Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00160 and HGI48_RS00165 are separated by 323 nucleotides HGI48_RS00165 and HGI48_RS00170 are separated by 353 nucleotides
HGI48_RS00160: HGI48_RS00160 - TIGR04028 family ABC transporter substrate-binding protein, at 40,322 to 41,965
_RS00160
HGI48_RS00165: HGI48_RS00165 - valine--pyruvate transaminase, at 42,289 to 43,545
_RS00165
HGI48_RS00170: HGI48_RS00170 - aldose 1-epimerase family protein, at 43,899 to 45,107
_RS00170
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.298 kb on + strand, within HGI48_RS00160 at 41.487 kb on + strand at 41.487 kb on + strand, within HGI48_RS00160 at 41.488 kb on - strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.667 kb on + strand, within HGI48_RS00160 at 41.668 kb on - strand, within HGI48_RS00160 at 41.668 kb on - strand at 41.742 kb on + strand, within HGI48_RS00160 at 41.742 kb on + strand, within HGI48_RS00160 at 41.742 kb on + strand, within HGI48_RS00160 at 41.743 kb on - strand, within HGI48_RS00160 at 41.758 kb on + strand at 41.806 kb on + strand at 41.806 kb on + strand at 41.806 kb on + strand at 41.807 kb on - strand at 41.808 kb on + strand at 41.808 kb on + strand at 41.809 kb on - strand at 41.809 kb on - strand at 41.809 kb on - strand at 41.809 kb on - strand at 41.838 kb on + strand at 41.839 kb on - strand at 41.839 kb on - strand at 41.900 kb on + strand at 41.921 kb on + strand at 41.922 kb on - strand at 41.979 kb on + strand at 42.058 kb on - strand at 42.058 kb on - strand at 42.058 kb on - strand at 42.082 kb on + strand at 42.082 kb on + strand at 42.082 kb on + strand at 42.083 kb on - strand at 42.083 kb on - strand at 42.099 kb on - strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.113 kb on - strand at 42.113 kb on - strand at 42.113 kb on - strand at 42.116 kb on + strand at 42.116 kb on + strand at 42.116 kb on + strand at 42.116 kb on + strand at 42.117 kb on - strand at 42.117 kb on - strand at 42.182 kb on - strand at 42.182 kb on - strand at 42.190 kb on - strand at 42.190 kb on - strand at 42.190 kb on - strand at 42.193 kb on + strand at 42.193 kb on + strand at 42.194 kb on - strand at 42.194 kb on - strand at 42.194 kb on - strand at 42.250 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.434 kb on + strand at 42.434 kb on + strand, within HGI48_RS00165 at 42.434 kb on + strand at 42.435 kb on - strand, within HGI48_RS00165 at 42.435 kb on - strand, within HGI48_RS00165 at 42.435 kb on - strand, within HGI48_RS00165 at 42.479 kb on + strand, within HGI48_RS00165 at 42.576 kb on - strand, within HGI48_RS00165 at 42.618 kb on - strand, within HGI48_RS00165 at 42.861 kb on + strand at 42.862 kb on - strand, within HGI48_RS00165 at 42.884 kb on + strand, within HGI48_RS00165 at 43.046 kb on + strand at 43.046 kb on + strand, within HGI48_RS00165 at 43.047 kb on - strand, within HGI48_RS00165 at 43.211 kb on + strand, within HGI48_RS00165 at 43.248 kb on + strand, within HGI48_RS00165 at 43.249 kb on - strand, within HGI48_RS00165 at 43.337 kb on + strand, within HGI48_RS00165 at 43.400 kb on + strand, within HGI48_RS00165 at 43.419 kb on + strand, within HGI48_RS00165 at 43.497 kb on + strand at 43.545 kb on + strand at 43.545 kb on + strand at 43.546 kb on - strand at 43.546 kb on - strand at 43.574 kb on + strand at 43.575 kb on - strand at 43.667 kb on - strand at 43.674 kb on + strand at 43.674 kb on + strand at 43.675 kb on - strand at 43.740 kb on + strand at 43.743 kb on + strand at 43.799 kb on - strand at 43.848 kb on + strand at 43.856 kb on + strand at 43.856 kb on + strand at 43.918 kb on + strand at 43.919 kb on - strand at 43.922 kb on + strand at 43.923 kb on - strand at 43.923 kb on - strand at 44.212 kb on + strand, within HGI48_RS00170 at 44.241 kb on - strand, within HGI48_RS00170 at 44.241 kb on - strand, within HGI48_RS00170 at 44.349 kb on + strand, within HGI48_RS00170 at 44.349 kb on + strand, within HGI48_RS00170 at 44.350 kb on - strand at 44.375 kb on + strand, within HGI48_RS00170 at 44.421 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.499 kb on + strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.500 kb on - strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170 at 44.503 kb on + strand, within HGI48_RS00170
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 41,298 + HGI48_RS00160 0.59 -0.7 41,487 + +1.6 41,487 + HGI48_RS00160 0.71 -2.9 41,488 - HGI48_RS00160 0.71 -0.8 41,529 + HGI48_RS00160 0.73 -0.1 41,529 + HGI48_RS00160 0.73 +0.4 41,529 + HGI48_RS00160 0.73 -0.8 41,529 + HGI48_RS00160 0.73 -1.8 41,529 + HGI48_RS00160 0.73 -1.1 41,530 - HGI48_RS00160 0.73 -1.5 41,530 - HGI48_RS00160 0.73 +0.2 41,530 - HGI48_RS00160 0.73 -1.4 41,530 - HGI48_RS00160 0.73 +0.1 41,667 + HGI48_RS00160 0.82 -0.4 41,668 - HGI48_RS00160 0.82 -0.2 41,668 - -0.9 41,742 + HGI48_RS00160 0.86 -0.7 41,742 + HGI48_RS00160 0.86 +1.5 41,742 + HGI48_RS00160 0.86 -0.4 41,743 - HGI48_RS00160 0.86 -0.4 41,758 + -0.9 41,806 + +0.1 41,806 + -0.8 41,806 + +0.2 41,807 - +0.2 41,808 + +0.6 41,808 + -0.4 41,809 - -1.2 41,809 - -0.0 41,809 - -0.8 41,809 - +1.2 41,838 + -0.4 41,839 - -0.4 41,839 - -0.6 41,900 + -0.1 41,921 + -0.9 41,922 - -0.1 41,979 + +0.4 42,058 - -0.9 42,058 - -1.1 42,058 - +0.1 42,082 + +0.2 42,082 + -0.4 42,082 + -0.8 42,083 - -1.7 42,083 - -0.8 42,099 - -0.4 42,112 + +0.6 42,112 + -0.1 42,112 + +1.1 42,112 + -2.2 42,112 + +0.4 42,112 + -1.9 42,113 - -0.9 42,113 - -2.5 42,113 - +0.2 42,116 + +0.8 42,116 + +0.1 42,116 + -1.9 42,116 + -2.5 42,117 - +0.3 42,117 - +0.6 42,182 - +0.6 42,182 - +0.1 42,190 - +0.2 42,190 - -0.0 42,190 - -0.9 42,193 + -0.1 42,193 + -0.6 42,194 - +0.6 42,194 - -2.0 42,194 - +0.8 42,250 + +1.1 42,374 + -0.9 42,374 + -0.4 42,374 + -0.9 42,374 + +1.1 42,374 + +0.1 42,374 + -1.2 42,374 + -0.9 42,374 + -0.9 42,374 + +1.3 42,374 + +2.1 42,374 + +1.2 42,374 + +1.0 42,374 + -0.2 42,375 - -1.7 42,375 - +0.6 42,375 - +0.4 42,375 - +0.0 42,375 - -1.4 42,375 - +1.9 42,375 - +0.1 42,375 - -0.8 42,434 + +1.4 42,434 + HGI48_RS00165 0.12 +0.5 42,434 + +1.1 42,435 - HGI48_RS00165 0.12 -0.9 42,435 - HGI48_RS00165 0.12 -0.2 42,435 - HGI48_RS00165 0.12 +0.3 42,479 + HGI48_RS00165 0.15 -0.6 42,576 - HGI48_RS00165 0.23 +0.3 42,618 - HGI48_RS00165 0.26 -1.2 42,861 + -0.4 42,862 - HGI48_RS00165 0.46 -0.5 42,884 + HGI48_RS00165 0.47 -1.2 43,046 + +1.6 43,046 + HGI48_RS00165 0.60 -0.8 43,047 - HGI48_RS00165 0.60 -1.8 43,211 + HGI48_RS00165 0.73 -0.4 43,248 + HGI48_RS00165 0.76 -0.5 43,249 - HGI48_RS00165 0.76 -1.9 43,337 + HGI48_RS00165 0.83 +0.4 43,400 + HGI48_RS00165 0.88 -0.4 43,419 + HGI48_RS00165 0.90 +0.9 43,497 + +0.0 43,545 + -0.2 43,545 + +0.3 43,546 - +0.1 43,546 - +1.0 43,574 + -1.2 43,575 - -0.8 43,667 - -0.2 43,674 + -0.4 43,674 + -1.7 43,675 - -1.4 43,740 + -0.5 43,743 + -0.4 43,799 - -0.4 43,848 + +0.4 43,856 + -1.0 43,856 + -0.3 43,918 + +1.6 43,919 - +0.3 43,922 + -0.1 43,923 - -0.4 43,923 - -0.0 44,212 + HGI48_RS00170 0.26 -0.2 44,241 - HGI48_RS00170 0.28 -1.7 44,241 - HGI48_RS00170 0.28 -0.4 44,349 + HGI48_RS00170 0.37 +0.3 44,349 + HGI48_RS00170 0.37 -1.4 44,350 - +0.1 44,375 + HGI48_RS00170 0.39 +1.2 44,421 + HGI48_RS00170 0.43 +0.4 44,499 + HGI48_RS00170 0.50 +1.2 44,499 + HGI48_RS00170 0.50 -2.2 44,499 + HGI48_RS00170 0.50 +0.6 44,499 + HGI48_RS00170 0.50 -0.1 44,499 + HGI48_RS00170 0.50 -2.2 44,500 - HGI48_RS00170 0.50 -0.7 44,500 - HGI48_RS00170 0.50 -0.0 44,500 - HGI48_RS00170 0.50 +0.6 44,500 - HGI48_RS00170 0.50 -1.4 44,503 + HGI48_RS00170 0.50 -1.2 44,503 + HGI48_RS00170 0.50 -0.0 44,503 + HGI48_RS00170 0.50 +0.6
Or see this region's nucleotide sequence