Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19655 and HGI48_RS19660 overlap by 8 nucleotides HGI48_RS19660 and HGI48_RS19665 are separated by 135 nucleotides HGI48_RS19665 and HGI48_RS19670 are separated by 76 nucleotides
HGI48_RS19655: HGI48_RS19655 - phosphoglycolate phosphatase, at 4,389,193 to 4,389,891
_RS19655
HGI48_RS19660: HGI48_RS19660 - ribulose-phosphate 3-epimerase, at 4,389,884 to 4,390,561
_RS19660
HGI48_RS19665: HGI48_RS19665 - adenine-specific DNA-methyltransferase, at 4,390,697 to 4,391,524
_RS19665
HGI48_RS19670: HGI48_RS19670 - SPOR domain-containing protein, at 4,391,601 to 4,392,653
_RS19670
Position (kb)
4390
4391
4392 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4389.897 kb on - strand at 4390.612 kb on + strand at 4390.612 kb on + strand at 4390.654 kb on + strand at 4390.655 kb on - strand at 4391.538 kb on - strand at 4391.538 kb on - strand at 4391.565 kb on + strand at 4391.566 kb on - strand at 4391.566 kb on - strand at 4391.573 kb on + strand at 4391.603 kb on - strand at 4391.603 kb on - strand at 4391.603 kb on - strand at 4391.603 kb on - strand at 4391.603 kb on - strand at 4391.685 kb on - strand at 4391.685 kb on - strand at 4391.735 kb on - strand, within HGI48_RS19670 at 4391.735 kb on - strand, within HGI48_RS19670 at 4391.735 kb on - strand, within HGI48_RS19670 at 4391.735 kb on - strand, within HGI48_RS19670 at 4391.765 kb on - strand, within HGI48_RS19670 at 4391.765 kb on - strand at 4391.765 kb on - strand at 4391.765 kb on - strand, within HGI48_RS19670 at 4391.801 kb on - strand at 4391.801 kb on - strand, within HGI48_RS19670 at 4391.801 kb on - strand at 4391.832 kb on - strand, within HGI48_RS19670 at 4391.847 kb on - strand, within HGI48_RS19670 at 4391.961 kb on - strand at 4391.976 kb on - strand, within HGI48_RS19670 at 4392.393 kb on - strand, within HGI48_RS19670 at 4392.393 kb on - strand, within HGI48_RS19670 at 4392.453 kb on - strand, within HGI48_RS19670
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,389,897 - -0.9 4,390,612 + -1.2 4,390,612 + -0.4 4,390,654 + -1.4 4,390,655 - +0.2 4,391,538 - +0.8 4,391,538 - -1.0 4,391,565 + -1.8 4,391,566 - -0.0 4,391,566 - +0.4 4,391,573 + +1.6 4,391,603 - -1.2 4,391,603 - -0.7 4,391,603 - -0.0 4,391,603 - -1.0 4,391,603 - -1.0 4,391,685 - -1.6 4,391,685 - -0.6 4,391,735 - HGI48_RS19670 0.13 -1.8 4,391,735 - HGI48_RS19670 0.13 -0.7 4,391,735 - HGI48_RS19670 0.13 +0.3 4,391,735 - HGI48_RS19670 0.13 -0.1 4,391,765 - HGI48_RS19670 0.16 -0.1 4,391,765 - -0.6 4,391,765 - -0.6 4,391,765 - HGI48_RS19670 0.16 -1.0 4,391,801 - -0.6 4,391,801 - HGI48_RS19670 0.19 +2.3 4,391,801 - +1.0 4,391,832 - HGI48_RS19670 0.22 -0.6 4,391,847 - HGI48_RS19670 0.23 +1.3 4,391,961 - +2.0 4,391,976 - HGI48_RS19670 0.36 -1.6 4,392,393 - HGI48_RS19670 0.75 -0.0 4,392,393 - HGI48_RS19670 0.75 +0.3 4,392,453 - HGI48_RS19670 0.81 -0.0
Or see this region's nucleotide sequence