Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13955

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,118,868	+				-0.3
3,118,881	+				+0.2
3,118,882	-				-0.4
3,118,918	-				+0.6
3,118,937	+				+1.2
3,118,937	+				+0.4
3,119,024	+		HGI48_RS13940	0.31	-0.2
3,119,025	-		HGI48_RS13940	0.32	-0.2
3,119,025	-		HGI48_RS13940	0.32	-1.0
3,119,025	-		HGI48_RS13940	0.32	+0.1
3,119,084	+		HGI48_RS13940	0.47	-0.4
3,119,084	+		HGI48_RS13940	0.47	-0.8
3,119,116	-		HGI48_RS13940	0.56	+0.1
3,119,163	+		HGI48_RS13940	0.69	-0.4
3,119,164	-		HGI48_RS13940	0.69	-0.6
3,119,211	+		HGI48_RS13940	0.81	+0.2
3,119,238	+		HGI48_RS13940	0.89	-0.3
3,119,239	-		HGI48_RS13940	0.89	+1.3
3,119,320	+		HGI48_RS13945	0.15	-1.0
3,119,334	+		HGI48_RS13945	0.21	+0.8
3,119,383	+		HGI48_RS13945	0.38	+0.4
3,119,383	+		HGI48_RS13945	0.38	-0.5
3,119,383	+		HGI48_RS13945	0.38	-0.0
3,119,383	+		HGI48_RS13945	0.38	+0.4
3,119,383	+		HGI48_RS13945	0.38	-0.6
3,119,383	+		HGI48_RS13945	0.38	-1.0
3,119,383	+		HGI48_RS13945	0.38	-0.4
3,119,383	+				+1.2
3,119,383	+		HGI48_RS13945	0.38	-0.6
3,119,383	+		HGI48_RS13945	0.38	-0.4
3,119,383	+		HGI48_RS13945	0.38	-0.4
3,119,383	+		HGI48_RS13945	0.38	+0.9
3,119,384	-		HGI48_RS13945	0.39	+0.1
3,119,384	-		HGI48_RS13945	0.39	-1.4
3,119,384	-		HGI48_RS13945	0.39	+0.1
3,119,384	-		HGI48_RS13945	0.39	-2.6
3,119,384	-		HGI48_RS13945	0.39	-1.4
3,119,384	-		HGI48_RS13945	0.39	+0.6
3,119,384	-		HGI48_RS13945	0.39	+1.1
3,119,384	-		HGI48_RS13945	0.39	-0.7
3,119,384	-				+0.6
3,119,384	-		HGI48_RS13945	0.39	-0.4
3,119,384	-		HGI48_RS13945	0.39	-1.4
3,119,384	-		HGI48_RS13945	0.39	+0.2
3,119,384	-		HGI48_RS13945	0.39	+0.1
3,119,384	-		HGI48_RS13945	0.39	-1.7
3,119,389	-		HGI48_RS13945	0.41	-0.2
3,119,389	-		HGI48_RS13945	0.41	-1.2
3,119,436	+		HGI48_RS13945	0.58	-0.2
3,119,548	+				-0.2
3,119,548	+				+0.6
3,119,549	-				-2.4
3,119,571	+				+0.2
3,119,571	+				+0.4
3,119,571	+				-0.6
3,119,572	-				-0.3
3,119,572	-				+0.3
3,119,591	+		HGI48_RS13950	0.14	+0.4
3,119,592	-		HGI48_RS13950	0.14	-2.2
3,119,642	+		HGI48_RS13950	0.30	+0.7
3,119,642	+		HGI48_RS13950	0.30	-1.2
3,119,642	+		HGI48_RS13950	0.30	+0.6
3,119,642	+		HGI48_RS13950	0.30	-1.4
3,119,642	+		HGI48_RS13950	0.30	+0.4
3,119,642	+		HGI48_RS13950	0.30	-3.2
3,119,643	-		HGI48_RS13950	0.30	+0.8
3,119,643	-		HGI48_RS13950	0.30	-0.6
3,119,664	+				+1.8
3,119,672	-		HGI48_RS13950	0.40	-0.3
3,119,786	+		HGI48_RS13950	0.76	-2.6
3,119,787	-		HGI48_RS13950	0.76	-0.0
3,119,787	-		HGI48_RS13950	0.76	-0.8
3,119,789	+		HGI48_RS13950	0.77	-0.7
3,119,790	-		HGI48_RS13950	0.77	-0.8
3,119,841	-				+0.3
3,119,845	+				-1.2
3,119,865	+				+0.6
3,119,865	+				+0.2
3,119,866	-				+1.2
3,120,121	+				+0.3
3,120,122	-				-1.0
3,120,122	-				-0.2
3,120,122	-				-0.4
3,120,132	+				-0.1
3,120,132	+				-0.7
3,120,132	+				+0.1
3,120,144	+				+0.4
3,120,145	-				-0.4
3,120,150	+				+0.6
3,120,151	-				+0.1
3,120,151	-				-0.2
3,120,156	-				-0.0
3,120,215	+				+0.3
3,120,216	-				-1.5
3,120,231	+				-0.8
3,120,232	-				+0.9
3,120,232	-				-1.1
3,120,232	-				-1.5
3,120,248	+				-0.1
3,120,249	-				+0.9
3,120,249	-				+1.3
3,120,249	-				-0.3
3,120,249	-				+1.2
3,120,307	+				-0.9
3,120,307	+				-0.3
3,120,308	-				-1.0
3,120,440	+		HGI48_RS13960	0.11	-0.8
3,120,482	+		HGI48_RS13960	0.36	-1.7
3,120,483	-		HGI48_RS13960	0.36	-1.7
3,120,524	+				-1.0
3,120,524	+		HGI48_RS13960	0.60	-2.0
3,120,524	+		HGI48_RS13960	0.60	-0.4
3,120,524	+		HGI48_RS13960	0.60	-0.4
3,120,524	+		HGI48_RS13960	0.60	-0.3
3,120,524	+		HGI48_RS13960	0.60	-2.7
3,120,524	+		HGI48_RS13960	0.60	-0.4
3,120,524	+				+0.6
3,120,525	-		HGI48_RS13960	0.61	-0.6
3,120,525	-		HGI48_RS13960	0.61	+0.6
3,120,525	-		HGI48_RS13960	0.61	+0.9
3,120,656	+				-1.0
3,120,656	+				+0.8
3,120,656	+				-1.4
3,120,656	+				+1.3
3,120,656	+				-0.6
3,120,657	-				+0.6
3,120,657	-				+0.1
3,120,806	+				-0.6
3,120,807	-				-1.4
3,120,807	-				+0.8
3,120,828	-				-0.1
3,120,872	-				+0.6
3,120,944	+		HGI48_RS13965	0.15	+0.3
3,120,944	+				+1.3
3,120,944	+		HGI48_RS13965	0.15	-0.4
3,120,945	-		HGI48_RS13965	0.15	+0.6
3,120,945	-				+3.9
3,120,945	-		HGI48_RS13965	0.15	-2.0
3,121,024	-		HGI48_RS13965	0.19	-0.2
3,121,024	-				+0.6
3,121,025	+		HGI48_RS13965	0.19	+0.2
3,121,025	+		HGI48_RS13965	0.19	-0.1
3,121,025	+		HGI48_RS13965	0.19	-0.8
3,121,026	-		HGI48_RS13965	0.19	-1.3
3,121,026	-				-0.0
3,121,026	-		HGI48_RS13965	0.19	-0.2
3,121,026	-		HGI48_RS13965	0.19	-0.7
3,121,059	-		HGI48_RS13965	0.21	-0.9
3,121,093	-				-0.0
3,121,093	-		HGI48_RS13965	0.23	-0.4