Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00150 and HGI48_RS00155 are separated by 1 nucleotides HGI48_RS00155 and HGI48_RS00160 are separated by 29 nucleotides HGI48_RS00160 and HGI48_RS00165 are separated by 323 nucleotides
HGI48_RS00150: HGI48_RS00150 - ABC transporter permease, at 38,474 to 39,349
_RS00150
HGI48_RS00155: HGI48_RS00155 - ABC transporter permease, at 39,351 to 40,292
_RS00155
HGI48_RS00160: HGI48_RS00160 - TIGR04028 family ABC transporter substrate-binding protein, at 40,322 to 41,965
_RS00160
HGI48_RS00165: HGI48_RS00165 - valine--pyruvate transaminase, at 42,289 to 43,545
_RS00165
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 39.349 kb on + strand at 39.349 kb on + strand at 39.349 kb on + strand at 39.350 kb on - strand at 39.462 kb on + strand, within HGI48_RS00155 at 39.462 kb on + strand, within HGI48_RS00155 at 39.463 kb on - strand, within HGI48_RS00155 at 39.463 kb on - strand, within HGI48_RS00155 at 40.001 kb on + strand, within HGI48_RS00155 at 40.118 kb on - strand, within HGI48_RS00155 at 40.153 kb on - strand, within HGI48_RS00155 at 40.209 kb on + strand at 40.229 kb on + strand at 40.229 kb on + strand at 40.229 kb on + strand at 40.230 kb on - strand at 40.279 kb on + strand at 40.279 kb on + strand at 40.280 kb on - strand at 40.280 kb on - strand at 40.280 kb on - strand at 40.280 kb on - strand at 40.323 kb on + strand at 40.344 kb on + strand at 40.345 kb on - strand at 40.437 kb on + strand at 40.437 kb on + strand at 40.437 kb on + strand at 40.437 kb on + strand at 40.438 kb on - strand at 40.438 kb on - strand at 40.438 kb on - strand at 40.438 kb on - strand at 40.455 kb on + strand at 40.455 kb on + strand at 40.455 kb on + strand at 40.456 kb on - strand at 40.609 kb on - strand, within HGI48_RS00160 at 40.611 kb on + strand, within HGI48_RS00160 at 40.611 kb on + strand, within HGI48_RS00160 at 40.612 kb on - strand, within HGI48_RS00160 at 40.625 kb on + strand, within HGI48_RS00160 at 40.625 kb on + strand, within HGI48_RS00160 at 40.626 kb on - strand, within HGI48_RS00160 at 40.977 kb on + strand, within HGI48_RS00160 at 40.989 kb on + strand, within HGI48_RS00160 at 40.989 kb on + strand, within HGI48_RS00160 at 41.118 kb on + strand, within HGI48_RS00160 at 41.119 kb on - strand, within HGI48_RS00160 at 41.157 kb on + strand, within HGI48_RS00160 at 41.157 kb on + strand, within HGI48_RS00160 at 41.157 kb on + strand, within HGI48_RS00160 at 41.238 kb on + strand, within HGI48_RS00160 at 41.238 kb on + strand, within HGI48_RS00160 at 41.238 kb on + strand, within HGI48_RS00160 at 41.239 kb on - strand, within HGI48_RS00160 at 41.239 kb on - strand at 41.239 kb on - strand, within HGI48_RS00160 at 41.239 kb on - strand, within HGI48_RS00160 at 41.239 kb on - strand, within HGI48_RS00160 at 41.239 kb on - strand, within HGI48_RS00160 at 41.239 kb on - strand, within HGI48_RS00160 at 41.239 kb on - strand at 41.239 kb on - strand, within HGI48_RS00160 at 41.298 kb on + strand, within HGI48_RS00160 at 41.487 kb on + strand at 41.487 kb on + strand, within HGI48_RS00160 at 41.488 kb on - strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.529 kb on + strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.530 kb on - strand, within HGI48_RS00160 at 41.667 kb on + strand, within HGI48_RS00160 at 41.668 kb on - strand, within HGI48_RS00160 at 41.668 kb on - strand at 41.742 kb on + strand, within HGI48_RS00160 at 41.742 kb on + strand, within HGI48_RS00160 at 41.742 kb on + strand, within HGI48_RS00160 at 41.743 kb on - strand, within HGI48_RS00160 at 41.758 kb on + strand at 41.806 kb on + strand at 41.806 kb on + strand at 41.806 kb on + strand at 41.807 kb on - strand at 41.808 kb on + strand at 41.808 kb on + strand at 41.809 kb on - strand at 41.809 kb on - strand at 41.809 kb on - strand at 41.809 kb on - strand at 41.838 kb on + strand at 41.839 kb on - strand at 41.839 kb on - strand at 41.900 kb on + strand at 41.921 kb on + strand at 41.922 kb on - strand at 41.979 kb on + strand at 42.058 kb on - strand at 42.058 kb on - strand at 42.058 kb on - strand at 42.082 kb on + strand at 42.082 kb on + strand at 42.082 kb on + strand at 42.083 kb on - strand at 42.083 kb on - strand at 42.099 kb on - strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.112 kb on + strand at 42.113 kb on - strand at 42.113 kb on - strand at 42.113 kb on - strand at 42.116 kb on + strand at 42.116 kb on + strand at 42.116 kb on + strand at 42.116 kb on + strand at 42.117 kb on - strand at 42.117 kb on - strand at 42.182 kb on - strand at 42.182 kb on - strand at 42.190 kb on - strand at 42.190 kb on - strand at 42.190 kb on - strand at 42.193 kb on + strand at 42.193 kb on + strand at 42.194 kb on - strand at 42.194 kb on - strand at 42.194 kb on - strand at 42.250 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.374 kb on + strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.375 kb on - strand at 42.434 kb on + strand at 42.434 kb on + strand, within HGI48_RS00165 at 42.434 kb on + strand at 42.435 kb on - strand, within HGI48_RS00165 at 42.435 kb on - strand, within HGI48_RS00165 at 42.435 kb on - strand, within HGI48_RS00165 at 42.479 kb on + strand, within HGI48_RS00165 at 42.576 kb on - strand, within HGI48_RS00165 at 42.618 kb on - strand, within HGI48_RS00165 at 42.861 kb on + strand at 42.862 kb on - strand, within HGI48_RS00165 at 42.884 kb on + strand, within HGI48_RS00165
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 39,349 + +0.6 39,349 + -0.6 39,349 + +2.6 39,350 - +1.1 39,462 + HGI48_RS00155 0.12 -2.7 39,462 + HGI48_RS00155 0.12 -1.4 39,463 - HGI48_RS00155 0.12 +0.3 39,463 - HGI48_RS00155 0.12 -1.9 40,001 + HGI48_RS00155 0.69 -0.2 40,118 - HGI48_RS00155 0.81 +0.4 40,153 - HGI48_RS00155 0.85 -3.7 40,209 + +0.9 40,229 + +0.2 40,229 + -1.6 40,229 + +1.1 40,230 - +1.4 40,279 + +0.1 40,279 + +0.9 40,280 - +0.1 40,280 - -0.0 40,280 - +0.6 40,280 - -0.9 40,323 + -1.7 40,344 + +0.6 40,345 - +0.1 40,437 + -0.4 40,437 + -1.4 40,437 + -0.2 40,437 + +0.6 40,438 - +0.3 40,438 - -0.4 40,438 - -0.9 40,438 - -0.9 40,455 + -0.2 40,455 + +0.1 40,455 + -0.5 40,456 - +1.0 40,609 - HGI48_RS00160 0.17 +0.1 40,611 + HGI48_RS00160 0.18 +1.0 40,611 + HGI48_RS00160 0.18 -0.8 40,612 - HGI48_RS00160 0.18 -1.4 40,625 + HGI48_RS00160 0.18 +0.5 40,625 + HGI48_RS00160 0.18 -0.1 40,626 - HGI48_RS00160 0.18 +0.8 40,977 + HGI48_RS00160 0.40 -1.7 40,989 + HGI48_RS00160 0.41 +0.6 40,989 + HGI48_RS00160 0.41 -1.6 41,118 + HGI48_RS00160 0.48 +1.1 41,119 - HGI48_RS00160 0.48 +0.1 41,157 + HGI48_RS00160 0.51 -2.4 41,157 + HGI48_RS00160 0.51 +0.1 41,157 + HGI48_RS00160 0.51 +0.2 41,238 + HGI48_RS00160 0.56 +0.3 41,238 + HGI48_RS00160 0.56 -1.2 41,238 + HGI48_RS00160 0.56 -0.7 41,239 - HGI48_RS00160 0.56 -1.1 41,239 - +0.6 41,239 - HGI48_RS00160 0.56 +0.1 41,239 - HGI48_RS00160 0.56 -0.1 41,239 - HGI48_RS00160 0.56 -1.7 41,239 - HGI48_RS00160 0.56 -1.4 41,239 - HGI48_RS00160 0.56 -0.2 41,239 - +0.6 41,239 - HGI48_RS00160 0.56 -0.1 41,298 + HGI48_RS00160 0.59 -0.7 41,487 + +1.6 41,487 + HGI48_RS00160 0.71 -2.9 41,488 - HGI48_RS00160 0.71 -0.8 41,529 + HGI48_RS00160 0.73 -0.1 41,529 + HGI48_RS00160 0.73 +0.4 41,529 + HGI48_RS00160 0.73 -0.8 41,529 + HGI48_RS00160 0.73 -1.8 41,529 + HGI48_RS00160 0.73 -1.1 41,530 - HGI48_RS00160 0.73 -1.5 41,530 - HGI48_RS00160 0.73 +0.2 41,530 - HGI48_RS00160 0.73 -1.4 41,530 - HGI48_RS00160 0.73 +0.1 41,667 + HGI48_RS00160 0.82 -0.4 41,668 - HGI48_RS00160 0.82 -0.2 41,668 - -0.9 41,742 + HGI48_RS00160 0.86 -0.7 41,742 + HGI48_RS00160 0.86 +1.5 41,742 + HGI48_RS00160 0.86 -0.4 41,743 - HGI48_RS00160 0.86 -0.4 41,758 + -0.9 41,806 + +0.1 41,806 + -0.8 41,806 + +0.2 41,807 - +0.2 41,808 + +0.6 41,808 + -0.4 41,809 - -1.2 41,809 - -0.0 41,809 - -0.8 41,809 - +1.2 41,838 + -0.4 41,839 - -0.4 41,839 - -0.6 41,900 + -0.1 41,921 + -0.9 41,922 - -0.1 41,979 + +0.4 42,058 - -0.9 42,058 - -1.1 42,058 - +0.1 42,082 + +0.2 42,082 + -0.4 42,082 + -0.8 42,083 - -1.7 42,083 - -0.8 42,099 - -0.4 42,112 + +0.6 42,112 + -0.1 42,112 + +1.1 42,112 + -2.2 42,112 + +0.4 42,112 + -1.9 42,113 - -0.9 42,113 - -2.5 42,113 - +0.2 42,116 + +0.8 42,116 + +0.1 42,116 + -1.9 42,116 + -2.5 42,117 - +0.3 42,117 - +0.6 42,182 - +0.6 42,182 - +0.1 42,190 - +0.2 42,190 - -0.0 42,190 - -0.9 42,193 + -0.1 42,193 + -0.6 42,194 - +0.6 42,194 - -2.0 42,194 - +0.8 42,250 + +1.1 42,374 + -0.9 42,374 + -0.4 42,374 + -0.9 42,374 + +1.1 42,374 + +0.1 42,374 + -1.2 42,374 + -0.9 42,374 + -0.9 42,374 + +1.3 42,374 + +2.1 42,374 + +1.2 42,374 + +1.0 42,374 + -0.2 42,375 - -1.7 42,375 - +0.6 42,375 - +0.4 42,375 - +0.0 42,375 - -1.4 42,375 - +1.9 42,375 - +0.1 42,375 - -0.8 42,434 + +1.4 42,434 + HGI48_RS00165 0.12 +0.5 42,434 + +1.1 42,435 - HGI48_RS00165 0.12 -0.9 42,435 - HGI48_RS00165 0.12 -0.2 42,435 - HGI48_RS00165 0.12 +0.3 42,479 + HGI48_RS00165 0.15 -0.6 42,576 - HGI48_RS00165 0.23 +0.3 42,618 - HGI48_RS00165 0.26 -1.2 42,861 + -0.4 42,862 - HGI48_RS00165 0.46 -0.5 42,884 + HGI48_RS00165 0.47 -1.2
Or see this region's nucleotide sequence