Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15060

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,387,685	+		HGI48_RS15050	0.47	+0.7
3,387,685	+		HGI48_RS15050	0.47	-0.7
3,387,685	+		HGI48_RS15050	0.47	-0.6
3,387,685	+		HGI48_RS15050	0.47	-0.5
3,387,685	+		HGI48_RS15050	0.47	+0.4
3,387,686	-				+0.7
3,387,706	+				+0.7
3,387,707	-		HGI48_RS15050	0.51	-0.3
3,387,713	-				+1.7
3,387,784	-		HGI48_RS15050	0.65	-1.7
3,387,815	+		HGI48_RS15050	0.71	-0.3
3,387,853	+		HGI48_RS15050	0.78	-0.7
3,387,853	+		HGI48_RS15050	0.78	-1.9
3,387,853	+		HGI48_RS15050	0.78	-0.2
3,387,854	-		HGI48_RS15050	0.78	-0.3
3,387,859	+		HGI48_RS15050	0.79	-0.3
3,388,049	+		HGI48_RS15055	0.12	+0.0
3,388,049	+		HGI48_RS15055	0.12	+1.0
3,388,049	+				+1.2
3,388,050	-		HGI48_RS15055	0.12	+0.2
3,388,050	-		HGI48_RS15055	0.12	-1.5
3,388,068	-		HGI48_RS15055	0.17	-0.7
3,388,068	-		HGI48_RS15055	0.17	-0.5
3,388,068	-		HGI48_RS15055	0.17	+0.2
3,388,085	+				+1.4
3,388,085	+		HGI48_RS15055	0.21	-1.0
3,388,085	+		HGI48_RS15055	0.21	+0.5
3,388,086	-		HGI48_RS15055	0.21	-1.5
3,388,086	-				-0.3
3,388,086	-		HGI48_RS15055	0.21	+1.0
3,388,086	-		HGI48_RS15055	0.21	+0.3
3,388,086	-		HGI48_RS15055	0.21	-1.3
3,388,086	-		HGI48_RS15055	0.21	+0.8
3,388,086	-				+2.1
3,388,086	-		HGI48_RS15055	0.21	-0.3
3,388,086	-		HGI48_RS15055	0.21	+0.5
3,388,086	-				-0.9
3,388,103	+		HGI48_RS15055	0.25	+0.1
3,388,103	+		HGI48_RS15055	0.25	-0.3
3,388,103	+		HGI48_RS15055	0.25	+0.2
3,388,103	+		HGI48_RS15055	0.25	-0.3
3,388,107	+		HGI48_RS15055	0.26	-0.9
3,388,107	+		HGI48_RS15055	0.26	-0.7
3,388,107	+		HGI48_RS15055	0.26	-0.3
3,388,107	+		HGI48_RS15055	0.26	-0.9
3,388,108	-				+0.1
3,388,108	-		HGI48_RS15055	0.26	+0.2
3,388,126	+		HGI48_RS15055	0.31	+0.4
3,388,126	+		HGI48_RS15055	0.31	-1.2
3,388,126	+		HGI48_RS15055	0.31	-0.9
3,388,127	-		HGI48_RS15055	0.31	-0.1
3,388,127	-		HGI48_RS15055	0.31	-3.2
3,388,127	-		HGI48_RS15055	0.31	-1.7
3,388,137	+		HGI48_RS15055	0.33	+0.2
3,388,137	+		HGI48_RS15055	0.33	-1.8
3,388,137	+		HGI48_RS15055	0.33	-0.7
3,388,138	-		HGI48_RS15055	0.34	-0.2
3,388,138	-		HGI48_RS15055	0.34	-0.3
3,388,138	-		HGI48_RS15055	0.34	-1.1
3,388,141	+		HGI48_RS15055	0.34	-2.3
3,388,142	-		HGI48_RS15055	0.35	+0.0
3,388,142	-		HGI48_RS15055	0.35	-2.7
3,388,166	+				+1.9
3,388,428	+				+0.5
3,388,428	+				+0.7
3,388,636	+				+1.5
3,388,636	+				+0.1
3,388,636	+				+0.1
3,388,636	+				+1.3
3,388,636	+				+0.2
3,388,637	-				-0.7
3,388,637	-				-0.8
3,388,637	-				-0.9
3,388,637	-				+0.6
3,388,637	-				-0.3
3,388,657	-				+0.2
3,388,834	+		HGI48_RS15060	0.23	-0.5
3,388,834	+		HGI48_RS15060	0.23	-1.7
3,388,834	+				-0.9
3,388,834	+				-0.3
3,388,834	+		HGI48_RS15060	0.23	-1.2
3,388,835	-		HGI48_RS15060	0.23	-0.6
3,388,835	-		HGI48_RS15060	0.23	-0.3
3,388,835	-		HGI48_RS15060	0.23	-0.1
3,388,835	-		HGI48_RS15060	0.23	+0.2
3,388,835	-		HGI48_RS15060	0.23	-0.6
3,388,835	-		HGI48_RS15060	0.23	-0.8
3,388,894	-		HGI48_RS15060	0.28	+0.7
3,388,904	+		HGI48_RS15060	0.29	+0.2
3,388,905	-		HGI48_RS15060	0.29	-0.5
3,388,905	-		HGI48_RS15060	0.29	-0.1
3,388,905	-		HGI48_RS15060	0.29	-1.3
3,388,905	-		HGI48_RS15060	0.29	+0.0
3,388,905	-		HGI48_RS15060	0.29	+0.3
3,389,045	+		HGI48_RS15060	0.42	-1.3
3,389,054	-		HGI48_RS15060	0.43	-1.1
3,389,079	+		HGI48_RS15060	0.45	-1.3
3,389,142	-		HGI48_RS15060	0.51	-0.3
3,389,142	-		HGI48_RS15060	0.51	-0.5
3,389,279	+		HGI48_RS15060	0.64	-0.3
3,389,518	+		HGI48_RS15060	0.86	+0.2
3,389,518	+		HGI48_RS15060	0.86	-1.2
3,389,518	+		HGI48_RS15060	0.86	+0.2
3,389,519	-		HGI48_RS15060	0.86	-0.6
3,389,615	+				+0.1
3,389,677	+				-0.3
3,389,677	+				+0.3
3,389,678	-				-0.4
3,389,683	+				+0.7
3,389,683	+				+0.7
3,389,746	+				-0.6
3,389,848	+				+0.7
3,389,923	+				+0.1
3,389,924	-				+0.9
3,389,924	-				-0.9
3,389,999	+				+2.2
3,390,000	-				-0.3
3,390,050	-				-0.2
3,390,050	-				-0.6
3,390,140	+		HGI48_RS15065	0.11	+0.7
3,390,199	+				-0.9
3,390,199	+				-0.3
3,390,199	+		HGI48_RS15065	0.16	+0.7
3,390,199	+		HGI48_RS15065	0.16	+0.9
3,390,199	+		HGI48_RS15065	0.16	+0.1
3,390,200	-		HGI48_RS15065	0.16	+0.7
3,390,200	-		HGI48_RS15065	0.16	-2.2
3,390,210	-		HGI48_RS15065	0.17	-1.3
3,390,210	-		HGI48_RS15065	0.17	+0.7
3,390,210	-		HGI48_RS15065	0.17	+0.1
3,390,215	+		HGI48_RS15065	0.17	-0.2
3,390,298	+		HGI48_RS15065	0.24	-0.2
3,390,298	+		HGI48_RS15065	0.24	+0.3
3,390,298	+		HGI48_RS15065	0.24	-0.6
3,390,328	-		HGI48_RS15065	0.27	+1.1
3,390,328	-		HGI48_RS15065	0.27	-1.3
3,390,362	+		HGI48_RS15065	0.29	-0.3
3,390,363	-		HGI48_RS15065	0.29	-0.2
3,390,407	+		HGI48_RS15065	0.33	-0.4
3,390,407	+		HGI48_RS15065	0.33	-0.3
3,390,407	+		HGI48_RS15065	0.33	-0.5
3,390,407	+				-0.3
3,390,407	+		HGI48_RS15065	0.33	-0.3
3,390,480	-		HGI48_RS15065	0.39	+0.2
3,390,480	-				+1.7
3,390,480	-		HGI48_RS15065	0.39	+0.1
3,390,480	-		HGI48_RS15065	0.39	-0.3
3,390,566	+		HGI48_RS15065	0.46	+0.4
3,390,566	+		HGI48_RS15065	0.46	+0.7
3,390,567	-		HGI48_RS15065	0.46	+0.3
3,390,567	-		HGI48_RS15065	0.46	+1.3
3,390,567	-		HGI48_RS15065	0.46	-0.2