Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16600

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,719,438	+				+1.4
3,719,439	-				-0.5
3,719,514	+		HGI48_RS16590	0.18	+0.5
3,719,514	+		HGI48_RS16590	0.18	-1.8
3,719,514	+				+1.2
3,719,515	-		HGI48_RS16590	0.18	-0.3
3,719,619	+		HGI48_RS16590	0.42	-0.8
3,719,619	+		HGI48_RS16590	0.42	+1.3
3,719,619	+		HGI48_RS16590	0.42	+0.3
3,719,620	-		HGI48_RS16590	0.42	+1.4
3,719,750	+		HGI48_RS16590	0.72	-0.4
3,719,751	-		HGI48_RS16590	0.72	-0.2
3,719,751	-		HGI48_RS16590	0.72	-1.0
3,719,751	-		HGI48_RS16590	0.72	+0.0
3,719,752	+		HGI48_RS16590	0.72	-0.8
3,719,820	+		HGI48_RS16590	0.87	-1.0
3,719,820	+				-0.2
3,719,820	+				-0.8
3,719,820	+		HGI48_RS16590	0.87	-0.1
3,719,820	+		HGI48_RS16590	0.87	+0.7
3,719,820	+		HGI48_RS16590	0.87	+0.8
3,719,821	-		HGI48_RS16590	0.88	+0.9
3,719,821	-		HGI48_RS16590	0.88	-1.2
3,719,822	+		HGI48_RS16590	0.88	-0.8
3,719,822	+		HGI48_RS16590	0.88	+0.3
3,719,822	+				-0.2
3,719,822	+		HGI48_RS16590	0.88	-0.7
3,719,835	+				-1.8
3,719,851	+				-0.9
3,719,904	+				-1.7
3,719,904	+				-1.0
3,719,904	+				-0.8
3,719,904	+				+1.5
3,719,904	+				-0.1
3,719,904	+				+1.4
3,719,904	+				-0.2
3,719,904	+				+0.2
3,719,904	+				+2.6
3,719,904	+				-0.2
3,719,904	+				-0.4
3,719,905	-				-1.2
3,719,905	-				-0.8
3,719,905	-				-0.3
3,719,905	-				-0.8
3,719,905	-				-0.5
3,719,905	-				-1.5
3,719,905	-				-0.4
3,719,905	-				-1.0
3,719,905	-				+0.1
3,719,905	-				+1.5
3,719,905	-				+0.1
3,719,906	+				+0.4
3,719,906	+				-0.8
3,719,906	+				+0.1
3,719,906	+				+0.4
3,719,906	+				+0.3
3,719,906	+				+0.8
3,719,907	-				-0.4
3,719,907	-				+0.8
3,719,907	-				+0.8
3,719,912	+				-0.5
3,719,913	-				-0.9
3,719,913	-				-1.2
3,719,916	+				+0.8
3,719,916	+				-1.2
3,719,916	+				-1.0
3,719,916	+				-1.6
3,719,916	+				-0.8
3,719,916	+				+0.8
3,719,916	+				-0.2
3,719,917	-				-0.6
3,719,917	-				-0.5
3,719,917	-				-0.4
3,719,917	-				-1.0
3,719,917	-				+0.4
3,719,917	-				-0.5
3,719,917	-				+0.8
3,719,917	-				+0.4
3,719,918	+				-1.2
3,719,918	+				+2.1
3,719,933	+				-2.7
3,719,967	+				+0.4
3,719,967	+				-2.2
3,719,968	-				+0.4
3,719,991	+				-1.1
3,719,991	+				+1.6
3,719,992	-				-1.4
3,719,992	-				+0.8
3,719,992	-				+1.4
3,719,993	+				-0.1
3,719,993	+				+0.3
3,719,993	+				-0.2
3,719,994	-				+0.2
3,720,015	-				+0.1
3,720,017	+				-0.4
3,720,017	+				+0.8
3,720,023	+				-0.5
3,720,023	+				+1.8
3,720,035	+				-1.0
3,720,035	+				-0.5
3,720,035	+				+1.0
3,720,035	+				-0.2
3,720,035	+				+0.4
3,720,051	+				-0.2
3,720,051	+		HGI48_RS16595	0.16	-0.3
3,720,052	-		HGI48_RS16595	0.17	-0.4
3,720,052	-		HGI48_RS16595	0.17	-0.8
3,720,052	-		HGI48_RS16595	0.17	-0.9
3,720,064	+		HGI48_RS16595	0.33	-1.4
3,720,106	+		HGI48_RS16595	0.88	-0.5
3,720,106	+		HGI48_RS16595	0.88	-0.5
3,720,107	-				-1.2
3,720,199	+				+0.8
3,720,200	-				-0.7
3,720,307	+				-0.5
3,720,308	-				-1.2
3,720,308	-				+1.3
3,720,308	-				-0.7
3,720,309	+				+0.4
3,720,310	-				-0.2
3,720,310	-				+0.4
3,720,310	-				-0.5
3,720,429	+		HGI48_RS16600	0.13	+0.3
3,720,429	+		HGI48_RS16600	0.13	-2.7
3,720,429	+		HGI48_RS16600	0.13	-1.1
3,720,430	-		HGI48_RS16600	0.13	-1.5
3,720,431	+		HGI48_RS16600	0.13	-1.2
3,720,597	+		HGI48_RS16600	0.26	-0.8
3,720,598	-		HGI48_RS16600	0.26	-1.1
3,720,782	+		HGI48_RS16600	0.41	+0.3
3,720,844	+		HGI48_RS16600	0.46	-1.8
3,720,844	+		HGI48_RS16600	0.46	+1.1
3,720,946	-		HGI48_RS16600	0.54	-0.4
3,720,946	-		HGI48_RS16600	0.54	-1.8
3,721,077	+		HGI48_RS16600	0.64	-1.5
3,721,167	+		HGI48_RS16600	0.72	+0.8
3,721,167	+		HGI48_RS16600	0.72	-1.1
3,721,167	+				+0.8
3,721,168	-		HGI48_RS16600	0.72	-0.2
3,721,168	-		HGI48_RS16600	0.72	+0.1
3,721,171	+		HGI48_RS16600	0.72	-0.6
3,721,172	-				-0.2
3,721,215	-		HGI48_RS16600	0.75	-1.7
3,721,482	+				-0.9
3,721,483	-				-0.5
3,721,535	-				-0.3
3,721,535	-				+0.4
3,721,539	-				-0.4
3,721,539	-				+0.1
3,721,539	-				+0.1
3,721,577	-				-0.7
3,721,646	+		HGI48_RS16605	0.10	-0.2
3,722,265	+		HGI48_RS16605	0.66	+0.6
3,722,265	+		HGI48_RS16605	0.66	-1.7
3,722,265	+		HGI48_RS16605	0.66	+0.4
3,722,356	+		HGI48_RS16605	0.75	-2.0
3,722,356	+		HGI48_RS16605	0.75	-0.8
3,722,356	+				-0.8