Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13995

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,130,183	-		HGI48_RS13985	0.80	+0.3
3,130,236	+		HGI48_RS13985	0.83	-1.0
3,130,236	+				+2.2
3,130,252	+		HGI48_RS13985	0.84	+0.6
3,130,252	+		HGI48_RS13985	0.84	-0.7
3,130,253	-		HGI48_RS13985	0.84	-0.6
3,130,253	-		HGI48_RS13985	0.84	+0.6
3,130,258	+		HGI48_RS13985	0.84	+0.3
3,130,258	+		HGI48_RS13985	0.84	-0.8
3,130,259	-		HGI48_RS13985	0.84	-0.4
3,130,268	-		HGI48_RS13985	0.85	-0.4
3,130,281	-		HGI48_RS13985	0.85	-0.8
3,130,281	-		HGI48_RS13985	0.85	-2.2
3,130,315	-		HGI48_RS13985	0.87	+0.9
3,130,320	+		HGI48_RS13985	0.87	+0.1
3,130,321	-		HGI48_RS13985	0.87	+1.1
3,130,475	+				-0.7
3,130,481	-				-2.2
3,130,486	+				-1.0
3,130,498	+				+0.2
3,130,498	+				-1.2
3,130,498	+				-2.2
3,130,500	+				+1.3
3,130,523	+				+0.8
3,130,523	+				-2.0
3,130,524	-				+0.6
3,130,524	-				-1.4
3,130,543	+				-1.4
3,130,544	-				+0.6
3,130,544	-				-1.1
3,130,547	+				-1.3
3,130,547	+				-0.1
3,130,547	+				-0.8
3,130,547	+				-1.4
3,130,548	-				-0.4
3,130,605	+				-0.4
3,130,605	+				+0.6
3,130,624	+				-0.9
3,130,624	+				-0.5
3,130,625	-				+1.4
3,130,626	+				-1.4
3,130,626	+				-0.6
3,130,626	+				+0.9
3,130,626	+				-0.7
3,130,626	+				-2.2
3,130,626	+				-0.1
3,130,626	+				-0.4
3,130,626	+				-0.4
3,130,627	-				-0.2
3,130,627	-				-0.2
3,130,627	-				+1.3
3,130,627	-				-0.5
3,130,627	-				-0.8
3,130,627	-				-1.2
3,130,628	+				+1.7
3,130,628	+				-1.4
3,130,628	+				+0.3
3,130,628	+				+0.2
3,130,628	+				-0.4
3,130,628	+				-0.4
3,130,628	+				-0.0
3,130,629	-				-0.4
3,130,629	-				-1.6
3,130,629	-				-1.1
3,130,668	+		HGI48_RS13990	0.17	-0.1
3,130,668	+				+1.2
3,130,668	+		HGI48_RS13990	0.17	+0.4
3,130,668	+		HGI48_RS13990	0.17	-0.6
3,130,669	-		HGI48_RS13990	0.17	+0.0
3,130,669	-		HGI48_RS13990	0.17	-0.9
3,130,669	-		HGI48_RS13990	0.17	+0.2
3,130,670	+		HGI48_RS13990	0.17	+0.3
3,130,671	-		HGI48_RS13990	0.18	-0.4
3,130,671	-		HGI48_RS13990	0.18	+0.4
3,130,683	+		HGI48_RS13990	0.20	+1.7
3,130,683	+		HGI48_RS13990	0.20	+0.1
3,130,683	+		HGI48_RS13990	0.20	+1.3
3,130,684	-		HGI48_RS13990	0.21	+1.7
3,130,688	-		HGI48_RS13990	0.21	-0.7
3,130,688	-		HGI48_RS13990	0.21	-0.7
3,130,712	+		HGI48_RS13990	0.27	-0.1
3,130,712	+		HGI48_RS13990	0.27	-0.4
3,130,713	-		HGI48_RS13990	0.27	-1.6
3,130,822	-		HGI48_RS13990	0.52	-0.0
3,130,857	+		HGI48_RS13990	0.60	-0.5
3,130,857	+		HGI48_RS13990	0.60	-0.6
3,130,857	+		HGI48_RS13990	0.60	-1.4
3,130,857	+		HGI48_RS13990	0.60	+0.3
3,130,858	-		HGI48_RS13990	0.60	+0.4
3,130,858	-		HGI48_RS13990	0.60	-1.2
3,130,858	-		HGI48_RS13990	0.60	-0.5
3,130,858	-		HGI48_RS13990	0.60	-0.8
3,130,858	-		HGI48_RS13990	0.60	-1.0
3,130,858	-				-0.0
3,130,931	+				+2.2
3,130,931	+				-0.0
3,130,932	-		HGI48_RS13990	0.77	-1.3
3,130,934	+		HGI48_RS13990	0.78	+0.2
3,130,964	+				-0.0
3,130,965	-		HGI48_RS13990	0.85	-0.7
3,131,029	+				+0.6
3,131,042	+				-0.1
3,131,042	+				-0.0
3,131,042	+				-0.2
3,131,043	-				-0.2
3,131,043	-				-1.7
3,131,046	+				+0.6
3,131,046	+				+1.4
3,131,127	+				-0.4
3,131,129	+				-1.8
3,131,140	+				+0.6
3,131,193	+		HGI48_RS13995	0.21	+0.3
3,131,193	+		HGI48_RS13995	0.21	+0.4
3,131,193	+		HGI48_RS13995	0.21	-0.0
3,131,350	+				-0.7
3,131,350	+				-0.7
3,131,351	-				+0.6
3,131,362	+				-0.4
3,131,362	+				-0.7
3,131,365	+				+0.6
3,131,365	+				+0.3
3,131,365	+				-1.0
3,131,366	-				+0.2
3,131,366	-				-1.4
3,131,366	-				+0.2
3,131,366	-				+1.3
3,131,366	-				-1.4
3,131,409	-				-0.0
3,131,409	-				+0.3
3,131,457	+				+0.1
3,131,473	+				-0.4
3,131,486	-				-1.6
3,131,486	-				-0.0
3,131,486	-				-0.3
3,131,529	-				+0.3
3,131,540	-				+0.1
3,131,546	+				-0.2
3,131,547	-				+0.3
3,131,547	-				-0.0
3,131,572	+				-0.7
3,131,572	+				-2.0
3,131,572	+				-0.1
3,131,573	-				+0.4
3,131,578	+				+0.3
3,131,579	-				+0.2
3,131,582	+				+0.6
3,131,583	-				+0.2
3,131,583	-				+0.6
3,131,583	-				-2.0
3,131,589	-				-1.7
3,131,643	+				+0.6
3,131,643	+				+0.0
3,131,678	+				-1.2
3,131,679	-				-4.1
3,131,679	-				-0.2
3,131,777	+				+1.3
3,131,777	+				+1.0
3,131,777	+		HGI48_RS14000	0.18	-0.2
3,131,879	+		HGI48_RS14000	0.28	-0.8
3,131,880	-		HGI48_RS14000	0.28	+1.0
3,131,966	+		HGI48_RS14000	0.37	-0.2
3,131,966	+		HGI48_RS14000	0.37	-1.4
3,131,966	+		HGI48_RS14000	0.37	-0.6
3,131,967	-		HGI48_RS14000	0.37	-1.6
3,131,967	-		HGI48_RS14000	0.37	+0.1
3,131,967	-		HGI48_RS14000	0.37	+1.1
3,131,967	-		HGI48_RS14000	0.37	-0.0
3,132,010	+		HGI48_RS14000	0.41	-0.6
3,132,096	+				+0.6
3,132,096	+		HGI48_RS14000	0.50	+0.1
3,132,097	-				+2.6
3,132,188	+				+0.6
3,132,189	-		HGI48_RS14000	0.59	+1.3
3,132,217	+		HGI48_RS14000	0.61	+0.6