Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS18140 and HGI48_RS18145 are separated by 2 nucleotides HGI48_RS18145 and HGI48_RS18150 overlap by 4 nucleotides HGI48_RS18150 and HGI48_RS18155 overlap by 4 nucleotides HGI48_RS18155 and HGI48_RS18160 are separated by 66 nucleotides
HGI48_RS18140: HGI48_RS18140 - hypothetical protein, at 4,069,533 to 4,070,099
_RS18140
HGI48_RS18145: HGI48_RS18145 - hypothetical protein, at 4,070,102 to 4,070,665
_RS18145
HGI48_RS18150: HGI48_RS18150 - hypothetical protein, at 4,070,662 to 4,071,228
_RS18150
HGI48_RS18155: HGI48_RS18155 - hypothetical protein, at 4,071,225 to 4,071,791
_RS18155
HGI48_RS18160: HGI48_RS18160 - Hcp family type VI secretion system effector, at 4,071,858 to 4,072,337
_RS18160
Position (kb) 4070
4071
4072 Strain fitness (log2 ratio) -2
-1
0
1 at 4070.056 kb on + strand at 4070.077 kb on + strand at 4070.151 kb on - strand at 4070.427 kb on + strand, within HGI48_RS18145 at 4070.451 kb on + strand at 4070.472 kb on - strand, within HGI48_RS18145 at 4070.488 kb on + strand, within HGI48_RS18145 at 4070.722 kb on - strand, within HGI48_RS18150 at 4070.808 kb on + strand, within HGI48_RS18150 at 4070.844 kb on + strand, within HGI48_RS18150 at 4070.844 kb on + strand, within HGI48_RS18150 at 4070.861 kb on + strand, within HGI48_RS18150 at 4071.112 kb on - strand, within HGI48_RS18150 at 4071.120 kb on + strand, within HGI48_RS18150 at 4071.120 kb on + strand, within HGI48_RS18150 at 4071.332 kb on - strand, within HGI48_RS18155 at 4071.412 kb on + strand, within HGI48_RS18155 at 4071.413 kb on - strand, within HGI48_RS18155 at 4071.416 kb on + strand, within HGI48_RS18155 at 4071.581 kb on + strand, within HGI48_RS18155 at 4071.612 kb on - strand, within HGI48_RS18155 at 4071.666 kb on - strand, within HGI48_RS18155 at 4071.691 kb on + strand, within HGI48_RS18155 at 4071.935 kb on + strand, within HGI48_RS18160 at 4071.935 kb on + strand, within HGI48_RS18160 at 4072.126 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,070,056 + +0.3 4,070,077 + -1.1 4,070,151 - -0.1 4,070,427 + HGI48_RS18145 0.58 -1.6 4,070,451 + +0.3 4,070,472 - HGI48_RS18145 0.66 -0.5 4,070,488 + HGI48_RS18145 0.68 -0.1 4,070,722 - HGI48_RS18150 0.11 -0.6 4,070,808 + HGI48_RS18150 0.26 -0.5 4,070,844 + HGI48_RS18150 0.32 +0.2 4,070,844 + HGI48_RS18150 0.32 +0.9 4,070,861 + HGI48_RS18150 0.35 -0.3 4,071,112 - HGI48_RS18150 0.79 +0.2 4,071,120 + HGI48_RS18150 0.81 +0.2 4,071,120 + HGI48_RS18150 0.81 -1.1 4,071,332 - HGI48_RS18155 0.19 -1.1 4,071,412 + HGI48_RS18155 0.33 +0.7 4,071,413 - HGI48_RS18155 0.33 +0.3 4,071,416 + HGI48_RS18155 0.34 +0.0 4,071,581 + HGI48_RS18155 0.63 -1.8 4,071,612 - HGI48_RS18155 0.68 -2.6 4,071,666 - HGI48_RS18155 0.78 -0.8 4,071,691 + HGI48_RS18155 0.82 -0.9 4,071,935 + HGI48_RS18160 0.16 -0.6 4,071,935 + HGI48_RS18160 0.16 +1.2 4,072,126 - -0.7
Or see this region's nucleotide sequence