Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20050 and HGI48_RS20055 overlap by 4 nucleotides HGI48_RS20055 and HGI48_RS20060 are separated by 88 nucleotides HGI48_RS20060 and HGI48_RS20065 are separated by 59 nucleotides HGI48_RS20065 and HGI48_RS20070 are separated by 94 nucleotides
HGI48_RS20050: HGI48_RS20050 - DUF484 domain-containing protein, at 4,482,554 to 4,483,255
_RS20050
HGI48_RS20055: HGI48_RS20055 - diaminopimelate epimerase, at 4,483,252 to 4,484,076
_RS20055
HGI48_RS20060: HGI48_RS20060 - lipoprotein, at 4,484,165 to 4,484,347
_RS20060
HGI48_RS20065: HGI48_RS20065 - iron donor protein CyaY, at 4,484,407 to 4,484,727
_RS20065
HGI48_RS20070: HGI48_RS20070 - class I adenylate cyclase, at 4,484,822 to 4,487,380
_RS20070
Position (kb)
4484
4485 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4483.194 kb on + strand at 4483.194 kb on + strand at 4483.195 kb on - strand at 4483.195 kb on - strand at 4483.255 kb on + strand at 4483.263 kb on + strand at 4483.264 kb on - strand at 4483.264 kb on - strand at 4483.264 kb on - strand at 4484.166 kb on + strand at 4484.354 kb on - strand at 4484.354 kb on - strand at 4484.357 kb on + strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.358 kb on - strand at 4484.367 kb on - strand at 4484.451 kb on - strand, within HGI48_RS20065 at 4484.716 kb on + strand at 4484.716 kb on + strand at 4484.716 kb on + strand at 4484.716 kb on + strand at 4484.717 kb on - strand at 4484.747 kb on + strand at 4484.752 kb on + strand at 4484.752 kb on + strand at 4484.753 kb on - strand at 4484.753 kb on - strand at 4484.753 kb on - strand at 4484.888 kb on + strand at 4484.888 kb on + strand at 4484.888 kb on + strand at 4484.888 kb on + strand at 4484.889 kb on - strand at 4484.889 kb on - strand at 4484.889 kb on - strand at 4484.889 kb on - strand at 4484.889 kb on - strand at 4484.889 kb on - strand at 4484.889 kb on - strand at 4484.889 kb on - strand at 4484.889 kb on - strand at 4484.955 kb on + strand at 4485.022 kb on - strand at 4485.076 kb on - strand at 4485.109 kb on - strand, within HGI48_RS20070 at 4485.112 kb on + strand, within HGI48_RS20070 at 4485.262 kb on - strand, within HGI48_RS20070
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,483,194 + +1.4 4,483,194 + +0.0 4,483,195 - -0.6 4,483,195 - -0.6 4,483,255 + -0.6 4,483,263 + -0.3 4,483,264 - -1.3 4,483,264 - -0.3 4,483,264 - +0.3 4,484,166 + -0.6 4,484,354 - -0.8 4,484,354 - -0.4 4,484,357 + +0.0 4,484,358 - -1.3 4,484,358 - +1.6 4,484,358 - +0.4 4,484,358 - +0.3 4,484,358 - -1.6 4,484,358 - +2.0 4,484,358 - -0.4 4,484,358 - -1.8 4,484,358 - +0.7 4,484,358 - +0.3 4,484,358 - -0.2 4,484,358 - +1.5 4,484,358 - -2.5 4,484,358 - -0.9 4,484,358 - +0.4 4,484,367 - -0.8 4,484,451 - HGI48_RS20065 0.14 +0.0 4,484,716 + -1.3 4,484,716 + +0.4 4,484,716 + +0.8 4,484,716 + -1.3 4,484,717 - -0.6 4,484,747 + -0.2 4,484,752 + -0.2 4,484,752 + -0.2 4,484,753 - +1.3 4,484,753 - +1.0 4,484,753 - -1.3 4,484,888 + +0.0 4,484,888 + -0.6 4,484,888 + +1.3 4,484,888 + -0.6 4,484,889 - +0.5 4,484,889 - -0.6 4,484,889 - +0.4 4,484,889 - -0.1 4,484,889 - -0.1 4,484,889 - -2.0 4,484,889 - +0.4 4,484,889 - -0.4 4,484,889 - -0.4 4,484,955 + -2.2 4,485,022 - -1.1 4,485,076 - +1.0 4,485,109 - HGI48_RS20070 0.11 +0.4 4,485,112 + HGI48_RS20070 0.11 +1.0 4,485,262 - HGI48_RS20070 0.17 -0.6
Or see this region's nucleotide sequence