Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01000 and HGI48_RS01005 are separated by 87 nucleotides HGI48_RS01005 and HGI48_RS01010 are separated by 194 nucleotides HGI48_RS01010 and HGI48_RS01015 are separated by 121 nucleotides HGI48_RS01015 and HGI48_RS01020 are separated by 282 nucleotides
HGI48_RS01000: HGI48_RS01000 - 16S ribosomal RNA, at 226,834 to 228,378
_RS01000
HGI48_RS01005: HGI48_RS01005 - tRNA-Glu, at 228,466 to 228,541
_RS01005
HGI48_RS01010: HGI48_RS01010 - 23S ribosomal RNA, at 228,736 to 231,661
_RS01010
HGI48_RS01015: HGI48_RS01015 - 5S ribosomal RNA, at 231,783 to 231,898
_RS01015
HGI48_RS01020: HGI48_RS01020 - UDP-N-acetylmuramate dehydrogenase, at 232,181 to 233,218
_RS01020
Position (kb) 228
229
230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 229.384 kb on + strand, within HGI48_RS01010 at 229.602 kb on + strand, within HGI48_RS01010 at 229.602 kb on + strand, within HGI48_RS01010 at 229.602 kb on + strand, within HGI48_RS01010 at 229.602 kb on + strand, within HGI48_RS01010 at 230.007 kb on + strand, within HGI48_RS01010 at 230.007 kb on + strand at 230.007 kb on + strand, within HGI48_RS01010 at 230.007 kb on + strand, within HGI48_RS01010 at 230.011 kb on + strand, within HGI48_RS01010 at 230.011 kb on + strand, within HGI48_RS01010 at 230.011 kb on + strand, within HGI48_RS01010 at 230.704 kb on + strand, within HGI48_RS01010 at 230.935 kb on + strand, within HGI48_RS01010 at 231.606 kb on + strand at 231.606 kb on + strand at 231.661 kb on + strand at 231.661 kb on + strand at 231.661 kb on + strand at 231.661 kb on + strand at 232.065 kb on + strand at 232.126 kb on + strand at 232.127 kb on - strand at 232.144 kb on + strand at 232.144 kb on + strand at 232.144 kb on + strand at 232.149 kb on + strand at 232.149 kb on + strand at 232.149 kb on + strand at 232.149 kb on + strand at 232.149 kb on + strand at 232.177 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 229,384 + HGI48_RS01010 0.22 -1.4 229,602 + HGI48_RS01010 0.30 -0.4 229,602 + HGI48_RS01010 0.30 -0.4 229,602 + HGI48_RS01010 0.30 +0.4 229,602 + HGI48_RS01010 0.30 -0.8 230,007 + HGI48_RS01010 0.43 -1.7 230,007 + +0.6 230,007 + HGI48_RS01010 0.43 -0.0 230,007 + HGI48_RS01010 0.43 -0.4 230,011 + HGI48_RS01010 0.44 +2.1 230,011 + HGI48_RS01010 0.44 +0.3 230,011 + HGI48_RS01010 0.44 -0.2 230,704 + HGI48_RS01010 0.67 -0.7 230,935 + HGI48_RS01010 0.75 -0.5 231,606 + +0.8 231,606 + -1.4 231,661 + +0.3 231,661 + -0.0 231,661 + -1.4 231,661 + -2.9 232,065 + +0.8 232,126 + +0.1 232,127 - +0.9 232,144 + +2.6 232,144 + -0.2 232,144 + +0.1 232,149 + -0.5 232,149 + +0.1 232,149 + +0.1 232,149 + +0.4 232,149 + -0.3 232,177 + -2.2
Or see this region's nucleotide sequence