Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13855

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,085,541	-		HGI48_RS13845	0.59	-0.6
3,085,625	-		HGI48_RS13845	0.68	-0.2
3,085,642	-		HGI48_RS13845	0.70	-0.5
3,085,676	-				+0.6
3,085,717	-		HGI48_RS13845	0.79	-1.0
3,085,805	+		HGI48_RS13845	0.88	-2.0
3,085,806	-		HGI48_RS13845	0.89	+1.1
3,085,889	+				-0.1
3,085,890	-				+0.2
3,085,890	-				+0.6
3,085,938	+				-0.4
3,085,938	+				-0.4
3,085,938	+				+0.2
3,085,939	-				-0.6
3,085,939	-				+0.6
3,085,939	-				+0.3
3,085,974	-		HGI48_RS13850	0.13	-0.4
3,085,974	-		HGI48_RS13850	0.13	+0.8
3,086,013	+				+1.0
3,086,013	+		HGI48_RS13850	0.20	-1.0
3,086,013	+				-0.0
3,086,014	-		HGI48_RS13850	0.20	+1.1
3,086,133	-		HGI48_RS13850	0.43	-1.0
3,086,144	-		HGI48_RS13850	0.45	+0.1
3,086,154	+		HGI48_RS13850	0.47	-0.2
3,086,154	+				-0.0
3,086,154	+		HGI48_RS13850	0.47	-0.2
3,086,154	+		HGI48_RS13850	0.47	-0.8
3,086,154	+		HGI48_RS13850	0.47	-0.6
3,086,154	+		HGI48_RS13850	0.47	-1.0
3,086,155	-		HGI48_RS13850	0.47	+0.4
3,086,155	-		HGI48_RS13850	0.47	-1.8
3,086,155	-		HGI48_RS13850	0.47	+0.3
3,086,162	-		HGI48_RS13850	0.49	-0.5
3,086,191	+		HGI48_RS13850	0.54	-0.4
3,086,192	-		HGI48_RS13850	0.54	-0.9
3,086,209	+		HGI48_RS13850	0.58	-1.4
3,086,252	-				+0.6
3,086,258	-		HGI48_RS13850	0.67	-0.5
3,086,296	+		HGI48_RS13850	0.74	-0.1
3,086,297	-		HGI48_RS13850	0.74	-0.4
3,086,297	-		HGI48_RS13850	0.74	+0.6
3,086,297	-				+1.3
3,086,297	-		HGI48_RS13850	0.74	-0.2
3,086,297	-		HGI48_RS13850	0.74	-0.8
3,086,297	-		HGI48_RS13850	0.74	-0.7
3,086,297	-		HGI48_RS13850	0.74	-0.8
3,086,338	+				-0.0
3,086,338	+		HGI48_RS13850	0.82	-0.4
3,086,339	-		HGI48_RS13850	0.82	+0.3
3,086,339	-		HGI48_RS13850	0.82	+1.4
3,086,342	+		HGI48_RS13850	0.83	-0.3
3,086,342	+		HGI48_RS13850	0.83	-0.2
3,086,342	+		HGI48_RS13850	0.83	+0.1
3,086,342	+		HGI48_RS13850	0.83	-2.2
3,086,343	-		HGI48_RS13850	0.83	-1.2
3,086,343	-		HGI48_RS13850	0.83	-0.2
3,086,343	-		HGI48_RS13850	0.83	-3.4
3,086,363	-				+1.0
3,086,363	-		HGI48_RS13850	0.87	+0.2
3,086,425	+				-1.4
3,086,431	+				-0.5
3,086,431	+				-0.6
3,086,431	+				-0.3
3,086,432	-				-2.0
3,086,432	-				-0.6
3,086,432	-				-0.3
3,086,459	-				+0.3
3,086,478	+				-1.0
3,086,479	-				+1.0
3,086,487	+				+0.9
3,086,488	-				+0.6
3,086,513	+				+2.7
3,086,513	+				+0.1
3,086,513	+				+1.1
3,086,514	-				-1.4
3,086,514	-				+0.2
3,086,542	+				-0.2
3,086,542	+				+0.6
3,086,564	+				-1.1
3,086,564	+				-0.4
3,086,564	+				+1.1
3,086,564	+				-0.4
3,086,565	-				+1.4
3,086,565	-				-0.0
3,086,565	-				-2.0
3,086,568	-				+0.0
3,086,568	-				-2.2
3,086,583	+				+1.5
3,086,583	+				-0.0
3,086,583	+				-1.4
3,086,584	-				-1.7
3,086,584	-				-0.9
3,086,584	-				-2.4
3,086,615	+				-0.2
3,086,615	+				-1.8
3,086,661	-		HGI48_RS13855	0.11	+0.8
3,087,232	+		HGI48_RS13855	0.42	+0.9
3,087,232	+		HGI48_RS13855	0.42	-0.2
3,087,267	+				+0.6
3,087,267	+		HGI48_RS13855	0.44	-2.0
3,087,268	-		HGI48_RS13855	0.44	-0.7
3,087,407	+		HGI48_RS13855	0.51	-1.8
3,087,688	+		HGI48_RS13855	0.66	-0.8
3,087,808	+		HGI48_RS13855	0.73	-0.6
3,087,809	-		HGI48_RS13855	0.73	+0.4
3,087,809	-		HGI48_RS13855	0.73	+0.2
3,087,809	-		HGI48_RS13855	0.73	+0.3
3,087,866	-		HGI48_RS13855	0.76	+0.3
3,088,533	-		HGI48_RS13860	0.21	+0.6
3,088,700	+		HGI48_RS13860	0.53	-0.2
3,088,701	-		HGI48_RS13860	0.53	-0.4
3,088,853	+		HGI48_RS13860	0.82	+0.1
3,089,190	+				+0.9
3,089,190	+				+1.6
3,089,191	-				+0.6
3,089,197	+				+1.9
3,089,287	+				-0.0
3,089,287	+				-0.2
3,089,288	-				+1.1