Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19055 and HGI48_RS19060 are separated by 470 nucleotides HGI48_RS19060 and HGI48_RS19065 overlap by 8 nucleotides HGI48_RS19065 and HGI48_RS19070 are separated by 12 nucleotides
HGI48_RS19055: HGI48_RS19055 - elongation factor P--(R)-beta-lysine ligase, at 4,277,434 to 4,278,411
_RS19055
HGI48_RS19060: HGI48_RS19060 - fumarate reductase (quinol) flavoprotein subunit, at 4,278,882 to 4,280,678
_RS19060
HGI48_RS19065: HGI48_RS19065 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 4,280,671 to 4,281,405
_RS19065
HGI48_RS19070: HGI48_RS19070 - fumarate reductase subunit FrdC, at 4,281,418 to 4,281,813
_RS19070
Position (kb) 4278
4279
4280
4281 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4278.039 kb on - strand, within HGI48_RS19055 at 4278.048 kb on - strand, within HGI48_RS19055 at 4278.135 kb on - strand, within HGI48_RS19055 at 4278.447 kb on + strand at 4278.498 kb on - strand at 4278.513 kb on - strand at 4278.513 kb on - strand at 4278.518 kb on + strand at 4278.528 kb on + strand at 4278.529 kb on - strand at 4278.538 kb on - strand at 4278.538 kb on - strand at 4278.543 kb on - strand at 4278.543 kb on - strand at 4278.543 kb on - strand at 4278.543 kb on - strand at 4278.589 kb on + strand at 4278.639 kb on - strand at 4278.639 kb on - strand at 4278.652 kb on + strand at 4278.757 kb on + strand at 4278.783 kb on + strand at 4278.857 kb on + strand at 4278.862 kb on + strand at 4278.866 kb on + strand at 4278.867 kb on - strand at 4278.867 kb on - strand at 4278.904 kb on + strand at 4278.904 kb on + strand at 4278.904 kb on + strand at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.129 kb on + strand, within HGI48_RS19060 at 4279.129 kb on + strand, within HGI48_RS19060 at 4279.129 kb on + strand, within HGI48_RS19060 at 4279.130 kb on - strand, within HGI48_RS19060 at 4279.130 kb on - strand, within HGI48_RS19060 at 4279.130 kb on - strand, within HGI48_RS19060 at 4279.361 kb on + strand, within HGI48_RS19060 at 4279.362 kb on - strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.407 kb on - strand, within HGI48_RS19060 at 4279.407 kb on - strand at 4279.407 kb on - strand, within HGI48_RS19060 at 4279.407 kb on - strand at 4279.407 kb on - strand, within HGI48_RS19060 at 4279.486 kb on - strand, within HGI48_RS19060 at 4279.725 kb on + strand, within HGI48_RS19060 at 4279.725 kb on + strand, within HGI48_RS19060 at 4279.725 kb on + strand, within HGI48_RS19060 at 4279.726 kb on - strand, within HGI48_RS19060 at 4279.726 kb on - strand, within HGI48_RS19060 at 4279.726 kb on - strand, within HGI48_RS19060 at 4279.726 kb on - strand, within HGI48_RS19060 at 4279.726 kb on - strand, within HGI48_RS19060 at 4279.726 kb on - strand, within HGI48_RS19060 at 4279.796 kb on - strand, within HGI48_RS19060 at 4279.796 kb on - strand at 4279.796 kb on - strand, within HGI48_RS19060 at 4279.796 kb on - strand, within HGI48_RS19060 at 4279.796 kb on - strand at 4279.796 kb on - strand, within HGI48_RS19060 at 4279.799 kb on + strand, within HGI48_RS19060 at 4279.800 kb on - strand, within HGI48_RS19060 at 4279.800 kb on - strand, within HGI48_RS19060 at 4279.821 kb on + strand, within HGI48_RS19060 at 4279.821 kb on + strand, within HGI48_RS19060 at 4279.822 kb on - strand, within HGI48_RS19060 at 4279.855 kb on + strand at 4279.855 kb on + strand, within HGI48_RS19060 at 4279.856 kb on - strand, within HGI48_RS19060 at 4279.896 kb on + strand, within HGI48_RS19060 at 4279.896 kb on + strand, within HGI48_RS19060 at 4279.897 kb on - strand, within HGI48_RS19060 at 4279.897 kb on - strand, within HGI48_RS19060 at 4279.897 kb on - strand, within HGI48_RS19060 at 4279.897 kb on - strand, within HGI48_RS19060 at 4279.897 kb on - strand, within HGI48_RS19060 at 4279.950 kb on + strand, within HGI48_RS19060 at 4279.950 kb on + strand, within HGI48_RS19060 at 4279.951 kb on - strand, within HGI48_RS19060 at 4279.951 kb on - strand, within HGI48_RS19060 at 4279.951 kb on - strand, within HGI48_RS19060 at 4279.951 kb on - strand, within HGI48_RS19060 at 4279.951 kb on - strand, within HGI48_RS19060 at 4279.955 kb on + strand, within HGI48_RS19060 at 4280.281 kb on - strand, within HGI48_RS19060 at 4280.374 kb on + strand, within HGI48_RS19060 at 4280.394 kb on + strand, within HGI48_RS19060 at 4280.395 kb on - strand, within HGI48_RS19060 at 4280.435 kb on + strand, within HGI48_RS19060 at 4280.435 kb on + strand, within HGI48_RS19060 at 4280.435 kb on + strand, within HGI48_RS19060 at 4280.435 kb on + strand, within HGI48_RS19060 at 4280.435 kb on + strand, within HGI48_RS19060 at 4280.435 kb on + strand, within HGI48_RS19060 at 4280.548 kb on - strand at 4280.548 kb on - strand at 4280.548 kb on - strand at 4280.679 kb on + strand at 4280.679 kb on + strand at 4280.679 kb on + strand at 4280.710 kb on + strand at 4280.710 kb on + strand at 4280.710 kb on + strand at 4280.711 kb on - strand at 4280.749 kb on + strand, within HGI48_RS19065 at 4280.749 kb on + strand, within HGI48_RS19065 at 4280.750 kb on - strand, within HGI48_RS19065 at 4280.750 kb on - strand, within HGI48_RS19065 at 4280.750 kb on - strand, within HGI48_RS19065 at 4280.750 kb on - strand, within HGI48_RS19065 at 4280.750 kb on - strand, within HGI48_RS19065 at 4280.750 kb on - strand, within HGI48_RS19065 at 4280.762 kb on - strand, within HGI48_RS19065 at 4280.762 kb on - strand, within HGI48_RS19065 at 4280.762 kb on - strand, within HGI48_RS19065 at 4280.797 kb on + strand, within HGI48_RS19065 at 4280.797 kb on + strand, within HGI48_RS19065 at 4280.798 kb on - strand, within HGI48_RS19065 at 4280.798 kb on - strand at 4280.923 kb on + strand, within HGI48_RS19065 at 4280.923 kb on + strand, within HGI48_RS19065 at 4280.923 kb on + strand, within HGI48_RS19065 at 4280.924 kb on - strand, within HGI48_RS19065 at 4280.925 kb on + strand, within HGI48_RS19065 at 4280.926 kb on - strand, within HGI48_RS19065 at 4281.028 kb on + strand, within HGI48_RS19065 at 4281.028 kb on + strand, within HGI48_RS19065 at 4281.029 kb on - strand, within HGI48_RS19065 at 4281.029 kb on - strand, within HGI48_RS19065 at 4281.049 kb on - strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.097 kb on + strand, within HGI48_RS19065 at 4281.098 kb on - strand, within HGI48_RS19065 at 4281.209 kb on - strand, within HGI48_RS19065 at 4281.285 kb on + strand, within HGI48_RS19065 at 4281.286 kb on - strand, within HGI48_RS19065 at 4281.355 kb on - strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.392 kb on + strand at 4281.393 kb on - strand at 4281.393 kb on - strand at 4281.393 kb on - strand at 4281.404 kb on - strand at 4281.432 kb on + strand at 4281.433 kb on - strand at 4281.433 kb on - strand at 4281.433 kb on - strand at 4281.439 kb on + strand at 4281.439 kb on + strand at 4281.439 kb on + strand at 4281.439 kb on + strand at 4281.440 kb on - strand at 4281.440 kb on - strand at 4281.440 kb on - strand at 4281.440 kb on - strand at 4281.440 kb on - strand at 4281.493 kb on + strand, within HGI48_RS19070 at 4281.493 kb on + strand, within HGI48_RS19070 at 4281.493 kb on + strand, within HGI48_RS19070 at 4281.493 kb on + strand, within HGI48_RS19070 at 4281.494 kb on - strand, within HGI48_RS19070 at 4281.495 kb on + strand, within HGI48_RS19070 at 4281.495 kb on + strand, within HGI48_RS19070 at 4281.495 kb on + strand, within HGI48_RS19070 at 4281.623 kb on + strand, within HGI48_RS19070 at 4281.636 kb on + strand, within HGI48_RS19070 at 4281.637 kb on - strand, within HGI48_RS19070 at 4281.637 kb on - strand, within HGI48_RS19070
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,278,039 - HGI48_RS19055 0.62 -0.6 4,278,048 - HGI48_RS19055 0.63 -1.3 4,278,135 - HGI48_RS19055 0.72 -0.6 4,278,447 + -1.0 4,278,498 - -0.8 4,278,513 - +0.6 4,278,513 - +0.2 4,278,518 + -0.0 4,278,528 + -0.0 4,278,529 - +0.9 4,278,538 - -0.6 4,278,538 - -1.1 4,278,543 - +0.2 4,278,543 - -0.8 4,278,543 - -0.2 4,278,543 - -1.6 4,278,589 + +0.1 4,278,639 - +0.7 4,278,639 - -0.0 4,278,652 + -0.7 4,278,757 + +0.6 4,278,783 + +1.4 4,278,857 + +0.1 4,278,862 + -0.5 4,278,866 + -1.0 4,278,867 - -0.1 4,278,867 - +0.7 4,278,904 + -1.1 4,278,904 + +0.4 4,278,904 + +0.2 4,279,126 + HGI48_RS19060 0.14 +1.4 4,279,126 + HGI48_RS19060 0.14 -0.5 4,279,126 + HGI48_RS19060 0.14 -2.2 4,279,126 + HGI48_RS19060 0.14 -0.1 4,279,126 + HGI48_RS19060 0.14 -0.4 4,279,126 + -0.6 4,279,126 + HGI48_RS19060 0.14 -1.0 4,279,126 + +2.2 4,279,126 + HGI48_RS19060 0.14 -1.6 4,279,126 + HGI48_RS19060 0.14 -0.6 4,279,126 + HGI48_RS19060 0.14 -0.0 4,279,126 + HGI48_RS19060 0.14 -1.9 4,279,127 - HGI48_RS19060 0.14 -1.0 4,279,127 - HGI48_RS19060 0.14 -0.8 4,279,127 - HGI48_RS19060 0.14 -0.3 4,279,127 - HGI48_RS19060 0.14 +1.0 4,279,127 - HGI48_RS19060 0.14 -0.4 4,279,127 - HGI48_RS19060 0.14 -0.3 4,279,127 - HGI48_RS19060 0.14 -0.2 4,279,127 - HGI48_RS19060 0.14 -0.1 4,279,127 - HGI48_RS19060 0.14 -0.2 4,279,127 - HGI48_RS19060 0.14 -0.8 4,279,127 - HGI48_RS19060 0.14 +2.1 4,279,127 - HGI48_RS19060 0.14 -0.7 4,279,129 + HGI48_RS19060 0.14 +0.8 4,279,129 + HGI48_RS19060 0.14 +0.2 4,279,129 + HGI48_RS19060 0.14 -0.6 4,279,130 - HGI48_RS19060 0.14 -1.3 4,279,130 - HGI48_RS19060 0.14 -1.1 4,279,130 - HGI48_RS19060 0.14 -1.8 4,279,361 + HGI48_RS19060 0.27 +0.7 4,279,362 - HGI48_RS19060 0.27 +0.4 4,279,406 + HGI48_RS19060 0.29 -1.2 4,279,406 + HGI48_RS19060 0.29 +1.0 4,279,406 + HGI48_RS19060 0.29 -1.0 4,279,406 + HGI48_RS19060 0.29 -0.6 4,279,406 + HGI48_RS19060 0.29 -0.4 4,279,407 - HGI48_RS19060 0.29 -1.3 4,279,407 - +2.0 4,279,407 - HGI48_RS19060 0.29 -1.3 4,279,407 - +1.7 4,279,407 - HGI48_RS19060 0.29 +1.5 4,279,486 - HGI48_RS19060 0.34 +0.7 4,279,725 + HGI48_RS19060 0.47 -1.3 4,279,725 + HGI48_RS19060 0.47 -0.3 4,279,725 + HGI48_RS19060 0.47 +1.1 4,279,726 - HGI48_RS19060 0.47 -0.2 4,279,726 - HGI48_RS19060 0.47 -0.4 4,279,726 - HGI48_RS19060 0.47 -1.4 4,279,726 - HGI48_RS19060 0.47 -1.3 4,279,726 - HGI48_RS19060 0.47 -0.2 4,279,726 - HGI48_RS19060 0.47 -0.2 4,279,796 - HGI48_RS19060 0.51 -0.6 4,279,796 - +2.3 4,279,796 - HGI48_RS19060 0.51 +0.1 4,279,796 - HGI48_RS19060 0.51 +0.2 4,279,796 - +1.0 4,279,796 - HGI48_RS19060 0.51 +0.6 4,279,799 + HGI48_RS19060 0.51 -1.8 4,279,800 - HGI48_RS19060 0.51 +1.2 4,279,800 - HGI48_RS19060 0.51 -1.3 4,279,821 + HGI48_RS19060 0.52 +1.8 4,279,821 + HGI48_RS19060 0.52 +0.4 4,279,822 - HGI48_RS19060 0.52 +1.2 4,279,855 + +1.6 4,279,855 + HGI48_RS19060 0.54 -0.0 4,279,856 - HGI48_RS19060 0.54 -1.6 4,279,896 + HGI48_RS19060 0.56 -0.9 4,279,896 + HGI48_RS19060 0.56 -0.3 4,279,897 - HGI48_RS19060 0.56 +0.4 4,279,897 - HGI48_RS19060 0.56 -0.3 4,279,897 - HGI48_RS19060 0.56 -0.6 4,279,897 - HGI48_RS19060 0.56 +0.4 4,279,897 - HGI48_RS19060 0.56 -0.0 4,279,950 + HGI48_RS19060 0.59 -1.0 4,279,950 + HGI48_RS19060 0.59 -0.3 4,279,951 - HGI48_RS19060 0.59 -0.5 4,279,951 - HGI48_RS19060 0.59 +0.4 4,279,951 - HGI48_RS19060 0.59 +0.2 4,279,951 - HGI48_RS19060 0.59 -0.4 4,279,951 - HGI48_RS19060 0.59 +0.5 4,279,955 + HGI48_RS19060 0.60 -0.4 4,280,281 - HGI48_RS19060 0.78 -0.6 4,280,374 + HGI48_RS19060 0.83 +0.3 4,280,394 + HGI48_RS19060 0.84 -0.3 4,280,395 - HGI48_RS19060 0.84 -0.0 4,280,435 + HGI48_RS19060 0.86 +0.4 4,280,435 + HGI48_RS19060 0.86 +0.2 4,280,435 + HGI48_RS19060 0.86 -1.0 4,280,435 + HGI48_RS19060 0.86 +0.7 4,280,435 + HGI48_RS19060 0.86 -0.3 4,280,435 + HGI48_RS19060 0.86 -0.3 4,280,548 - -0.3 4,280,548 - +0.2 4,280,548 - -0.2 4,280,679 + -1.7 4,280,679 + -2.0 4,280,679 + -1.0 4,280,710 + +0.4 4,280,710 + +0.2 4,280,710 + +0.6 4,280,711 - -1.8 4,280,749 + HGI48_RS19065 0.11 -1.0 4,280,749 + HGI48_RS19065 0.11 -0.6 4,280,750 - HGI48_RS19065 0.11 +0.4 4,280,750 - HGI48_RS19065 0.11 -0.1 4,280,750 - HGI48_RS19065 0.11 +0.4 4,280,750 - HGI48_RS19065 0.11 +0.4 4,280,750 - HGI48_RS19065 0.11 +0.3 4,280,750 - HGI48_RS19065 0.11 -1.0 4,280,762 - HGI48_RS19065 0.12 -0.5 4,280,762 - HGI48_RS19065 0.12 +0.5 4,280,762 - HGI48_RS19065 0.12 +0.6 4,280,797 + HGI48_RS19065 0.17 -0.8 4,280,797 + HGI48_RS19065 0.17 +0.3 4,280,798 - HGI48_RS19065 0.17 -1.2 4,280,798 - +0.4 4,280,923 + HGI48_RS19065 0.34 -0.6 4,280,923 + HGI48_RS19065 0.34 +0.2 4,280,923 + HGI48_RS19065 0.34 -1.6 4,280,924 - HGI48_RS19065 0.34 -0.8 4,280,925 + HGI48_RS19065 0.35 -0.2 4,280,926 - HGI48_RS19065 0.35 +1.5 4,281,028 + HGI48_RS19065 0.49 -0.3 4,281,028 + HGI48_RS19065 0.49 +2.0 4,281,029 - HGI48_RS19065 0.49 -1.5 4,281,029 - HGI48_RS19065 0.49 -1.9 4,281,049 - HGI48_RS19065 0.51 +0.9 4,281,097 + HGI48_RS19065 0.58 -0.0 4,281,097 + HGI48_RS19065 0.58 -2.1 4,281,097 + HGI48_RS19065 0.58 -1.8 4,281,097 + HGI48_RS19065 0.58 +0.6 4,281,097 + HGI48_RS19065 0.58 -1.0 4,281,097 + HGI48_RS19065 0.58 -0.5 4,281,098 - HGI48_RS19065 0.58 -2.5 4,281,209 - HGI48_RS19065 0.73 -0.2 4,281,285 + HGI48_RS19065 0.84 -2.5 4,281,286 - HGI48_RS19065 0.84 +0.3 4,281,355 - +2.3 4,281,392 + +0.6 4,281,392 + -0.6 4,281,392 + -0.9 4,281,392 + -0.1 4,281,392 + -0.2 4,281,392 + +2.0 4,281,392 + -0.0 4,281,393 - -0.1 4,281,393 - -0.0 4,281,393 - -0.0 4,281,404 - -1.0 4,281,432 + -0.6 4,281,433 - +2.2 4,281,433 - +0.1 4,281,433 - -3.1 4,281,439 + +0.2 4,281,439 + +1.4 4,281,439 + +1.2 4,281,439 + +0.7 4,281,440 - -0.3 4,281,440 - +0.6 4,281,440 - -2.3 4,281,440 - +0.2 4,281,440 - -0.3 4,281,493 + HGI48_RS19070 0.19 -1.3 4,281,493 + HGI48_RS19070 0.19 +0.6 4,281,493 + HGI48_RS19070 0.19 -1.3 4,281,493 + HGI48_RS19070 0.19 -0.5 4,281,494 - HGI48_RS19070 0.19 +0.4 4,281,495 + HGI48_RS19070 0.19 -1.5 4,281,495 + HGI48_RS19070 0.19 +0.2 4,281,495 + HGI48_RS19070 0.19 -1.0 4,281,623 + HGI48_RS19070 0.52 -0.4 4,281,636 + HGI48_RS19070 0.55 -1.0 4,281,637 - HGI48_RS19070 0.55 +0.2 4,281,637 - HGI48_RS19070 0.55 -1.3
Or see this region's nucleotide sequence