Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15045

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,385,184	-				+0.4
3,385,253	+				-0.6
3,385,253	+				-0.1
3,385,307	+				+0.5
3,385,308	-				-0.1
3,385,557	+		HGI48_RS15040	0.85	+1.0
3,385,557	+		HGI48_RS15040	0.85	-1.3
3,385,558	-		HGI48_RS15040	0.86	-0.3
3,385,629	+				-0.9
3,385,630	-				-1.7
3,385,633	+				-0.2
3,385,634	-				-0.4
3,385,658	-				+0.1
3,385,668	+				-0.3
3,385,669	-				-0.3
3,385,669	-				+1.0
3,385,678	+				-0.3
3,385,687	-				+1.0
3,385,687	-				-1.7
3,385,707	-				+2.0
3,385,715	-				+0.4
3,386,005	+				-2.2
3,386,114	-				-0.3
3,386,170	+				-1.3
3,386,170	+				-1.2
3,386,171	-				+0.1
3,386,177	-				+1.1
3,386,177	-				-0.0
3,386,180	+				+0.6
3,386,180	+				-2.3
3,386,184	+				-0.3
3,386,184	+				-0.1
3,386,184	+				+0.4
3,386,187	+				-1.1
3,386,242	-				+0.5
3,386,242	-				-1.7
3,386,242	-				+0.7
3,386,242	-				+0.7
3,386,263	+				-0.2
3,386,263	+				-0.0
3,386,264	-				-0.3
3,386,266	+				+0.1
3,386,266	+				+0.7
3,386,266	+				-0.2
3,386,266	+				+0.1
3,386,266	+				+0.1
3,386,267	-				-0.3
3,386,267	-				+0.5
3,386,271	-				-2.2
3,386,271	-				+0.2
3,386,284	+		HGI48_RS15045	0.11	-0.3
3,386,297	-		HGI48_RS15045	0.12	-0.6
3,386,297	-		HGI48_RS15045	0.12	-0.9
3,386,356	+		HGI48_RS15045	0.18	+0.2
3,386,420	+		HGI48_RS15045	0.24	-1.8
3,386,420	+		HGI48_RS15045	0.24	-0.6
3,386,421	-		HGI48_RS15045	0.24	-1.2
3,386,421	-		HGI48_RS15045	0.24	-0.2
3,386,421	-		HGI48_RS15045	0.24	-1.3
3,386,426	+		HGI48_RS15045	0.25	+0.2
3,386,427	-		HGI48_RS15045	0.25	-1.7
3,386,439	+				+2.1
3,386,439	+		HGI48_RS15045	0.26	-0.2
3,386,439	+		HGI48_RS15045	0.26	-0.9
3,386,439	+		HGI48_RS15045	0.26	+0.3
3,386,440	-		HGI48_RS15045	0.26	-0.0
3,386,440	-		HGI48_RS15045	0.26	-0.1
3,386,560	+		HGI48_RS15045	0.38	-0.6
3,386,561	-		HGI48_RS15045	0.38	+1.4
3,386,666	-		HGI48_RS15045	0.48	-1.0
3,387,029	+		HGI48_RS15045	0.83	-1.3
3,387,029	+		HGI48_RS15045	0.83	-0.5
3,387,030	-		HGI48_RS15045	0.83	-1.8
3,387,130	+				-0.5
3,387,130	+				-0.8
3,387,130	+				-0.6
3,387,130	+				-0.1
3,387,131	-				-2.2
3,387,131	-				-0.1
3,387,131	-				+1.1
3,387,131	-				-1.7
3,387,131	-				+1.1
3,387,131	-				-0.3
3,387,143	+				-0.3
3,387,172	+				-1.2
3,387,172	+				+1.2
3,387,173	-				-0.2
3,387,173	-				-1.1
3,387,173	-				-0.3
3,387,173	-				+0.7
3,387,173	-				-0.8
3,387,308	+				-0.3
3,387,308	+				-0.3
3,387,309	-				-0.2
3,387,309	-				-0.1
3,387,427	+				+0.2
3,387,427	+				-1.9
3,387,427	+				+0.2
3,387,428	-				-1.7
3,387,428	-				-1.2
3,387,428	-				+1.0
3,387,461	+				-0.9
3,387,461	+				-1.9
3,387,462	-				+0.9
3,387,462	-				-0.3
3,387,534	-		HGI48_RS15050	0.20	-0.9
3,387,552	+		HGI48_RS15050	0.23	-1.7
3,387,553	-		HGI48_RS15050	0.23	-0.9
3,387,685	+		HGI48_RS15050	0.47	+0.7
3,387,685	+		HGI48_RS15050	0.47	-0.7
3,387,685	+		HGI48_RS15050	0.47	-0.6
3,387,685	+		HGI48_RS15050	0.47	-0.5
3,387,685	+		HGI48_RS15050	0.47	+0.4
3,387,686	-				+0.7
3,387,706	+				+0.7
3,387,707	-		HGI48_RS15050	0.51	-0.3
3,387,713	-				+1.7
3,387,784	-		HGI48_RS15050	0.65	-1.7
3,387,815	+		HGI48_RS15050	0.71	-0.3
3,387,853	+		HGI48_RS15050	0.78	-0.7
3,387,853	+		HGI48_RS15050	0.78	-1.9
3,387,853	+		HGI48_RS15050	0.78	-0.2
3,387,854	-		HGI48_RS15050	0.78	-0.3
3,387,859	+		HGI48_RS15050	0.79	-0.3
3,388,049	+		HGI48_RS15055	0.12	+0.0
3,388,049	+		HGI48_RS15055	0.12	+1.0
3,388,049	+				+1.2
3,388,050	-		HGI48_RS15055	0.12	+0.2
3,388,050	-		HGI48_RS15055	0.12	-1.5
3,388,068	-		HGI48_RS15055	0.17	-0.7
3,388,068	-		HGI48_RS15055	0.17	-0.5
3,388,068	-		HGI48_RS15055	0.17	+0.2
3,388,085	+				+1.4
3,388,085	+		HGI48_RS15055	0.21	-1.0
3,388,085	+		HGI48_RS15055	0.21	+0.5
3,388,086	-		HGI48_RS15055	0.21	-1.5
3,388,086	-				-0.3
3,388,086	-		HGI48_RS15055	0.21	+1.0
3,388,086	-		HGI48_RS15055	0.21	+0.3
3,388,086	-		HGI48_RS15055	0.21	-1.3
3,388,086	-		HGI48_RS15055	0.21	+0.8
3,388,086	-				+2.1
3,388,086	-		HGI48_RS15055	0.21	-0.3
3,388,086	-		HGI48_RS15055	0.21	+0.5
3,388,086	-				-0.9
3,388,103	+		HGI48_RS15055	0.25	+0.1
3,388,103	+		HGI48_RS15055	0.25	-0.3
3,388,103	+		HGI48_RS15055	0.25	+0.2
3,388,103	+		HGI48_RS15055	0.25	-0.3
3,388,107	+		HGI48_RS15055	0.26	-0.9
3,388,107	+		HGI48_RS15055	0.26	-0.7
3,388,107	+		HGI48_RS15055	0.26	-0.3
3,388,107	+		HGI48_RS15055	0.26	-0.9
3,388,108	-				+0.1
3,388,108	-		HGI48_RS15055	0.26	+0.2
3,388,126	+		HGI48_RS15055	0.31	+0.4
3,388,126	+		HGI48_RS15055	0.31	-1.2
3,388,126	+		HGI48_RS15055	0.31	-0.9
3,388,127	-		HGI48_RS15055	0.31	-0.1
3,388,127	-		HGI48_RS15055	0.31	-3.2
3,388,127	-		HGI48_RS15055	0.31	-1.7
3,388,137	+		HGI48_RS15055	0.33	+0.2
3,388,137	+		HGI48_RS15055	0.33	-1.8
3,388,137	+		HGI48_RS15055	0.33	-0.7
3,388,138	-		HGI48_RS15055	0.34	-0.2
3,388,138	-		HGI48_RS15055	0.34	-0.3
3,388,138	-		HGI48_RS15055	0.34	-1.1
3,388,141	+		HGI48_RS15055	0.34	-2.3
3,388,142	-		HGI48_RS15055	0.35	+0.0
3,388,142	-		HGI48_RS15055	0.35	-2.7
3,388,166	+				+1.9