Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15035

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,382,796	+		HGI48_RS15030	0.54	+0.2
3,382,840	+		HGI48_RS15030	0.57	-0.3
3,382,840	+		HGI48_RS15030	0.57	+0.4
3,382,840	+		HGI48_RS15030	0.57	-0.8
3,382,841	-				-0.9
3,382,841	-		HGI48_RS15030	0.57	-0.0
3,382,841	-		HGI48_RS15030	0.57	-1.3
3,382,843	+		HGI48_RS15030	0.57	+0.2
3,382,843	+				+0.7
3,382,844	-		HGI48_RS15030	0.57	-0.2
3,382,844	-		HGI48_RS15030	0.57	-2.3
3,382,844	-		HGI48_RS15030	0.57	+1.2
3,382,909	+		HGI48_RS15030	0.63	-0.8
3,382,909	+		HGI48_RS15030	0.63	-0.2
3,382,996	+		HGI48_RS15030	0.69	+0.9
3,382,997	-		HGI48_RS15030	0.70	+1.2
3,382,997	-				+1.2
3,382,997	-		HGI48_RS15030	0.70	-0.7
3,383,006	+		HGI48_RS15030	0.70	+1.2
3,383,222	-		HGI48_RS15030	0.87	+0.1
3,383,308	-				-0.3
3,383,308	-				-0.7
3,383,457	+				-1.4
3,383,457	+				+0.4
3,383,459	+				+0.2
3,383,460	-				-0.4
3,383,503	-				+0.1
3,383,544	+				+0.7
3,383,582	+				+0.7
3,383,606	-				-0.9
3,383,736	+				-0.2
3,383,736	+				-1.7
3,383,736	+				-1.3
3,383,736	+				-0.9
3,383,736	+				-0.1
3,383,737	-				-0.3
3,383,737	-				-0.7
3,383,743	-				+0.4
3,383,788	+				-0.3
3,383,789	-				-1.2
3,383,789	-				+0.1
3,383,955	+		HGI48_RS15035	0.21	+0.0
3,383,976	-		HGI48_RS15035	0.23	+0.9
3,383,985	-		HGI48_RS15035	0.23	+0.5
3,383,992	+		HGI48_RS15035	0.24	-0.2
3,383,992	+		HGI48_RS15035	0.24	-0.3
3,383,992	+		HGI48_RS15035	0.24	-0.3
3,383,992	+		HGI48_RS15035	0.24	+0.3
3,383,992	+		HGI48_RS15035	0.24	-0.1
3,383,992	+		HGI48_RS15035	0.24	-0.3
3,383,992	+				+1.1
3,383,993	-		HGI48_RS15035	0.24	-0.3
3,383,993	-		HGI48_RS15035	0.24	+1.0
3,383,993	-		HGI48_RS15035	0.24	+1.0
3,383,993	-		HGI48_RS15035	0.24	-0.3
3,383,993	-		HGI48_RS15035	0.24	-1.2
3,383,993	-		HGI48_RS15035	0.24	-1.8
3,384,025	+				+0.7
3,384,026	-		HGI48_RS15035	0.27	-0.3
3,384,026	-		HGI48_RS15035	0.27	+1.7
3,384,172	-		HGI48_RS15035	0.40	+1.0
3,384,186	+		HGI48_RS15035	0.41	-0.7
3,384,186	+		HGI48_RS15035	0.41	+0.2
3,384,187	-		HGI48_RS15035	0.42	-1.3
3,384,187	-		HGI48_RS15035	0.42	-1.7
3,384,187	-		HGI48_RS15035	0.42	-0.3
3,384,290	+		HGI48_RS15035	0.51	-1.2
3,384,290	+		HGI48_RS15035	0.51	-1.2
3,384,290	+		HGI48_RS15035	0.51	+0.5
3,384,290	+		HGI48_RS15035	0.51	-0.2
3,384,290	+		HGI48_RS15035	0.51	-1.7
3,384,291	-		HGI48_RS15035	0.51	+0.5
3,384,291	-		HGI48_RS15035	0.51	-0.3
3,384,291	-		HGI48_RS15035	0.51	+0.1
3,384,291	-		HGI48_RS15035	0.51	-0.3
3,384,291	-				+0.1
3,384,291	-		HGI48_RS15035	0.51	-0.6
3,384,291	-		HGI48_RS15035	0.51	-0.0
3,384,390	-		HGI48_RS15035	0.60	-0.8
3,384,392	+		HGI48_RS15035	0.60	+1.0
3,384,392	+		HGI48_RS15035	0.60	+0.3
3,384,393	-		HGI48_RS15035	0.60	-0.7
3,384,393	-		HGI48_RS15035	0.60	-0.2
3,384,393	-		HGI48_RS15035	0.60	-0.4
3,384,393	-		HGI48_RS15035	0.60	-0.8
3,384,393	-		HGI48_RS15035	0.60	+0.7
3,384,393	-		HGI48_RS15035	0.60	-0.8
3,384,425	-		HGI48_RS15035	0.63	-1.0
3,384,544	-		HGI48_RS15035	0.74	+0.4
3,384,544	-		HGI48_RS15035	0.74	-1.0
3,384,662	+		HGI48_RS15035	0.84	-0.5
3,384,662	+		HGI48_RS15035	0.84	+0.1
3,384,663	-		HGI48_RS15035	0.84	-0.3
3,384,849	+				+0.9
3,384,849	+				-0.2
3,384,850	-				+0.1
3,384,850	-				+0.2
3,384,850	-				-0.4
3,384,903	+				-0.1
3,384,903	+				-0.1
3,384,903	+				-1.7
3,384,903	+				-1.3
3,384,904	-				-2.8
3,384,904	-				+0.1
3,384,904	-				+0.2
3,384,904	-				-0.9
3,384,904	-				+1.4
3,384,905	+				-0.3
3,384,906	-				+0.7
3,384,906	-				-1.3
3,384,906	-				-0.3
3,384,919	+				-0.1
3,384,919	+				-1.9
3,384,920	-				-0.1
3,384,920	-				+0.7
3,384,997	-				-0.2
3,385,066	-				-0.3
3,385,088	-				+0.3
3,385,088	-				-0.3
3,385,147	+				+0.7
3,385,151	+				-2.8
3,385,152	-				-0.3
3,385,184	-				+0.4
3,385,253	+				-0.6
3,385,253	+				-0.1
3,385,307	+				+0.5
3,385,308	-				-0.1
3,385,557	+		HGI48_RS15040	0.85	+1.0
3,385,557	+		HGI48_RS15040	0.85	-1.3
3,385,558	-		HGI48_RS15040	0.86	-0.3
3,385,629	+				-0.9
3,385,630	-				-1.7
3,385,633	+				-0.2
3,385,634	-				-0.4
3,385,658	-				+0.1
3,385,668	+				-0.3
3,385,669	-				-0.3
3,385,669	-				+1.0
3,385,678	+				-0.3
3,385,687	-				+1.0
3,385,687	-				-1.7
3,385,707	-				+2.0
3,385,715	-				+0.4