1.0 316,417 - -0.5 316,427 - +0.3 316,438 - -0.4 316,438 - +0.3 316,482 + +0.6 316,482 + -2.0 316,482 + -0.1 316,483 - -0.7 316,483 - -1.2
Or see this region's nucleotide sequence