Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00060 and HGI48_RS00065 are separated by 321 nucleotides HGI48_RS00065 and HGI48_RS00070 are separated by 542 nucleotides
HGI48_RS00060: HGI48_RS00060 - ribonuclease Z, at 16,688 to 17,602
_RS00060
HGI48_RS00065: HGI48_RS00065 - glutathione-disulfide reductase, at 17,924 to 19,276
_RS00065
HGI48_RS00070: HGI48_RS00070 - MBOAT family protein, at 19,819 to 21,234
_RS00070
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 16.981 kb on + strand, within HGI48_RS00060 at 16.982 kb on - strand, within HGI48_RS00060 at 16.982 kb on - strand, within HGI48_RS00060 at 17.016 kb on + strand, within HGI48_RS00060 at 17.016 kb on + strand, within HGI48_RS00060 at 17.016 kb on + strand, within HGI48_RS00060 at 17.017 kb on - strand, within HGI48_RS00060 at 17.017 kb on - strand, within HGI48_RS00060 at 17.017 kb on - strand, within HGI48_RS00060 at 17.086 kb on - strand, within HGI48_RS00060 at 17.123 kb on + strand, within HGI48_RS00060 at 17.124 kb on - strand, within HGI48_RS00060 at 17.124 kb on - strand, within HGI48_RS00060 at 17.124 kb on - strand, within HGI48_RS00060 at 17.176 kb on - strand at 17.176 kb on - strand, within HGI48_RS00060 at 17.176 kb on - strand, within HGI48_RS00060 at 17.176 kb on - strand, within HGI48_RS00060 at 17.176 kb on - strand, within HGI48_RS00060 at 17.209 kb on + strand, within HGI48_RS00060 at 17.209 kb on + strand, within HGI48_RS00060 at 17.291 kb on - strand, within HGI48_RS00060 at 17.291 kb on - strand at 17.362 kb on + strand, within HGI48_RS00060 at 17.363 kb on - strand, within HGI48_RS00060 at 17.551 kb on + strand at 17.552 kb on - strand at 17.619 kb on + strand at 17.648 kb on + strand at 17.649 kb on - strand at 17.649 kb on - strand at 17.649 kb on - strand at 17.649 kb on - strand at 17.700 kb on + strand at 17.700 kb on + strand at 17.700 kb on + strand at 17.700 kb on + strand at 17.700 kb on + strand at 17.701 kb on - strand at 17.701 kb on - strand at 17.701 kb on - strand at 17.701 kb on - strand at 17.701 kb on - strand at 17.781 kb on - strand at 17.823 kb on + strand at 17.823 kb on + strand at 17.824 kb on - strand at 17.878 kb on + strand at 17.878 kb on + strand at 17.878 kb on + strand at 17.878 kb on + strand at 17.882 kb on + strand at 17.882 kb on + strand at 17.882 kb on + strand at 17.888 kb on + strand at 17.900 kb on - strand at 17.936 kb on + strand at 17.936 kb on + strand at 17.936 kb on + strand at 17.937 kb on - strand at 17.937 kb on - strand at 17.942 kb on + strand at 17.942 kb on + strand at 17.942 kb on + strand at 17.942 kb on + strand at 17.999 kb on + strand at 17.999 kb on + strand at 18.000 kb on - strand at 18.000 kb on - strand at 18.000 kb on - strand at 18.131 kb on + strand, within HGI48_RS00065 at 18.161 kb on - strand, within HGI48_RS00065 at 18.161 kb on - strand, within HGI48_RS00065 at 18.194 kb on + strand, within HGI48_RS00065 at 18.194 kb on + strand, within HGI48_RS00065 at 18.194 kb on + strand at 18.195 kb on - strand, within HGI48_RS00065 at 18.195 kb on - strand, within HGI48_RS00065 at 18.195 kb on - strand at 18.195 kb on - strand at 18.195 kb on - strand, within HGI48_RS00065 at 18.218 kb on + strand, within HGI48_RS00065 at 18.218 kb on + strand, within HGI48_RS00065 at 18.218 kb on + strand at 18.219 kb on - strand, within HGI48_RS00065 at 18.219 kb on - strand, within HGI48_RS00065 at 18.219 kb on - strand, within HGI48_RS00065 at 18.453 kb on - strand, within HGI48_RS00065 at 18.453 kb on - strand, within HGI48_RS00065 at 18.454 kb on + strand, within HGI48_RS00065 at 18.580 kb on + strand, within HGI48_RS00065 at 18.727 kb on + strand, within HGI48_RS00065 at 18.728 kb on - strand, within HGI48_RS00065 at 18.728 kb on - strand, within HGI48_RS00065 at 18.760 kb on + strand, within HGI48_RS00065 at 18.761 kb on - strand, within HGI48_RS00065 at 18.773 kb on + strand, within HGI48_RS00065 at 18.773 kb on + strand, within HGI48_RS00065 at 18.774 kb on - strand, within HGI48_RS00065 at 18.818 kb on + strand, within HGI48_RS00065 at 18.818 kb on + strand, within HGI48_RS00065 at 18.819 kb on - strand, within HGI48_RS00065 at 18.929 kb on + strand, within HGI48_RS00065 at 18.930 kb on - strand, within HGI48_RS00065 at 18.948 kb on + strand, within HGI48_RS00065 at 18.948 kb on + strand, within HGI48_RS00065 at 18.948 kb on + strand, within HGI48_RS00065 at 18.948 kb on + strand, within HGI48_RS00065 at 18.949 kb on - strand, within HGI48_RS00065 at 18.949 kb on - strand, within HGI48_RS00065 at 18.951 kb on + strand, within HGI48_RS00065 at 18.952 kb on - strand, within HGI48_RS00065 at 19.055 kb on - strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand, within HGI48_RS00065 at 19.058 kb on + strand at 19.058 kb on + strand at 19.059 kb on - strand at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.059 kb on - strand, within HGI48_RS00065 at 19.093 kb on + strand, within HGI48_RS00065 at 19.138 kb on - strand, within HGI48_RS00065 at 19.157 kb on - strand at 19.267 kb on + strand at 19.268 kb on - strand at 19.279 kb on + strand at 19.279 kb on + strand at 19.280 kb on - strand at 19.298 kb on + strand at 19.320 kb on - strand at 19.337 kb on - strand at 19.337 kb on - strand at 19.400 kb on + strand at 19.428 kb on + strand at 19.428 kb on + strand at 19.428 kb on + strand at 19.429 kb on - strand at 19.513 kb on - strand at 19.566 kb on + strand at 19.616 kb on + strand at 19.671 kb on + strand at 19.672 kb on - strand at 19.728 kb on + strand at 19.812 kb on + strand at 20.033 kb on - strand, within HGI48_RS00070 at 20.108 kb on - strand, within HGI48_RS00070 at 20.149 kb on + strand, within HGI48_RS00070 at 20.201 kb on + strand, within HGI48_RS00070 at 20.209 kb on + strand, within HGI48_RS00070 at 20.209 kb on + strand, within HGI48_RS00070 at 20.213 kb on + strand at 20.214 kb on - strand, within HGI48_RS00070
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 16,981 + HGI48_RS00060 0.32 -0.2 16,982 - HGI48_RS00060 0.32 -0.6 16,982 - HGI48_RS00060 0.32 +0.2 17,016 + HGI48_RS00060 0.36 -1.7 17,016 + HGI48_RS00060 0.36 +0.3 17,016 + HGI48_RS00060 0.36 -2.4 17,017 - HGI48_RS00060 0.36 -0.2 17,017 - HGI48_RS00060 0.36 -0.8 17,017 - HGI48_RS00060 0.36 +0.5 17,086 - HGI48_RS00060 0.43 -1.3 17,123 + HGI48_RS00060 0.48 +0.4 17,124 - HGI48_RS00060 0.48 +0.1 17,124 - HGI48_RS00060 0.48 -0.9 17,124 - HGI48_RS00060 0.48 +0.1 17,176 - +0.6 17,176 - HGI48_RS00060 0.53 -0.9 17,176 - HGI48_RS00060 0.53 +2.0 17,176 - HGI48_RS00060 0.53 +0.6 17,176 - HGI48_RS00060 0.53 -0.0 17,209 + HGI48_RS00060 0.57 +0.9 17,209 + HGI48_RS00060 0.57 -0.1 17,291 - HGI48_RS00060 0.66 +0.2 17,291 - +2.8 17,362 + HGI48_RS00060 0.74 +1.0 17,363 - HGI48_RS00060 0.74 -1.7 17,551 + +0.3 17,552 - -2.2 17,619 + -0.9 17,648 + +1.1 17,649 - +0.1 17,649 - +0.2 17,649 - -0.9 17,649 - +0.3 17,700 + +1.4 17,700 + +0.1 17,700 + -0.7 17,700 + -0.5 17,700 + +0.5 17,701 - +0.5 17,701 - -0.1 17,701 - -0.5 17,701 - +1.1 17,701 - +1.4 17,781 - +1.0 17,823 + +0.5 17,823 + -0.7 17,824 - -0.7 17,878 + +0.5 17,878 + -0.9 17,878 + +0.1 17,878 + -0.0 17,882 + +0.6 17,882 + -0.9 17,882 + +0.2 17,888 + +0.6 17,900 - -0.1 17,936 + +0.1 17,936 + +0.2 17,936 + +0.6 17,937 - -0.2 17,937 - +0.2 17,942 + -0.4 17,942 + -0.0 17,942 + +0.3 17,942 + +0.2 17,999 + +0.6 17,999 + -0.5 18,000 - +1.0 18,000 - +0.4 18,000 - -0.0 18,131 + HGI48_RS00065 0.15 -1.5 18,161 - HGI48_RS00065 0.18 -1.5 18,161 - HGI48_RS00065 0.18 -0.2 18,194 + HGI48_RS00065 0.20 +0.2 18,194 + HGI48_RS00065 0.20 -1.9 18,194 + +1.2 18,195 - HGI48_RS00065 0.20 +0.4 18,195 - HGI48_RS00065 0.20 -2.2 18,195 - -0.9 18,195 - +1.1 18,195 - HGI48_RS00065 0.20 -0.1 18,218 + HGI48_RS00065 0.22 -0.9 18,218 + HGI48_RS00065 0.22 -0.7 18,218 + +0.6 18,219 - HGI48_RS00065 0.22 -0.0 18,219 - HGI48_RS00065 0.22 +0.8 18,219 - HGI48_RS00065 0.22 -0.1 18,453 - HGI48_RS00065 0.39 -0.1 18,453 - HGI48_RS00065 0.39 -1.5 18,454 + HGI48_RS00065 0.39 -1.6 18,580 + HGI48_RS00065 0.48 -0.5 18,727 + HGI48_RS00065 0.59 +0.1 18,728 - HGI48_RS00065 0.59 -0.0 18,728 - HGI48_RS00065 0.59 -0.4 18,760 + HGI48_RS00065 0.62 +0.7 18,761 - HGI48_RS00065 0.62 -2.2 18,773 + HGI48_RS00065 0.63 -1.1 18,773 + HGI48_RS00065 0.63 -1.9 18,774 - HGI48_RS00065 0.63 +0.3 18,818 + HGI48_RS00065 0.66 -0.9 18,818 + HGI48_RS00065 0.66 -0.4 18,819 - HGI48_RS00065 0.66 -0.4 18,929 + HGI48_RS00065 0.74 +0.9 18,930 - HGI48_RS00065 0.74 -0.1 18,948 + HGI48_RS00065 0.76 -0.7 18,948 + HGI48_RS00065 0.76 +0.6 18,948 + HGI48_RS00065 0.76 +0.2 18,948 + HGI48_RS00065 0.76 -1.9 18,949 - HGI48_RS00065 0.76 -1.9 18,949 - HGI48_RS00065 0.76 +0.0 18,951 + HGI48_RS00065 0.76 -0.3 18,952 - HGI48_RS00065 0.76 -0.6 19,055 - HGI48_RS00065 0.84 -1.4 19,058 + HGI48_RS00065 0.84 -0.2 19,058 + HGI48_RS00065 0.84 +0.8 19,058 + HGI48_RS00065 0.84 +0.6 19,058 + HGI48_RS00065 0.84 -0.5 19,058 + HGI48_RS00065 0.84 +0.4 19,058 + HGI48_RS00065 0.84 -0.9 19,058 + HGI48_RS00065 0.84 -0.3 19,058 + HGI48_RS00065 0.84 -0.3 19,058 + HGI48_RS00065 0.84 -0.8 19,058 + +1.2 19,058 + -0.4 19,059 - -0.9 19,059 - HGI48_RS00065 0.84 +1.0 19,059 - HGI48_RS00065 0.84 -0.1 19,059 - HGI48_RS00065 0.84 -0.2 19,059 - HGI48_RS00065 0.84 +0.2 19,059 - HGI48_RS00065 0.84 -0.7 19,059 - HGI48_RS00065 0.84 -1.7 19,059 - HGI48_RS00065 0.84 -0.1 19,059 - HGI48_RS00065 0.84 +0.2 19,059 - HGI48_RS00065 0.84 -0.1 19,059 - HGI48_RS00065 0.84 -0.2 19,093 + HGI48_RS00065 0.86 +0.3 19,138 - HGI48_RS00065 0.90 -0.4 19,157 - +0.6 19,267 + +0.2 19,268 - -1.2 19,279 + +0.3 19,279 + -0.2 19,280 - -1.2 19,298 + +1.0 19,320 - -0.8 19,337 - +0.3 19,337 - -1.4 19,400 + +0.5 19,428 + -0.2 19,428 + +0.9 19,428 + -1.4 19,429 - -0.6 19,513 - +1.4 19,566 + +1.6 19,616 + -1.4 19,671 + +0.2 19,672 - -0.2 19,728 + -0.2 19,812 + +1.6 20,033 - HGI48_RS00070 0.15 -2.1 20,108 - HGI48_RS00070 0.20 -0.2 20,149 + HGI48_RS00070 0.23 +0.1 20,201 + HGI48_RS00070 0.27 +1.2 20,209 + HGI48_RS00070 0.28 -0.9 20,209 + HGI48_RS00070 0.28 -0.4 20,213 + +0.1 20,214 - HGI48_RS00070 0.28 -0.1
Or see this region's nucleotide sequence