Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11845

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,585,876	+				-1.3
2,585,996	-				+1.0
2,586,245	+		HGI48_RS11840	0.29	-1.4
2,586,277	+		HGI48_RS11840	0.32	-0.3
2,586,278	-		HGI48_RS11840	0.33	-0.5
2,586,417	+		HGI48_RS11840	0.50	+1.3
2,586,417	+		HGI48_RS11840	0.50	-1.8
2,586,417	+				+0.5
2,586,418	-		HGI48_RS11840	0.50	-2.5
2,586,563	+		HGI48_RS11840	0.67	-0.5
2,586,564	-		HGI48_RS11840	0.68	-2.1
2,586,746	+		HGI48_RS11840	0.90	-0.7
2,586,749	+				-1.3
2,586,756	-				+0.9
2,586,905	-				-0.4
2,586,906	+				+1.0
2,586,906	+				-0.3
2,586,906	+				+0.1
2,586,906	+				-0.6
2,586,906	+				-0.0
2,586,906	+				-0.9
2,586,906	+				-0.6
2,586,906	+				-0.5
2,586,907	-				+0.5
2,586,907	-				-1.1
2,586,907	-				+0.2
2,586,915	+				+0.2
2,586,915	+				-1.9
2,586,915	+				-1.1
2,586,915	+				+0.5
2,586,916	-				-0.4
2,586,916	-				+0.5
2,587,006	-				+0.9
2,587,006	-		HGI48_RS11845	0.11	+1.6
2,587,006	-		HGI48_RS11845	0.11	+0.8
2,587,049	-		HGI48_RS11845	0.15	+0.6
2,587,053	+		HGI48_RS11845	0.15	-0.6
2,587,053	+		HGI48_RS11845	0.15	-0.5
2,587,053	+		HGI48_RS11845	0.15	-0.1
2,587,054	-		HGI48_RS11845	0.15	-0.4
2,587,054	-		HGI48_RS11845	0.15	+1.1
2,587,054	-		HGI48_RS11845	0.15	+0.1
2,587,107	+		HGI48_RS11845	0.19	-1.5
2,587,122	+		HGI48_RS11845	0.20	-0.5
2,587,122	+		HGI48_RS11845	0.20	+1.5
2,587,122	+		HGI48_RS11845	0.20	-0.3
2,587,122	+		HGI48_RS11845	0.20	+0.5
2,587,122	+		HGI48_RS11845	0.20	+1.3
2,587,122	+				+2.3
2,587,123	-		HGI48_RS11845	0.20	-1.4
2,587,123	-				-1.1
2,587,123	-		HGI48_RS11845	0.20	-1.9
2,587,123	-		HGI48_RS11845	0.20	-0.2
2,587,123	-		HGI48_RS11845	0.20	+0.1
2,587,123	-		HGI48_RS11845	0.20	-0.4
2,587,123	-		HGI48_RS11845	0.20	-1.4
2,587,123	-		HGI48_RS11845	0.20	-0.4
2,587,123	-				+0.5
2,587,123	-				+0.9
2,587,179	+		HGI48_RS11845	0.25	+0.9
2,587,179	+		HGI48_RS11845	0.25	-1.5
2,587,179	+				-1.1
2,587,179	+		HGI48_RS11845	0.25	-0.3
2,587,179	+		HGI48_RS11845	0.25	-0.5
2,587,179	+		HGI48_RS11845	0.25	-1.0
2,587,180	-		HGI48_RS11845	0.25	-0.2
2,587,180	-				+1.5
2,587,180	-		HGI48_RS11845	0.25	-2.4
2,587,180	-		HGI48_RS11845	0.25	-0.1
2,587,180	-		HGI48_RS11845	0.25	+0.0
2,587,209	+				+2.5
2,587,257	+		HGI48_RS11845	0.31	-0.9
2,587,258	-				+1.2
2,587,258	-				-1.1
2,587,258	-				+1.2
2,587,536	+		HGI48_RS11845	0.53	+0.0
2,587,536	+		HGI48_RS11845	0.53	-0.9
2,587,536	+		HGI48_RS11845	0.53	-0.7
2,587,536	+		HGI48_RS11845	0.53	+0.3
2,587,536	+				+0.5
2,587,536	+		HGI48_RS11845	0.53	+0.6
2,587,536	+		HGI48_RS11845	0.53	-1.7
2,587,536	+		HGI48_RS11845	0.53	-0.2
2,587,537	-		HGI48_RS11845	0.53	-0.7
2,587,537	-				+2.5
2,587,537	-		HGI48_RS11845	0.53	-0.1
2,587,537	-		HGI48_RS11845	0.53	-0.4
2,587,537	-				-0.5
2,587,537	-		HGI48_RS11845	0.53	+0.7
2,587,537	-		HGI48_RS11845	0.53	-2.4
2,587,591	+		HGI48_RS11845	0.57	-2.4
2,587,614	+		HGI48_RS11845	0.59	-0.3
2,587,614	+		HGI48_RS11845	0.59	+0.3
2,587,614	+		HGI48_RS11845	0.59	-0.3
2,587,615	-		HGI48_RS11845	0.59	+0.3
2,587,615	-		HGI48_RS11845	0.59	+0.7
2,587,617	+		HGI48_RS11845	0.59	-0.3
2,587,618	-		HGI48_RS11845	0.59	-1.1
2,587,618	-		HGI48_RS11845	0.59	+0.2
2,588,134	+				+0.2
2,588,134	+				+0.3
2,588,134	+				-0.2
2,588,134	+				+1.5
2,588,134	+				+0.5
2,588,134	+				-0.1
2,588,134	+				-0.1
2,588,135	-				-0.9
2,588,135	-				-1.0
2,588,135	-				+0.5
2,588,135	-				+0.3
2,588,135	-				-0.2
2,588,172	+				+0.5
2,588,416	+				+1.2
2,588,416	+		HGI48_RS11850	0.24	-0.0
2,588,416	+		HGI48_RS11850	0.24	-1.2
2,588,416	+				+1.0
2,588,417	-				-0.1
2,588,417	-		HGI48_RS11850	0.24	+0.4
2,588,417	-		HGI48_RS11850	0.24	+0.9
2,588,417	-		HGI48_RS11850	0.24	-0.0
2,588,417	-		HGI48_RS11850	0.24	-0.5
2,588,417	-		HGI48_RS11850	0.24	-0.5
2,588,447	-		HGI48_RS11850	0.27	+0.5
2,588,458	-		HGI48_RS11850	0.28	+0.2
2,588,479	+				+0.5
2,588,480	-		HGI48_RS11850	0.30	+0.5
2,588,668	-		HGI48_RS11850	0.48	-1.4
2,588,668	-		HGI48_RS11850	0.48	+0.5
2,588,668	-		HGI48_RS11850	0.48	+0.9
2,588,817	+		HGI48_RS11850	0.63	-0.3
2,588,817	+		HGI48_RS11850	0.63	+0.1
2,588,817	+		HGI48_RS11850	0.63	+0.0
2,588,817	+		HGI48_RS11850	0.63	+0.0
2,588,817	+		HGI48_RS11850	0.63	+1.2
2,588,817	+		HGI48_RS11850	0.63	-0.7
2,588,818	-		HGI48_RS11850	0.63	+0.5
2,588,818	-		HGI48_RS11850	0.63	-0.8
2,588,818	-		HGI48_RS11850	0.63	+1.6
2,588,818	-		HGI48_RS11850	0.63	+0.6
2,588,818	-		HGI48_RS11850	0.63	+0.0
2,588,818	-		HGI48_RS11850	0.63	+0.0
2,589,033	+				+0.9
2,589,033	+		HGI48_RS11850	0.84	-0.7
2,589,034	-				+1.5
2,589,034	-		HGI48_RS11850	0.84	+1.6
2,589,034	-				+2.0
2,589,034	-		HGI48_RS11850	0.84	+0.5
2,589,034	-		HGI48_RS11850	0.84	+0.5