Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19815 and HGI48_RS19820 are separated by 75 nucleotides HGI48_RS19820 and HGI48_RS19825 are separated by 3 nucleotides HGI48_RS19825 and HGI48_RS19830 overlap by 1 nucleotides
HGI48_RS19815: HGI48_RS19815 - glycerol-3-phosphate dehydrogenase, at 4,427,873 to 4,429,372
_RS19815
HGI48_RS19820: HGI48_RS19820 - DUF4276 family protein, at 4,429,448 to 4,429,714
_RS19820
HGI48_RS19825: HGI48_RS19825 - DUF4276 family protein, at 4,429,718 to 4,430,086
_RS19825
HGI48_RS19830: HGI48_RS19830 - AAA family ATPase, at 4,430,086 to 4,431,243
_RS19830
Position (kb) 4429
4430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4428.756 kb on + strand, within HGI48_RS19815 at 4428.758 kb on + strand, within HGI48_RS19815 at 4428.810 kb on - strand at 4428.987 kb on - strand at 4429.344 kb on - strand at 4429.374 kb on + strand at 4429.374 kb on + strand at 4429.375 kb on - strand at 4429.381 kb on + strand at 4429.412 kb on - strand at 4429.429 kb on - strand at 4429.429 kb on - strand at 4429.481 kb on - strand, within HGI48_RS19820 at 4429.511 kb on + strand, within HGI48_RS19820 at 4429.511 kb on + strand, within HGI48_RS19820 at 4429.555 kb on + strand, within HGI48_RS19820 at 4429.555 kb on + strand, within HGI48_RS19820 at 4429.557 kb on + strand, within HGI48_RS19820 at 4429.567 kb on + strand, within HGI48_RS19820 at 4429.568 kb on - strand, within HGI48_RS19820 at 4429.618 kb on + strand, within HGI48_RS19820 at 4429.619 kb on - strand, within HGI48_RS19820 at 4429.621 kb on + strand, within HGI48_RS19820 at 4429.695 kb on - strand at 4429.789 kb on + strand, within HGI48_RS19825 at 4429.796 kb on - strand, within HGI48_RS19825 at 4429.800 kb on - strand, within HGI48_RS19825 at 4429.800 kb on - strand, within HGI48_RS19825 at 4429.899 kb on + strand, within HGI48_RS19825 at 4429.910 kb on - strand, within HGI48_RS19825 at 4429.992 kb on - strand, within HGI48_RS19825 at 4430.075 kb on + strand at 4430.088 kb on - strand at 4430.254 kb on - strand, within HGI48_RS19830 at 4430.285 kb on + strand, within HGI48_RS19830 at 4430.341 kb on - strand, within HGI48_RS19830 at 4430.341 kb on - strand, within HGI48_RS19830 at 4430.371 kb on + strand, within HGI48_RS19830 at 4430.372 kb on - strand, within HGI48_RS19830 at 4430.377 kb on + strand, within HGI48_RS19830 at 4430.532 kb on + strand, within HGI48_RS19830 at 4430.535 kb on + strand, within HGI48_RS19830 at 4430.604 kb on + strand, within HGI48_RS19830 at 4430.634 kb on - strand, within HGI48_RS19830 at 4430.638 kb on + strand, within HGI48_RS19830 at 4430.679 kb on + strand, within HGI48_RS19830
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,428,756 + HGI48_RS19815 0.59 -0.4 4,428,758 + HGI48_RS19815 0.59 -1.3 4,428,810 - +2.0 4,428,987 - -0.0 4,429,344 - +0.9 4,429,374 + +1.0 4,429,374 + -1.2 4,429,375 - +0.1 4,429,381 + -2.6 4,429,412 - +0.4 4,429,429 - -0.4 4,429,429 - +1.3 4,429,481 - HGI48_RS19820 0.12 -0.0 4,429,511 + HGI48_RS19820 0.24 +0.1 4,429,511 + HGI48_RS19820 0.24 -1.3 4,429,555 + HGI48_RS19820 0.40 +0.1 4,429,555 + HGI48_RS19820 0.40 +1.3 4,429,557 + HGI48_RS19820 0.41 +1.7 4,429,567 + HGI48_RS19820 0.45 -0.4 4,429,568 - HGI48_RS19820 0.45 -0.3 4,429,618 + HGI48_RS19820 0.64 -0.2 4,429,619 - HGI48_RS19820 0.64 -1.0 4,429,621 + HGI48_RS19820 0.65 -2.0 4,429,695 - -0.0 4,429,789 + HGI48_RS19825 0.19 +0.4 4,429,796 - HGI48_RS19825 0.21 -0.4 4,429,800 - HGI48_RS19825 0.22 -0.2 4,429,800 - HGI48_RS19825 0.22 -0.6 4,429,899 + HGI48_RS19825 0.49 +0.4 4,429,910 - HGI48_RS19825 0.52 -0.0 4,429,992 - HGI48_RS19825 0.74 -1.6 4,430,075 + -1.8 4,430,088 - -1.0 4,430,254 - HGI48_RS19830 0.15 +0.2 4,430,285 + HGI48_RS19830 0.17 -0.6 4,430,341 - HGI48_RS19830 0.22 -0.4 4,430,341 - HGI48_RS19830 0.22 +0.0 4,430,371 + HGI48_RS19830 0.25 +0.8 4,430,372 - HGI48_RS19830 0.25 -0.2 4,430,377 + HGI48_RS19830 0.25 -2.0 4,430,532 + HGI48_RS19830 0.39 +0.6 4,430,535 + HGI48_RS19830 0.39 -0.3 4,430,604 + HGI48_RS19830 0.45 +0.4 4,430,634 - HGI48_RS19830 0.47 +1.0 4,430,638 + HGI48_RS19830 0.48 -0.6 4,430,679 + HGI48_RS19830 0.51 -2.2
Or see this region's nucleotide sequence