Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14260

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS14255 and HGI48_RS14260 are separated by 96 nucleotidesHGI48_RS14260 and HGI48_RS14265 overlap by 4 nucleotidesHGI48_RS14265 and HGI48_RS14270 overlap by 4 nucleotidesHGI48_RS14270 and HGI48_RS14275 are separated by 10 nucleotides HGI48_RS14255: HGI48_RS14255 - NADH-quinone oxidoreductase subunit M, at 3,200,798 to 3,202,333 _RS14255 HGI48_RS14260: HGI48_RS14260 - NADH-quinone oxidoreductase subunit L, at 3,202,430 to 3,204,280 _RS14260 HGI48_RS14265: HGI48_RS14265 - NADH-quinone oxidoreductase subunit NuoK, at 3,204,277 to 3,204,579 _RS14265 HGI48_RS14270: HGI48_RS14270 - NADH-quinone oxidoreductase subunit J, at 3,204,576 to 3,205,127 _RS14270 HGI48_RS14275: HGI48_RS14275 - NADH-quinone oxidoreductase subunit NuoI, at 3,205,138 to 3,205,680 _RS14275 Position (kb) 3202 3203 3204 3205Strain fitness (log2 ratio) -2 -1 0 1at 3201.672 kb on + strand, within HGI48_RS14255at 3202.432 kb on - strandat 3202.488 kb on + strandat 3203.142 kb on + strand, within HGI48_RS14260at 3203.433 kb on - strand, within HGI48_RS14260at 3203.796 kb on + strand, within HGI48_RS14260at 3203.797 kb on - strand, within HGI48_RS14260at 3203.817 kb on + strand, within HGI48_RS14260at 3204.307 kb on - strandat 3204.395 kb on + strand, within HGI48_RS14265at 3204.718 kb on + strand, within HGI48_RS14270at 3204.719 kb on - strand, within HGI48_RS14270at 3205.042 kb on - strand, within HGI48_RS14270

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,201,672 + HGI48_RS14255 0.57 -0.1
3,202,432 - -0.3
3,202,488 + +1.2
3,203,142 + HGI48_RS14260 0.38 -1.7
3,203,433 - HGI48_RS14260 0.54 -1.7
3,203,796 + HGI48_RS14260 0.74 +0.5
3,203,797 - HGI48_RS14260 0.74 -2.1
3,203,817 + HGI48_RS14260 0.75 -0.4
3,204,307 - -1.2
3,204,395 + HGI48_RS14265 0.39 -0.6
3,204,718 + HGI48_RS14270 0.26 -1.2
3,204,719 - HGI48_RS14270 0.26 -1.0
3,205,042 - HGI48_RS14270 0.84 -1.5

Or see this region's nucleotide sequence