Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19565 and HGI48_RS19570 are separated by 88 nucleotides HGI48_RS19570 and HGI48_RS19575 are separated by 120 nucleotides HGI48_RS19575 and HGI48_RS19580 are separated by 233 nucleotides
HGI48_RS19565: HGI48_RS19565 - cAMP-activated global transcriptional regulator CRP, at 4,367,409 to 4,368,041
_RS19565
HGI48_RS19570: HGI48_RS19570 - aspartate aminotransferase family protein, at 4,368,130 to 4,369,353
_RS19570
HGI48_RS19575: HGI48_RS19575 - aminodeoxychorismate synthase component II, at 4,369,474 to 4,370,049
_RS19575
HGI48_RS19580: HGI48_RS19580 - helix-turn-helix domain-containing protein, at 4,370,283 to 4,371,488
_RS19580
Position (kb) 4368
4369
4370 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4367.141 kb on + strand at 4367.155 kb on + strand at 4367.216 kb on + strand at 4367.278 kb on - strand at 4367.292 kb on + strand at 4367.292 kb on + strand at 4367.331 kb on + strand at 4367.335 kb on + strand at 4367.335 kb on + strand at 4367.335 kb on + strand at 4368.043 kb on + strand at 4368.043 kb on + strand at 4368.044 kb on - strand at 4368.108 kb on + strand at 4368.142 kb on + strand at 4368.143 kb on - strand at 4368.143 kb on - strand at 4368.145 kb on + strand at 4368.363 kb on + strand, within HGI48_RS19570 at 4368.364 kb on - strand, within HGI48_RS19570 at 4368.444 kb on + strand, within HGI48_RS19570 at 4368.500 kb on + strand, within HGI48_RS19570 at 4368.591 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.818 kb on - strand, within HGI48_RS19570 at 4368.965 kb on + strand at 4368.965 kb on + strand, within HGI48_RS19570 at 4368.965 kb on + strand, within HGI48_RS19570 at 4369.072 kb on - strand, within HGI48_RS19570 at 4369.110 kb on + strand, within HGI48_RS19570 at 4369.111 kb on - strand, within HGI48_RS19570 at 4369.111 kb on - strand, within HGI48_RS19570 at 4369.111 kb on - strand, within HGI48_RS19570 at 4369.223 kb on + strand, within HGI48_RS19570 at 4369.223 kb on + strand at 4369.223 kb on + strand, within HGI48_RS19570 at 4369.223 kb on + strand, within HGI48_RS19570 at 4369.224 kb on - strand, within HGI48_RS19570 at 4369.224 kb on - strand at 4369.224 kb on - strand, within HGI48_RS19570 at 4369.306 kb on + strand at 4369.316 kb on + strand at 4369.316 kb on + strand at 4369.321 kb on - strand at 4369.321 kb on - strand at 4369.371 kb on + strand at 4369.408 kb on - strand at 4369.475 kb on + strand at 4369.499 kb on - strand at 4369.670 kb on + strand, within HGI48_RS19575 at 4369.887 kb on + strand, within HGI48_RS19575 at 4370.012 kb on + strand at 4370.012 kb on + strand at 4370.012 kb on + strand at 4370.016 kb on + strand at 4370.016 kb on + strand at 4370.017 kb on - strand at 4370.017 kb on - strand at 4370.017 kb on - strand at 4370.027 kb on + strand at 4370.027 kb on + strand at 4370.027 kb on + strand at 4370.027 kb on + strand at 4370.027 kb on + strand at 4370.028 kb on - strand at 4370.028 kb on - strand at 4370.028 kb on - strand at 4370.028 kb on - strand at 4370.038 kb on - strand at 4370.041 kb on + strand at 4370.041 kb on + strand at 4370.041 kb on + strand at 4370.042 kb on - strand at 4370.049 kb on + strand at 4370.049 kb on + strand at 4370.049 kb on + strand at 4370.049 kb on + strand at 4370.049 kb on + strand at 4370.050 kb on - strand at 4370.050 kb on - strand at 4370.050 kb on - strand at 4370.050 kb on - strand at 4370.050 kb on - strand at 4370.059 kb on + strand at 4370.059 kb on + strand at 4370.059 kb on + strand at 4370.059 kb on + strand at 4370.060 kb on - strand at 4370.060 kb on - strand at 4370.060 kb on - strand at 4370.060 kb on - strand at 4370.060 kb on - strand at 4370.099 kb on + strand at 4370.099 kb on + strand at 4370.099 kb on + strand at 4370.100 kb on - strand at 4370.100 kb on - strand at 4370.103 kb on + strand at 4370.103 kb on + strand at 4370.103 kb on + strand at 4370.103 kb on + strand at 4370.104 kb on - strand at 4370.195 kb on + strand at 4370.195 kb on + strand at 4370.195 kb on + strand at 4370.196 kb on - strand at 4370.196 kb on - strand at 4370.196 kb on - strand at 4370.196 kb on - strand at 4370.196 kb on - strand at 4370.208 kb on + strand at 4370.352 kb on - strand at 4370.353 kb on + strand at 4370.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,367,141 + -0.0 4,367,155 + -0.0 4,367,216 + -1.0 4,367,278 - -0.8 4,367,292 + -2.3 4,367,292 + -1.3 4,367,331 + +1.3 4,367,335 + +0.1 4,367,335 + -0.6 4,367,335 + +0.4 4,368,043 + -0.7 4,368,043 + -0.3 4,368,044 - -0.3 4,368,108 + -0.3 4,368,142 + +1.0 4,368,143 - +1.5 4,368,143 - -0.0 4,368,145 + +1.0 4,368,363 + HGI48_RS19570 0.19 -1.6 4,368,364 - HGI48_RS19570 0.19 -1.2 4,368,444 + HGI48_RS19570 0.26 -0.9 4,368,500 + HGI48_RS19570 0.30 -1.0 4,368,591 + HGI48_RS19570 0.38 -0.3 4,368,630 + HGI48_RS19570 0.41 +1.5 4,368,630 + HGI48_RS19570 0.41 -0.0 4,368,630 + HGI48_RS19570 0.41 +0.7 4,368,630 + HGI48_RS19570 0.41 -0.6 4,368,630 + HGI48_RS19570 0.41 -0.4 4,368,630 + HGI48_RS19570 0.41 -2.0 4,368,630 + HGI48_RS19570 0.41 -2.0 4,368,630 + HGI48_RS19570 0.41 -0.9 4,368,630 + HGI48_RS19570 0.41 +0.4 4,368,631 - HGI48_RS19570 0.41 +0.2 4,368,631 - HGI48_RS19570 0.41 +0.7 4,368,631 - HGI48_RS19570 0.41 -1.0 4,368,631 - HGI48_RS19570 0.41 -0.1 4,368,631 - HGI48_RS19570 0.41 -1.1 4,368,631 - HGI48_RS19570 0.41 -0.4 4,368,632 + HGI48_RS19570 0.41 -0.8 4,368,632 + HGI48_RS19570 0.41 -0.4 4,368,632 + HGI48_RS19570 0.41 +0.1 4,368,632 + HGI48_RS19570 0.41 -0.8 4,368,632 + HGI48_RS19570 0.41 -0.0 4,368,632 + HGI48_RS19570 0.41 +1.1 4,368,632 + HGI48_RS19570 0.41 +0.4 4,368,632 + HGI48_RS19570 0.41 +0.7 4,368,632 + HGI48_RS19570 0.41 +0.2 4,368,632 + HGI48_RS19570 0.41 -0.0 4,368,632 + HGI48_RS19570 0.41 +0.2 4,368,633 - HGI48_RS19570 0.41 -1.3 4,368,633 - HGI48_RS19570 0.41 +0.2 4,368,633 - HGI48_RS19570 0.41 +0.2 4,368,633 - HGI48_RS19570 0.41 +1.3 4,368,633 - HGI48_RS19570 0.41 -1.8 4,368,633 - HGI48_RS19570 0.41 -0.2 4,368,818 - HGI48_RS19570 0.56 -0.0 4,368,965 + +3.3 4,368,965 + HGI48_RS19570 0.68 +1.0 4,368,965 + HGI48_RS19570 0.68 -1.3 4,369,072 - HGI48_RS19570 0.77 +0.2 4,369,110 + HGI48_RS19570 0.80 -0.2 4,369,111 - HGI48_RS19570 0.80 +1.2 4,369,111 - HGI48_RS19570 0.80 +1.6 4,369,111 - HGI48_RS19570 0.80 -0.6 4,369,223 + HGI48_RS19570 0.89 -0.8 4,369,223 + +1.7 4,369,223 + HGI48_RS19570 0.89 -0.6 4,369,223 + HGI48_RS19570 0.89 +1.6 4,369,224 - HGI48_RS19570 0.89 -2.0 4,369,224 - +0.4 4,369,224 - HGI48_RS19570 0.89 +1.2 4,369,306 + -2.9 4,369,316 + +0.0 4,369,316 + +0.3 4,369,321 - -2.2 4,369,321 - -0.0 4,369,371 + -0.5 4,369,408 - -1.0 4,369,475 + -0.8 4,369,499 - -0.0 4,369,670 + HGI48_RS19575 0.34 -1.0 4,369,887 + HGI48_RS19575 0.72 +0.3 4,370,012 + -0.0 4,370,012 + -0.3 4,370,012 + -0.6 4,370,016 + +1.3 4,370,016 + -1.0 4,370,017 - -0.8 4,370,017 - -0.0 4,370,017 - +2.0 4,370,027 + -0.8 4,370,027 + +0.7 4,370,027 + -0.3 4,370,027 + +0.5 4,370,027 + -0.8 4,370,028 - +1.0 4,370,028 - -0.4 4,370,028 - -1.8 4,370,028 - -1.0 4,370,038 - +1.0 4,370,041 + -0.2 4,370,041 + +0.3 4,370,041 + +1.0 4,370,042 - -0.6 4,370,049 + +0.2 4,370,049 + +1.1 4,370,049 + -0.3 4,370,049 + -0.8 4,370,049 + +0.7 4,370,050 - -0.0 4,370,050 - +1.0 4,370,050 - +0.8 4,370,050 - -1.0 4,370,050 - -1.2 4,370,059 + -0.6 4,370,059 + -2.3 4,370,059 + +0.4 4,370,059 + -0.2 4,370,060 - -1.0 4,370,060 - -1.8 4,370,060 - +0.4 4,370,060 - +0.3 4,370,060 - +0.2 4,370,099 + -0.0 4,370,099 + -0.3 4,370,099 + -1.6 4,370,100 - -1.8 4,370,100 - -0.6 4,370,103 + -0.3 4,370,103 + +0.7 4,370,103 + +0.4 4,370,103 + -0.2 4,370,104 - +2.6 4,370,195 + +1.5 4,370,195 + -0.5 4,370,195 + -1.0 4,370,196 - -0.1 4,370,196 - -0.2 4,370,196 - -0.0 4,370,196 - +0.7 4,370,196 - -1.0 4,370,208 + +0.2 4,370,352 - -0.0 4,370,353 + +1.6 4,370,353 + -0.8
Or see this region's nucleotide sequence