Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20225

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,515,707	-				-0.7
4,515,722	-				+0.3
4,515,800	-				-1.2
4,515,845	-				+0.3
4,515,932	-				+1.2
4,515,939	-				-1.4
4,515,978	-				+0.5
4,515,982	-				-0.6
4,516,006	-				-2.0
4,516,006	-				+0.0
4,516,192	-		HGI48_RS20220	0.31	+1.5
4,516,205	+				+0.4
4,516,218	+		HGI48_RS20220	0.39	-1.3
4,516,239	+		HGI48_RS20220	0.46	-0.8
4,516,239	+		HGI48_RS20220	0.46	-0.5
4,516,348	+		HGI48_RS20220	0.79	-2.2
4,516,349	-		HGI48_RS20220	0.79	-1.6
4,516,349	-		HGI48_RS20220	0.79	-1.7
4,516,402	-				-0.6
4,516,435	-				-1.0
4,516,435	-				+0.6
4,516,435	-				-1.6
4,516,435	-				-0.6
4,516,454	-				-1.9
4,516,454	-				+0.0
4,516,468	-				+0.4
4,516,482	-				-0.6
4,516,494	-				+1.2
4,516,511	+				-1.0
4,516,511	+				+0.4
4,516,512	-				-0.9
4,516,523	-				-0.2
4,516,523	-				-0.4
4,516,523	-				-0.6
4,516,527	+				-1.5
4,516,536	-				+0.0
4,516,733	+		HGI48_RS20225	0.15	+0.1
4,516,733	+		HGI48_RS20225	0.15	+0.6
4,516,744	-		HGI48_RS20225	0.16	-2.3
4,516,744	-				+0.0
4,516,744	-				-0.6
4,517,000	+		HGI48_RS20225	0.36	-2.7
4,517,046	+				-0.6
4,517,046	+		HGI48_RS20225	0.40	-0.1
4,517,046	+		HGI48_RS20225	0.40	+0.1
4,517,046	+		HGI48_RS20225	0.40	-2.8
4,517,046	+		HGI48_RS20225	0.40	-0.2
4,517,047	-		HGI48_RS20225	0.40	+0.3
4,517,061	-		HGI48_RS20225	0.41	-0.6
4,517,137	+				+1.6
4,517,138	-				-0.6
4,517,143	-		HGI48_RS20225	0.47	-0.7
4,517,187	+		HGI48_RS20225	0.51	-0.6
4,517,244	+		HGI48_RS20225	0.55	-0.8
4,517,245	-		HGI48_RS20225	0.55	-0.1
4,517,348	+		HGI48_RS20225	0.63	+0.3
4,517,348	+				+0.4
4,517,348	+		HGI48_RS20225	0.63	-1.3
4,517,349	-		HGI48_RS20225	0.63	+0.3
4,517,349	-		HGI48_RS20225	0.63	+0.0
4,517,349	-		HGI48_RS20225	0.63	-0.2
4,517,498	+		HGI48_RS20225	0.75	-0.6
4,517,499	-		HGI48_RS20225	0.75	-1.8
4,517,518	+		HGI48_RS20225	0.76	-0.3
4,517,518	+		HGI48_RS20225	0.76	+0.3
4,517,518	+		HGI48_RS20225	0.76	+0.0
4,517,518	+		HGI48_RS20225	0.76	+0.7
4,517,518	+		HGI48_RS20225	0.76	+0.6
4,517,519	-		HGI48_RS20225	0.76	-1.3
4,517,519	-		HGI48_RS20225	0.76	-1.2
4,517,519	-		HGI48_RS20225	0.76	+1.0
4,517,527	-		HGI48_RS20225	0.77	+0.0
4,517,527	-		HGI48_RS20225	0.77	-1.0
4,517,553	+		HGI48_RS20225	0.79	-0.7
4,517,554	-				+1.6
4,517,554	-		HGI48_RS20225	0.79	-0.2
4,517,625	+		HGI48_RS20225	0.85	-1.0
4,517,625	+		HGI48_RS20225	0.85	-1.0
4,517,626	-		HGI48_RS20225	0.85	-0.7
4,517,626	-		HGI48_RS20225	0.85	-1.3
4,517,626	-		HGI48_RS20225	0.85	-0.3
4,517,626	-		HGI48_RS20225	0.85	+0.3
4,517,655	+		HGI48_RS20225	0.87	-1.8
4,517,655	+		HGI48_RS20225	0.87	-1.0
4,517,655	+		HGI48_RS20225	0.87	+0.3
4,517,656	-		HGI48_RS20225	0.87	-0.9
4,517,656	-		HGI48_RS20225	0.87	-0.2
4,517,656	-		HGI48_RS20225	0.87	+0.3
4,517,656	-		HGI48_RS20225	0.87	+0.7
4,517,657	+		HGI48_RS20225	0.87	+0.6
4,517,657	+		HGI48_RS20225	0.87	-0.6
4,517,658	-		HGI48_RS20225	0.87	-1.3
4,517,669	+		HGI48_RS20225	0.88	-1.1
4,517,669	+		HGI48_RS20225	0.88	+0.6
4,517,685	+		HGI48_RS20225	0.89	-0.3
4,517,685	+		HGI48_RS20225	0.89	-2.0
4,517,685	+		HGI48_RS20225	0.89	-1.6
4,517,685	+				-0.6
4,517,685	+		HGI48_RS20225	0.89	-0.5
4,517,686	-		HGI48_RS20225	0.89	-0.3
4,517,686	-		HGI48_RS20225	0.89	+0.2
4,517,686	-		HGI48_RS20225	0.89	+0.2
4,517,808	-				-0.9
4,517,851	+				-0.9
4,517,852	-				-1.0
4,517,867	+				+0.3
4,517,919	-				+0.6
4,517,943	+				+1.6
4,517,943	+				-0.9
4,517,944	-				+0.7
4,517,944	-				-0.3
4,518,066	-		HGI48_RS20230	0.16	+0.6
4,518,186	+		HGI48_RS20230	0.24	-1.3
4,518,186	+		HGI48_RS20230	0.24	-1.0
4,518,187	-		HGI48_RS20230	0.24	-1.6
4,518,187	-				+1.0
4,518,187	-		HGI48_RS20230	0.24	-0.9
4,518,187	-		HGI48_RS20230	0.24	-0.6
4,518,190	+		HGI48_RS20230	0.24	-1.8
4,518,191	-		HGI48_RS20230	0.24	-1.0
4,518,191	-		HGI48_RS20230	0.24	+0.3
4,518,517	+		HGI48_RS20230	0.46	-0.3
4,518,517	+		HGI48_RS20230	0.46	-1.7
4,518,517	+		HGI48_RS20230	0.46	+0.4
4,518,517	+		HGI48_RS20230	0.46	+1.3
4,518,517	+		HGI48_RS20230	0.46	-1.0
4,518,517	+		HGI48_RS20230	0.46	+0.2
4,518,517	+		HGI48_RS20230	0.46	-1.1
4,518,517	+		HGI48_RS20230	0.46	-2.2
4,518,518	-		HGI48_RS20230	0.46	+1.0
4,518,518	-		HGI48_RS20230	0.46	-0.6
4,518,518	-		HGI48_RS20230	0.46	+0.2
4,518,518	-		HGI48_RS20230	0.46	-0.9
4,518,518	-		HGI48_RS20230	0.46	+0.8