Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00990 and HGI48_RS00995 are separated by 18 nucleotides HGI48_RS00995 and HGI48_RS01000 are separated by 373 nucleotides HGI48_RS01000 and HGI48_RS01005 are separated by 87 nucleotides HGI48_RS01005 and HGI48_RS01010 are separated by 194 nucleotides
HGI48_RS00990: HGI48_RS00990 - Trk system potassium transporter TrkH, at 224,451 to 225,902
_RS00990
HGI48_RS00995: HGI48_RS00995 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 225,921 to 226,460
_RS00995
HGI48_RS01000: HGI48_RS01000 - 16S ribosomal RNA, at 226,834 to 228,378
_RS01000
HGI48_RS01005: HGI48_RS01005 - tRNA-Glu, at 228,466 to 228,541
_RS01005
HGI48_RS01010: HGI48_RS01010 - 23S ribosomal RNA, at 228,736 to 231,661
_RS01010
Position (kb) 226
227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 225.875 kb on - strand at 225.875 kb on - strand at 225.879 kb on - strand at 225.879 kb on - strand at 225.900 kb on + strand at 225.920 kb on + strand at 225.920 kb on + strand at 226.458 kb on + strand at 226.458 kb on + strand at 226.459 kb on - strand at 226.549 kb on - strand at 226.645 kb on + strand at 227.624 kb on + strand, within HGI48_RS01000
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 225,875 - -1.9 225,875 - -1.5 225,879 - -1.2 225,879 - +0.6 225,900 + -1.4 225,920 + -1.4 225,920 + -1.7 226,458 + -0.5 226,458 + -1.1 226,459 - -2.1 226,549 - +0.9 226,645 + +3.5 227,624 + HGI48_RS01000 0.51 -0.9
Or see this region's nucleotide sequence