Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS11100 and HGI48_RS11105 overlap by 4 nucleotides HGI48_RS11105 and HGI48_RS11110 are separated by 348 nucleotides HGI48_RS11110 and HGI48_RS11115 are separated by 36 nucleotides
HGI48_RS11100: HGI48_RS11100 - exodeoxyribonuclease V subunit beta, at 2,407,081 to 2,410,764
_RS11100
HGI48_RS11105: HGI48_RS11105 - exodeoxyribonuclease V subunit gamma, at 2,410,761 to 2,414,237
_RS11105
HGI48_RS11110: HGI48_RS11110 - CesT family type III secretion system chaperone, at 2,414,586 to 2,415,053
_RS11110
HGI48_RS11115: HGI48_RS11115 - AvrE-family type 3 secretion system effector, at 2,415,090 to 2,419,970
_RS11115
Position (kb)
2410
2411
2412
2413
2414
2415 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2410.748 kb on - strand at 2414.221 kb on - strand at 2414.299 kb on - strand at 2414.303 kb on + strand at 2414.303 kb on + strand at 2414.304 kb on - strand at 2414.450 kb on + strand at 2414.451 kb on - strand at 2414.543 kb on + strand at 2414.543 kb on + strand at 2414.543 kb on + strand at 2414.544 kb on - strand at 2414.544 kb on - strand at 2414.544 kb on - strand at 2414.544 kb on - strand at 2414.544 kb on - strand at 2414.545 kb on + strand at 2414.546 kb on - strand at 2414.569 kb on + strand at 2414.569 kb on + strand at 2414.569 kb on + strand at 2414.570 kb on - strand at 2414.570 kb on - strand at 2414.570 kb on - strand at 2414.570 kb on - strand at 2414.654 kb on - strand, within HGI48_RS11110 at 2414.731 kb on + strand at 2414.732 kb on - strand, within HGI48_RS11110 at 2414.800 kb on + strand, within HGI48_RS11110 at 2414.801 kb on - strand, within HGI48_RS11110 at 2414.874 kb on + strand at 2414.924 kb on + strand, within HGI48_RS11110 at 2414.924 kb on + strand, within HGI48_RS11110 at 2414.925 kb on - strand, within HGI48_RS11110 at 2415.225 kb on - strand at 2415.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,410,748 - +0.1 2,414,221 - -1.6 2,414,299 - +0.4 2,414,303 + -0.1 2,414,303 + +2.0 2,414,304 - -2.4 2,414,450 + -1.3 2,414,451 - +1.8 2,414,543 + +0.4 2,414,543 + +0.0 2,414,543 + +0.8 2,414,544 - -0.3 2,414,544 - +0.1 2,414,544 - -1.6 2,414,544 - +0.1 2,414,544 - -2.4 2,414,545 + +0.1 2,414,546 - +0.0 2,414,569 + -1.5 2,414,569 + -0.3 2,414,569 + -0.0 2,414,570 - -0.2 2,414,570 - +1.1 2,414,570 - -1.9 2,414,570 - +0.1 2,414,654 - HGI48_RS11110 0.15 +1.3 2,414,731 + +0.4 2,414,732 - HGI48_RS11110 0.31 -0.8 2,414,800 + HGI48_RS11110 0.46 -0.8 2,414,801 - HGI48_RS11110 0.46 -0.3 2,414,874 + -0.6 2,414,924 + HGI48_RS11110 0.72 +1.4 2,414,924 + HGI48_RS11110 0.72 -0.1 2,414,925 - HGI48_RS11110 0.72 +0.8 2,415,225 - -0.3 2,415,225 - -0.3
Or see this region's nucleotide sequence