Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00275 and HGI48_RS00280 are separated by 165 nucleotides HGI48_RS00280 and HGI48_RS00285 are separated by 266 nucleotides
HGI48_RS00275: HGI48_RS00275 - IS1182 family transposase, at 70,709 to 72,052
_RS00275
HGI48_RS00280: HGI48_RS00280 - methyl-accepting chemotaxis protein, at 72,218 to 74,104
_RS00280
HGI48_RS00285: HGI48_RS00285 - superoxide dismutase [Mn], at 74,371 to 74,997
_RS00285
Position (kb) 72
73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 71.622 kb on + strand, within HGI48_RS00275 at 72.226 kb on + strand at 72.226 kb on + strand at 72.227 kb on - strand at 72.227 kb on - strand at 72.227 kb on - strand at 72.227 kb on - strand at 72.228 kb on + strand at 72.228 kb on + strand at 72.228 kb on + strand at 72.228 kb on + strand at 72.229 kb on - strand at 72.229 kb on - strand at 72.229 kb on - strand at 72.229 kb on - strand at 72.494 kb on + strand, within HGI48_RS00280 at 72.494 kb on + strand, within HGI48_RS00280 at 72.494 kb on + strand, within HGI48_RS00280 at 72.494 kb on + strand, within HGI48_RS00280 at 72.495 kb on - strand, within HGI48_RS00280 at 72.495 kb on - strand at 72.495 kb on - strand, within HGI48_RS00280 at 72.495 kb on - strand, within HGI48_RS00280 at 72.495 kb on - strand, within HGI48_RS00280 at 72.495 kb on - strand, within HGI48_RS00280 at 72.495 kb on - strand at 72.584 kb on - strand, within HGI48_RS00280 at 72.584 kb on - strand, within HGI48_RS00280 at 72.584 kb on - strand, within HGI48_RS00280 at 72.584 kb on - strand, within HGI48_RS00280 at 72.584 kb on - strand, within HGI48_RS00280 at 72.637 kb on + strand, within HGI48_RS00280 at 72.858 kb on - strand, within HGI48_RS00280 at 72.858 kb on - strand, within HGI48_RS00280 at 72.914 kb on + strand, within HGI48_RS00280 at 72.988 kb on + strand at 73.120 kb on + strand, within HGI48_RS00280 at 73.120 kb on + strand, within HGI48_RS00280 at 73.120 kb on + strand at 73.121 kb on - strand at 73.133 kb on + strand, within HGI48_RS00280 at 73.210 kb on + strand, within HGI48_RS00280 at 73.210 kb on + strand, within HGI48_RS00280 at 73.210 kb on + strand, within HGI48_RS00280 at 73.210 kb on + strand at 73.211 kb on - strand, within HGI48_RS00280 at 73.211 kb on - strand, within HGI48_RS00280 at 73.211 kb on - strand, within HGI48_RS00280 at 73.211 kb on - strand, within HGI48_RS00280 at 73.211 kb on - strand at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.393 kb on - strand, within HGI48_RS00280 at 73.405 kb on - strand, within HGI48_RS00280 at 73.405 kb on - strand, within HGI48_RS00280 at 73.412 kb on + strand, within HGI48_RS00280 at 73.425 kb on + strand, within HGI48_RS00280 at 73.426 kb on - strand, within HGI48_RS00280 at 73.426 kb on - strand, within HGI48_RS00280 at 73.438 kb on + strand, within HGI48_RS00280 at 73.438 kb on + strand, within HGI48_RS00280 at 73.439 kb on - strand, within HGI48_RS00280 at 73.489 kb on + strand, within HGI48_RS00280 at 73.619 kb on + strand, within HGI48_RS00280 at 73.619 kb on + strand, within HGI48_RS00280 at 73.619 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand at 73.741 kb on - strand at 73.741 kb on - strand, within HGI48_RS00280 at 73.741 kb on - strand, within HGI48_RS00280 at 73.741 kb on - strand, within HGI48_RS00280 at 73.741 kb on - strand, within HGI48_RS00280 at 73.759 kb on + strand, within HGI48_RS00280 at 73.783 kb on + strand, within HGI48_RS00280 at 73.783 kb on + strand, within HGI48_RS00280 at 73.823 kb on - strand, within HGI48_RS00280 at 73.861 kb on + strand, within HGI48_RS00280 at 73.862 kb on - strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.897 kb on - strand, within HGI48_RS00280 at 73.901 kb on + strand, within HGI48_RS00280 at 73.902 kb on - strand, within HGI48_RS00280 at 73.902 kb on - strand, within HGI48_RS00280 at 73.902 kb on - strand, within HGI48_RS00280 at 73.906 kb on + strand, within HGI48_RS00280 at 73.908 kb on + strand, within HGI48_RS00280 at 73.909 kb on - strand, within HGI48_RS00280 at 74.001 kb on + strand at 74.001 kb on + strand at 74.002 kb on - strand at 74.002 kb on - strand at 74.002 kb on - strand at 74.024 kb on - strand at 74.046 kb on - strand at 74.083 kb on + strand at 74.123 kb on - strand at 74.123 kb on - strand at 74.125 kb on + strand at 74.142 kb on + strand at 74.142 kb on + strand at 74.142 kb on + strand at 74.143 kb on - strand at 74.164 kb on - strand at 74.207 kb on + strand at 74.208 kb on - strand at 74.208 kb on - strand at 74.208 kb on - strand at 74.255 kb on + strand at 74.255 kb on + strand at 74.303 kb on + strand at 74.305 kb on + strand at 74.306 kb on - strand at 74.306 kb on - strand at 74.347 kb on + strand at 74.368 kb on + strand at 74.368 kb on + strand at 74.373 kb on - strand at 75.042 kb on + strand at 75.043 kb on - strand at 75.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 71,622 + HGI48_RS00275 0.68 -0.8 72,226 + +0.2 72,226 + -1.4 72,227 - -1.4 72,227 - +0.6 72,227 - +0.4 72,227 - -2.2 72,228 + -1.9 72,228 + +1.0 72,228 + -0.2 72,228 + -1.9 72,229 - -0.8 72,229 - +0.6 72,229 - -1.9 72,229 - +0.3 72,494 + HGI48_RS00280 0.15 -1.7 72,494 + HGI48_RS00280 0.15 +0.2 72,494 + HGI48_RS00280 0.15 +0.0 72,494 + HGI48_RS00280 0.15 +0.6 72,495 - HGI48_RS00280 0.15 -2.2 72,495 - +0.6 72,495 - HGI48_RS00280 0.15 +0.2 72,495 - HGI48_RS00280 0.15 -0.3 72,495 - HGI48_RS00280 0.15 -0.1 72,495 - HGI48_RS00280 0.15 +0.3 72,495 - +2.2 72,584 - HGI48_RS00280 0.19 +0.4 72,584 - HGI48_RS00280 0.19 +0.1 72,584 - HGI48_RS00280 0.19 +0.9 72,584 - HGI48_RS00280 0.19 -0.7 72,584 - HGI48_RS00280 0.19 -0.4 72,637 + HGI48_RS00280 0.22 -1.1 72,858 - HGI48_RS00280 0.34 +0.1 72,858 - HGI48_RS00280 0.34 -0.5 72,914 + HGI48_RS00280 0.37 -0.8 72,988 + +0.1 73,120 + HGI48_RS00280 0.48 +0.5 73,120 + HGI48_RS00280 0.48 +0.4 73,120 + +0.1 73,121 - +1.1 73,133 + HGI48_RS00280 0.48 -2.4 73,210 + HGI48_RS00280 0.53 +1.1 73,210 + HGI48_RS00280 0.53 -0.4 73,210 + HGI48_RS00280 0.53 -0.2 73,210 + -0.9 73,211 - HGI48_RS00280 0.53 -2.2 73,211 - HGI48_RS00280 0.53 +0.4 73,211 - HGI48_RS00280 0.53 +0.6 73,211 - HGI48_RS00280 0.53 -0.2 73,211 - +1.2 73,212 + HGI48_RS00280 0.53 -0.5 73,212 + HGI48_RS00280 0.53 -1.7 73,212 + +1.4 73,212 + HGI48_RS00280 0.53 -0.4 73,212 + HGI48_RS00280 0.53 +0.0 73,212 + HGI48_RS00280 0.53 +0.2 73,212 + HGI48_RS00280 0.53 -0.6 73,212 + HGI48_RS00280 0.53 -1.7 73,212 + HGI48_RS00280 0.53 +1.0 73,213 - HGI48_RS00280 0.53 -0.4 73,213 - HGI48_RS00280 0.53 -0.9 73,213 - HGI48_RS00280 0.53 +1.5 73,213 - HGI48_RS00280 0.53 -0.3 73,213 - HGI48_RS00280 0.53 -0.2 73,213 - HGI48_RS00280 0.53 +0.4 73,213 - HGI48_RS00280 0.53 -1.4 73,213 - HGI48_RS00280 0.53 +0.7 73,393 - HGI48_RS00280 0.62 +0.5 73,405 - HGI48_RS00280 0.63 +1.1 73,405 - HGI48_RS00280 0.63 -0.5 73,412 + HGI48_RS00280 0.63 -0.0 73,425 + HGI48_RS00280 0.64 +0.6 73,426 - HGI48_RS00280 0.64 -0.7 73,426 - HGI48_RS00280 0.64 -0.0 73,438 + HGI48_RS00280 0.65 -0.2 73,438 + HGI48_RS00280 0.65 +0.2 73,439 - HGI48_RS00280 0.65 -0.7 73,489 + HGI48_RS00280 0.67 +0.8 73,619 + HGI48_RS00280 0.74 +0.6 73,619 + HGI48_RS00280 0.74 +0.2 73,619 + HGI48_RS00280 0.74 -1.5 73,740 + HGI48_RS00280 0.81 +0.4 73,740 + HGI48_RS00280 0.81 +1.3 73,740 + HGI48_RS00280 0.81 -2.2 73,740 + HGI48_RS00280 0.81 +1.9 73,740 + HGI48_RS00280 0.81 +2.0 73,740 + +3.6 73,741 - -0.9 73,741 - HGI48_RS00280 0.81 +0.3 73,741 - HGI48_RS00280 0.81 +0.0 73,741 - HGI48_RS00280 0.81 -0.9 73,741 - HGI48_RS00280 0.81 +0.9 73,759 + HGI48_RS00280 0.82 +0.9 73,783 + HGI48_RS00280 0.83 -0.7 73,783 + HGI48_RS00280 0.83 +1.1 73,823 - HGI48_RS00280 0.85 +0.2 73,861 + HGI48_RS00280 0.87 +0.3 73,862 - HGI48_RS00280 0.87 +0.1 73,896 + HGI48_RS00280 0.89 +1.0 73,896 + HGI48_RS00280 0.89 -1.7 73,896 + HGI48_RS00280 0.89 +0.2 73,896 + HGI48_RS00280 0.89 +0.4 73,896 + HGI48_RS00280 0.89 +0.6 73,896 + HGI48_RS00280 0.89 +0.4 73,897 - HGI48_RS00280 0.89 -0.7 73,901 + HGI48_RS00280 0.89 -0.9 73,902 - HGI48_RS00280 0.89 -0.4 73,902 - HGI48_RS00280 0.89 -1.8 73,902 - HGI48_RS00280 0.89 -0.9 73,906 + HGI48_RS00280 0.89 +0.5 73,908 + HGI48_RS00280 0.90 +0.4 73,909 - HGI48_RS00280 0.90 +0.2 74,001 + +0.4 74,001 + +0.6 74,002 - -0.9 74,002 - -1.7 74,002 - +0.4 74,024 - -2.9 74,046 - -0.0 74,083 + -2.5 74,123 - +0.4 74,123 - +1.6 74,125 + -0.7 74,142 + -0.2 74,142 + -0.9 74,142 + -1.7 74,143 - -0.5 74,164 - -0.9 74,207 + -1.2 74,208 - -0.2 74,208 - +0.5 74,208 - -0.9 74,255 + +1.1 74,255 + -0.1 74,303 + -0.0 74,305 + +1.2 74,306 - -0.1 74,306 - -1.7 74,347 + +0.6 74,368 + +0.4 74,368 + +1.2 74,373 - -0.4 75,042 + -1.1 75,043 - +0.1 75,043 - -0.1
Or see this region's nucleotide sequence