Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20185 and HGI48_RS20190 are separated by 34 nucleotides HGI48_RS20190 and HGI48_RS20195 are separated by 47 nucleotides
HGI48_RS20185: HGI48_RS20185 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 4,507,535 to 4,508,665
_RS20185
HGI48_RS20190: HGI48_RS20190 - dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase, at 4,508,700 to 4,509,416
_RS20190
HGI48_RS20195: HGI48_RS20195 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 4,509,464 to 4,510,729
_RS20195
Position (kb)
4508
4509
4510 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4507.704 kb on + strand at 4507.738 kb on + strand, within HGI48_RS20185 at 4507.739 kb on - strand, within HGI48_RS20185 at 4507.739 kb on - strand, within HGI48_RS20185 at 4507.748 kb on - strand, within HGI48_RS20185 at 4507.821 kb on - strand, within HGI48_RS20185 at 4507.875 kb on + strand, within HGI48_RS20185 at 4507.875 kb on + strand, within HGI48_RS20185 at 4507.876 kb on - strand, within HGI48_RS20185 at 4507.887 kb on - strand, within HGI48_RS20185 at 4507.941 kb on + strand, within HGI48_RS20185 at 4507.941 kb on + strand, within HGI48_RS20185 at 4507.941 kb on + strand, within HGI48_RS20185 at 4507.942 kb on - strand, within HGI48_RS20185 at 4507.995 kb on + strand, within HGI48_RS20185 at 4507.995 kb on + strand, within HGI48_RS20185 at 4507.995 kb on + strand, within HGI48_RS20185 at 4507.996 kb on - strand, within HGI48_RS20185 at 4507.996 kb on - strand, within HGI48_RS20185 at 4507.996 kb on - strand, within HGI48_RS20185 at 4507.996 kb on - strand, within HGI48_RS20185 at 4507.996 kb on - strand, within HGI48_RS20185 at 4507.996 kb on - strand, within HGI48_RS20185 at 4507.996 kb on - strand, within HGI48_RS20185 at 4507.996 kb on - strand at 4507.996 kb on - strand, within HGI48_RS20185 at 4507.996 kb on - strand, within HGI48_RS20185 at 4507.999 kb on + strand, within HGI48_RS20185 at 4508.092 kb on + strand, within HGI48_RS20185 at 4508.317 kb on + strand, within HGI48_RS20185 at 4508.317 kb on + strand, within HGI48_RS20185 at 4508.317 kb on + strand, within HGI48_RS20185 at 4508.317 kb on + strand, within HGI48_RS20185 at 4508.317 kb on + strand, within HGI48_RS20185 at 4508.318 kb on - strand, within HGI48_RS20185 at 4508.430 kb on + strand, within HGI48_RS20185 at 4508.430 kb on + strand, within HGI48_RS20185 at 4508.430 kb on + strand, within HGI48_RS20185 at 4508.430 kb on + strand, within HGI48_RS20185 at 4508.431 kb on - strand, within HGI48_RS20185 at 4508.519 kb on + strand, within HGI48_RS20185 at 4508.519 kb on + strand at 4508.520 kb on - strand, within HGI48_RS20185 at 4508.520 kb on - strand at 4508.520 kb on - strand, within HGI48_RS20185 at 4508.520 kb on - strand at 4508.520 kb on - strand, within HGI48_RS20185 at 4508.538 kb on + strand, within HGI48_RS20185 at 4508.539 kb on - strand, within HGI48_RS20185 at 4508.539 kb on - strand, within HGI48_RS20185 at 4508.617 kb on + strand at 4508.617 kb on + strand at 4508.617 kb on + strand at 4508.618 kb on - strand at 4508.618 kb on - strand at 4508.618 kb on - strand at 4508.618 kb on - strand at 4508.618 kb on - strand at 4508.618 kb on - strand at 4508.618 kb on - strand at 4508.618 kb on - strand at 4508.618 kb on - strand at 4508.619 kb on + strand at 4508.619 kb on + strand at 4508.619 kb on + strand at 4508.619 kb on + strand at 4508.619 kb on + strand at 4508.619 kb on + strand at 4508.619 kb on + strand at 4508.619 kb on + strand at 4508.619 kb on + strand at 4508.620 kb on - strand at 4508.620 kb on - strand at 4508.620 kb on - strand at 4508.620 kb on - strand at 4508.620 kb on - strand at 4508.620 kb on - strand at 4508.620 kb on - strand at 4508.653 kb on + strand at 4508.752 kb on + strand at 4508.753 kb on - strand at 4509.025 kb on + strand, within HGI48_RS20190 at 4509.276 kb on + strand, within HGI48_RS20190 at 4509.276 kb on + strand, within HGI48_RS20190 at 4509.276 kb on + strand, within HGI48_RS20190 at 4509.277 kb on - strand, within HGI48_RS20190 at 4509.277 kb on - strand, within HGI48_RS20190 at 4509.277 kb on - strand, within HGI48_RS20190 at 4509.283 kb on + strand, within HGI48_RS20190 at 4509.283 kb on + strand, within HGI48_RS20190 at 4509.347 kb on + strand at 4509.347 kb on + strand at 4509.348 kb on - strand at 4509.348 kb on - strand at 4509.348 kb on - strand at 4509.416 kb on + strand at 4509.416 kb on + strand at 4509.416 kb on + strand at 4509.416 kb on + strand at 4509.416 kb on + strand at 4509.416 kb on + strand at 4509.416 kb on + strand at 4509.416 kb on + strand at 4509.416 kb on + strand at 4509.416 kb on + strand at 4509.416 kb on + strand at 4509.416 kb on + strand at 4509.416 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.417 kb on - strand at 4509.638 kb on - strand, within HGI48_RS20195 at 4509.908 kb on - strand, within HGI48_RS20195 at 4509.959 kb on + strand, within HGI48_RS20195 at 4510.064 kb on + strand, within HGI48_RS20195 at 4510.064 kb on + strand, within HGI48_RS20195 at 4510.064 kb on + strand, within HGI48_RS20195 at 4510.064 kb on + strand, within HGI48_RS20195 at 4510.065 kb on - strand at 4510.065 kb on - strand, within HGI48_RS20195 at 4510.065 kb on - strand, within HGI48_RS20195 at 4510.065 kb on - strand, within HGI48_RS20195 at 4510.126 kb on + strand, within HGI48_RS20195 at 4510.126 kb on + strand, within HGI48_RS20195 at 4510.126 kb on + strand, within HGI48_RS20195 at 4510.126 kb on + strand, within HGI48_RS20195 at 4510.126 kb on + strand, within HGI48_RS20195 at 4510.126 kb on + strand, within HGI48_RS20195 at 4510.127 kb on - strand, within HGI48_RS20195 at 4510.127 kb on - strand, within HGI48_RS20195
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,507,704 + +1.4 4,507,738 + HGI48_RS20185 0.18 -0.4 4,507,739 - HGI48_RS20185 0.18 +0.1 4,507,739 - HGI48_RS20185 0.18 +0.5 4,507,748 - HGI48_RS20185 0.19 +0.5 4,507,821 - HGI48_RS20185 0.25 -1.0 4,507,875 + HGI48_RS20185 0.30 +0.0 4,507,875 + HGI48_RS20185 0.30 +0.0 4,507,876 - HGI48_RS20185 0.30 -0.3 4,507,887 - HGI48_RS20185 0.31 -0.8 4,507,941 + HGI48_RS20185 0.36 +1.3 4,507,941 + HGI48_RS20185 0.36 -0.4 4,507,941 + HGI48_RS20185 0.36 -0.4 4,507,942 - HGI48_RS20185 0.36 +2.3 4,507,995 + HGI48_RS20185 0.41 +1.4 4,507,995 + HGI48_RS20185 0.41 +0.0 4,507,995 + HGI48_RS20185 0.41 -1.0 4,507,996 - HGI48_RS20185 0.41 +0.4 4,507,996 - HGI48_RS20185 0.41 -0.2 4,507,996 - HGI48_RS20185 0.41 -0.2 4,507,996 - HGI48_RS20185 0.41 +0.1 4,507,996 - HGI48_RS20185 0.41 -0.4 4,507,996 - HGI48_RS20185 0.41 +0.2 4,507,996 - HGI48_RS20185 0.41 +0.1 4,507,996 - +1.0 4,507,996 - HGI48_RS20185 0.41 -1.2 4,507,996 - HGI48_RS20185 0.41 +0.3 4,507,999 + HGI48_RS20185 0.41 +1.0 4,508,092 + HGI48_RS20185 0.49 -0.7 4,508,317 + HGI48_RS20185 0.69 +0.3 4,508,317 + HGI48_RS20185 0.69 -0.9 4,508,317 + HGI48_RS20185 0.69 +0.6 4,508,317 + HGI48_RS20185 0.69 -0.7 4,508,317 + HGI48_RS20185 0.69 -0.4 4,508,318 - HGI48_RS20185 0.69 +1.2 4,508,430 + HGI48_RS20185 0.79 -2.2 4,508,430 + HGI48_RS20185 0.79 -0.4 4,508,430 + HGI48_RS20185 0.79 +0.4 4,508,430 + HGI48_RS20185 0.79 -0.2 4,508,431 - HGI48_RS20185 0.79 -0.7 4,508,519 + HGI48_RS20185 0.87 +0.8 4,508,519 + +1.0 4,508,520 - HGI48_RS20185 0.87 -0.3 4,508,520 - +3.6 4,508,520 - HGI48_RS20185 0.87 +0.4 4,508,520 - +1.0 4,508,520 - HGI48_RS20185 0.87 +0.4 4,508,538 + HGI48_RS20185 0.89 -0.8 4,508,539 - HGI48_RS20185 0.89 -0.3 4,508,539 - HGI48_RS20185 0.89 -2.5 4,508,617 + -0.1 4,508,617 + -0.6 4,508,617 + -0.8 4,508,618 - +0.4 4,508,618 - +1.0 4,508,618 - -0.1 4,508,618 - -0.4 4,508,618 - +0.0 4,508,618 - +0.3 4,508,618 - +0.7 4,508,618 - -0.3 4,508,618 - +0.2 4,508,619 + +2.0 4,508,619 + -1.2 4,508,619 + -1.0 4,508,619 + +1.0 4,508,619 + +0.0 4,508,619 + +0.6 4,508,619 + +0.7 4,508,619 + +1.0 4,508,619 + -1.8 4,508,620 - -1.1 4,508,620 - +0.7 4,508,620 - +3.0 4,508,620 - -2.3 4,508,620 - +0.3 4,508,620 - -0.5 4,508,620 - -1.3 4,508,653 + +0.4 4,508,752 + +0.7 4,508,753 - +0.4 4,509,025 + HGI48_RS20190 0.45 +1.0 4,509,276 + HGI48_RS20190 0.80 -1.0 4,509,276 + HGI48_RS20190 0.80 +0.5 4,509,276 + HGI48_RS20190 0.80 +0.3 4,509,277 - HGI48_RS20190 0.80 +0.7 4,509,277 - HGI48_RS20190 0.80 +1.0 4,509,277 - HGI48_RS20190 0.80 -0.3 4,509,283 + HGI48_RS20190 0.81 +0.0 4,509,283 + HGI48_RS20190 0.81 +0.6 4,509,347 + +0.7 4,509,347 + -1.4 4,509,348 - +1.0 4,509,348 - -0.3 4,509,348 - +0.8 4,509,416 + -0.8 4,509,416 + +0.2 4,509,416 + -0.6 4,509,416 + -1.2 4,509,416 + +0.4 4,509,416 + -0.4 4,509,416 + -0.6 4,509,416 + +0.1 4,509,416 + -0.6 4,509,416 + +0.0 4,509,416 + -2.2 4,509,416 + -0.5 4,509,416 - +0.3 4,509,417 - +0.6 4,509,417 - +0.5 4,509,417 - +2.0 4,509,417 - +1.5 4,509,417 - +0.2 4,509,417 - -0.6 4,509,417 - -0.5 4,509,417 - +2.4 4,509,417 - -1.2 4,509,417 - -0.6 4,509,417 - -0.3 4,509,417 - -0.9 4,509,417 - +1.6 4,509,417 - +0.8 4,509,638 - HGI48_RS20195 0.14 -1.0 4,509,908 - HGI48_RS20195 0.35 -0.8 4,509,959 + HGI48_RS20195 0.39 -0.3 4,510,064 + HGI48_RS20195 0.47 -0.8 4,510,064 + HGI48_RS20195 0.47 +0.5 4,510,064 + HGI48_RS20195 0.47 -0.7 4,510,064 + HGI48_RS20195 0.47 -0.4 4,510,065 - +0.4 4,510,065 - HGI48_RS20195 0.47 -1.0 4,510,065 - HGI48_RS20195 0.47 +0.1 4,510,065 - HGI48_RS20195 0.47 -1.0 4,510,126 + HGI48_RS20195 0.52 +0.6 4,510,126 + HGI48_RS20195 0.52 -0.6 4,510,126 + HGI48_RS20195 0.52 +0.1 4,510,126 + HGI48_RS20195 0.52 -0.6 4,510,126 + HGI48_RS20195 0.52 +0.0 4,510,126 + HGI48_RS20195 0.52 -0.6 4,510,127 - HGI48_RS20195 0.52 -2.2 4,510,127 - HGI48_RS20195 0.52 -0.2
Or see this region's nucleotide sequence