Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19690

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS19685 and HGI48_RS19690 are separated by 17 nucleotidesHGI48_RS19690 and HGI48_RS19695 overlap by 4 nucleotidesHGI48_RS19695 and HGI48_RS19700 overlap by 1 nucleotides HGI48_RS19685: HGI48_RS19685 - DNA uptake porin HofQ, at 4,394,931 to 4,396,235 _RS19685 HGI48_RS19690: HGI48_RS19690 - DUF2531 family protein, at 4,396,253 to 4,396,609 _RS19690 HGI48_RS19695: HGI48_RS19695 - hypothetical protein, at 4,396,606 to 4,397,157 _RS19695 HGI48_RS19700: HGI48_RS19700 - PilN domain-containing protein, at 4,397,157 to 4,397,717 _RS19700 Position (kb) 4396 4397Strain fitness (log2 ratio) -2 -1 0 1 2at 4395.336 kb on + strand, within HGI48_RS19685at 4395.392 kb on + strand, within HGI48_RS19685at 4395.605 kb on + strandat 4395.605 kb on + strand, within HGI48_RS19685at 4395.648 kb on + strandat 4395.648 kb on + strand, within HGI48_RS19685at 4395.648 kb on + strand, within HGI48_RS19685at 4395.648 kb on + strandat 4395.649 kb on - strand, within HGI48_RS19685at 4395.649 kb on - strand, within HGI48_RS19685at 4395.731 kb on + strand, within HGI48_RS19685at 4395.731 kb on + strand, within HGI48_RS19685at 4395.731 kb on + strand, within HGI48_RS19685at 4395.731 kb on + strand, within HGI48_RS19685at 4395.731 kb on + strand, within HGI48_RS19685at 4395.732 kb on - strand, within HGI48_RS19685at 4395.732 kb on - strand, within HGI48_RS19685at 4395.732 kb on - strand, within HGI48_RS19685at 4395.732 kb on - strand, within HGI48_RS19685at 4395.732 kb on - strand, within HGI48_RS19685at 4395.732 kb on - strand, within HGI48_RS19685at 4395.732 kb on - strand, within HGI48_RS19685at 4395.732 kb on - strand, within HGI48_RS19685at 4395.753 kb on + strandat 4395.754 kb on - strand, within HGI48_RS19685at 4395.774 kb on + strand, within HGI48_RS19685at 4395.775 kb on - strand, within HGI48_RS19685at 4395.805 kb on - strand, within HGI48_RS19685at 4395.807 kb on + strand, within HGI48_RS19685at 4395.807 kb on + strand, within HGI48_RS19685at 4395.807 kb on + strand, within HGI48_RS19685at 4395.807 kb on + strand, within HGI48_RS19685at 4395.807 kb on + strand, within HGI48_RS19685at 4395.808 kb on - strand, within HGI48_RS19685at 4395.808 kb on - strand, within HGI48_RS19685at 4395.808 kb on - strand, within HGI48_RS19685at 4395.808 kb on - strandat 4395.808 kb on - strand, within HGI48_RS19685at 4395.914 kb on + strand, within HGI48_RS19685at 4395.914 kb on + strandat 4395.914 kb on + strand, within HGI48_RS19685at 4395.915 kb on - strand, within HGI48_RS19685at 4395.915 kb on - strand, within HGI48_RS19685at 4395.915 kb on - strand, within HGI48_RS19685at 4395.916 kb on + strand, within HGI48_RS19685at 4395.916 kb on + strand, within HGI48_RS19685at 4395.916 kb on + strand, within HGI48_RS19685at 4395.916 kb on + strand, within HGI48_RS19685at 4395.916 kb on + strand, within HGI48_RS19685at 4395.916 kb on + strand, within HGI48_RS19685at 4395.917 kb on - strand, within HGI48_RS19685at 4395.917 kb on - strand, within HGI48_RS19685at 4395.917 kb on - strand, within HGI48_RS19685at 4395.917 kb on - strand, within HGI48_RS19685at 4395.917 kb on - strand, within HGI48_RS19685at 4395.917 kb on - strand, within HGI48_RS19685at 4395.917 kb on - strand, within HGI48_RS19685at 4395.929 kb on - strand, within HGI48_RS19685at 4395.983 kb on + strand, within HGI48_RS19685at 4395.983 kb on + strand, within HGI48_RS19685at 4395.983 kb on + strand, within HGI48_RS19685at 4395.983 kb on + strand, within HGI48_RS19685at 4395.984 kb on - strand, within HGI48_RS19685at 4395.984 kb on - strand, within HGI48_RS19685at 4395.986 kb on + strand, within HGI48_RS19685at 4395.986 kb on + strand, within HGI48_RS19685at 4395.987 kb on - strand, within HGI48_RS19685at 4396.064 kb on + strand, within HGI48_RS19685at 4396.065 kb on - strand, within HGI48_RS19685at 4396.065 kb on - strand, within HGI48_RS19685at 4396.385 kb on - strand, within HGI48_RS19690at 4396.490 kb on + strand, within HGI48_RS19690at 4396.686 kb on + strand, within HGI48_RS19695at 4396.686 kb on + strand, within HGI48_RS19695at 4396.686 kb on + strand, within HGI48_RS19695at 4396.686 kb on + strand, within HGI48_RS19695at 4396.686 kb on + strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.687 kb on - strand, within HGI48_RS19695at 4396.751 kb on + strand, within HGI48_RS19695at 4396.752 kb on - strand, within HGI48_RS19695at 4396.752 kb on - strand, within HGI48_RS19695at 4396.752 kb on - strand, within HGI48_RS19695at 4396.834 kb on + strand, within HGI48_RS19695at 4396.835 kb on - strand, within HGI48_RS19695at 4397.017 kb on + strand, within HGI48_RS19695at 4397.017 kb on + strand, within HGI48_RS19695at 4397.018 kb on - strand, within HGI48_RS19695at 4397.018 kb on - strand, within HGI48_RS19695at 4397.098 kb on + strand, within HGI48_RS19695at 4397.099 kb on - strand, within HGI48_RS19695at 4397.195 kb on - strandat 4397.195 kb on - strandat 4397.222 kb on + strandat 4397.222 kb on + strand, within HGI48_RS19700at 4397.222 kb on + strand, within HGI48_RS19700at 4397.222 kb on + strand, within HGI48_RS19700at 4397.254 kb on - strand, within HGI48_RS19700at 4397.268 kb on + strand, within HGI48_RS19700at 4397.268 kb on + strand, within HGI48_RS19700at 4397.268 kb on + strand, within HGI48_RS19700at 4397.268 kb on + strand, within HGI48_RS19700at 4397.277 kb on + strand, within HGI48_RS19700at 4397.593 kb on + strand, within HGI48_RS19700

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,395,336 + HGI48_RS19685 0.31 -0.1
4,395,392 + HGI48_RS19685 0.35 +0.4
4,395,605 + +2.6
4,395,605 + HGI48_RS19685 0.52 -0.9
4,395,648 + +1.7
4,395,648 + HGI48_RS19685 0.55 -1.6
4,395,648 + HGI48_RS19685 0.55 -0.3
4,395,648 + +1.4
4,395,649 - HGI48_RS19685 0.55 +0.6
4,395,649 - HGI48_RS19685 0.55 -0.4
4,395,731 + HGI48_RS19685 0.61 -0.5
4,395,731 + HGI48_RS19685 0.61 -0.0
4,395,731 + HGI48_RS19685 0.61 -0.4
4,395,731 + HGI48_RS19685 0.61 -1.0
4,395,731 + HGI48_RS19685 0.61 -0.6
4,395,732 - HGI48_RS19685 0.61 -0.1
4,395,732 - HGI48_RS19685 0.61 -0.4
4,395,732 - HGI48_RS19685 0.61 -1.8
4,395,732 - HGI48_RS19685 0.61 +0.6
4,395,732 - HGI48_RS19685 0.61 -0.7
4,395,732 - HGI48_RS19685 0.61 -2.3
4,395,732 - HGI48_RS19685 0.61 -0.2
4,395,732 - HGI48_RS19685 0.61 +1.2
4,395,753 + +1.0
4,395,754 - HGI48_RS19685 0.63 -0.8
4,395,774 + HGI48_RS19685 0.65 -0.2
4,395,775 - HGI48_RS19685 0.65 +0.5
4,395,805 - HGI48_RS19685 0.67 -0.8
4,395,807 + HGI48_RS19685 0.67 +1.3
4,395,807 + HGI48_RS19685 0.67 -1.1
4,395,807 + HGI48_RS19685 0.67 -0.1
4,395,807 + HGI48_RS19685 0.67 +1.8
4,395,807 + HGI48_RS19685 0.67 -0.3
4,395,808 - HGI48_RS19685 0.67 -1.7
4,395,808 - HGI48_RS19685 0.67 -0.7
4,395,808 - HGI48_RS19685 0.67 -0.0
4,395,808 - +2.4
4,395,808 - HGI48_RS19685 0.67 +0.2
4,395,914 + HGI48_RS19685 0.75 -1.3
4,395,914 + +0.4
4,395,914 + HGI48_RS19685 0.75 -0.8
4,395,915 - HGI48_RS19685 0.75 -2.6
4,395,915 - HGI48_RS19685 0.75 +1.0
4,395,915 - HGI48_RS19685 0.75 -1.0
4,395,916 + HGI48_RS19685 0.75 -1.6
4,395,916 + HGI48_RS19685 0.75 -1.0
4,395,916 + HGI48_RS19685 0.75 -0.6
4,395,916 + HGI48_RS19685 0.75 -1.6
4,395,916 + HGI48_RS19685 0.75 +0.7
4,395,916 + HGI48_RS19685 0.75 +1.2
4,395,917 - HGI48_RS19685 0.76 -0.6
4,395,917 - HGI48_RS19685 0.76 -0.8
4,395,917 - HGI48_RS19685 0.76 -0.4
4,395,917 - HGI48_RS19685 0.76 +1.5
4,395,917 - HGI48_RS19685 0.76 +0.8
4,395,917 - HGI48_RS19685 0.76 -0.0
4,395,917 - HGI48_RS19685 0.76 -0.9
4,395,929 - HGI48_RS19685 0.76 -2.2
4,395,983 + HGI48_RS19685 0.81 -1.8
4,395,983 + HGI48_RS19685 0.81 +0.2
4,395,983 + HGI48_RS19685 0.81 -0.3
4,395,983 + HGI48_RS19685 0.81 -0.8
4,395,984 - HGI48_RS19685 0.81 +0.2
4,395,984 - HGI48_RS19685 0.81 -0.2
4,395,986 + HGI48_RS19685 0.81 +1.0
4,395,986 + HGI48_RS19685 0.81 -0.0
4,395,987 - HGI48_RS19685 0.81 -1.6
4,396,064 + HGI48_RS19685 0.87 +1.0
4,396,065 - HGI48_RS19685 0.87 +1.6
4,396,065 - HGI48_RS19685 0.87 +0.1
4,396,385 - HGI48_RS19690 0.37 -0.0
4,396,490 + HGI48_RS19690 0.66 -1.0
4,396,686 + HGI48_RS19695 0.14 -0.4
4,396,686 + HGI48_RS19695 0.14 -0.0
4,396,686 + HGI48_RS19695 0.14 -1.6
4,396,686 + HGI48_RS19695 0.14 +0.6
4,396,686 + HGI48_RS19695 0.14 +0.3
4,396,687 - HGI48_RS19695 0.15 -1.0
4,396,687 - HGI48_RS19695 0.15 -1.3
4,396,687 - HGI48_RS19695 0.15 -0.4
4,396,687 - HGI48_RS19695 0.15 -0.0
4,396,687 - HGI48_RS19695 0.15 -0.0
4,396,687 - HGI48_RS19695 0.15 -1.3
4,396,751 + HGI48_RS19695 0.26 -1.3
4,396,752 - HGI48_RS19695 0.26 +0.6
4,396,752 - HGI48_RS19695 0.26 +0.7
4,396,752 - HGI48_RS19695 0.26 -0.7
4,396,834 + HGI48_RS19695 0.41 -0.0
4,396,835 - HGI48_RS19695 0.41 -0.6
4,397,017 + HGI48_RS19695 0.74 +0.3
4,397,017 + HGI48_RS19695 0.74 -0.4
4,397,018 - HGI48_RS19695 0.75 -1.3
4,397,018 - HGI48_RS19695 0.75 -2.5
4,397,098 + HGI48_RS19695 0.89 +0.2
4,397,099 - HGI48_RS19695 0.89 +0.4
4,397,195 - -1.0
4,397,195 - -1.8
4,397,222 + +0.4
4,397,222 + HGI48_RS19700 0.12 -1.1
4,397,222 + HGI48_RS19700 0.12 -1.3
4,397,222 + HGI48_RS19700 0.12 +0.3
4,397,254 - HGI48_RS19700 0.17 -1.0
4,397,268 + HGI48_RS19700 0.20 -0.0
4,397,268 + HGI48_RS19700 0.20 +0.7
4,397,268 + HGI48_RS19700 0.20 -0.9
4,397,268 + HGI48_RS19700 0.20 -0.6
4,397,277 + HGI48_RS19700 0.21 +0.5
4,397,593 + HGI48_RS19700 0.78 -2.5

Or see this region's nucleotide sequence