Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07635

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS07630 and HGI48_RS07635 are separated by 139 nucleotidesHGI48_RS07635 and HGI48_RS07640 are separated by 53 nucleotides HGI48_RS07630: HGI48_RS07630 - substrate-binding domain-containing protein, at 1,627,589 to 1,628,614 _RS07630 HGI48_RS07635: HGI48_RS07635 - alpha-galactosidase, at 1,628,754 to 1,630,883 _RS07635 HGI48_RS07640: HGI48_RS07640 - MFS transporter, at 1,630,937 to 1,632,217 _RS07640 Position (kb) 1628 1629 1630 1631Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1627.810 kb on + strand, within HGI48_RS07630at 1627.820 kb on - strand, within HGI48_RS07630at 1627.991 kb on + strand, within HGI48_RS07630at 1628.411 kb on + strand, within HGI48_RS07630at 1628.411 kb on + strandat 1628.411 kb on + strand, within HGI48_RS07630at 1628.412 kb on - strand, within HGI48_RS07630at 1628.437 kb on - strand, within HGI48_RS07630at 1628.439 kb on + strand, within HGI48_RS07630at 1628.439 kb on + strand, within HGI48_RS07630at 1628.440 kb on - strand, within HGI48_RS07630at 1628.440 kb on - strand, within HGI48_RS07630at 1628.440 kb on - strand, within HGI48_RS07630at 1628.440 kb on - strand, within HGI48_RS07630at 1628.721 kb on + strandat 1628.721 kb on + strandat 1628.721 kb on + strandat 1628.722 kb on - strandat 1628.722 kb on - strandat 1628.722 kb on - strandat 1628.722 kb on - strandat 1628.828 kb on - strandat 1628.828 kb on - strandat 1628.828 kb on - strandat 1628.833 kb on - strandat 1628.833 kb on - strandat 1629.005 kb on + strand, within HGI48_RS07635at 1629.006 kb on - strand, within HGI48_RS07635at 1629.006 kb on - strandat 1629.104 kb on - strand, within HGI48_RS07635at 1629.104 kb on - strand, within HGI48_RS07635at 1629.333 kb on + strand, within HGI48_RS07635at 1629.397 kb on + strand, within HGI48_RS07635at 1629.397 kb on + strand, within HGI48_RS07635at 1629.397 kb on + strand, within HGI48_RS07635at 1629.397 kb on + strand, within HGI48_RS07635at 1629.397 kb on + strand, within HGI48_RS07635at 1629.398 kb on - strand, within HGI48_RS07635at 1629.398 kb on - strand, within HGI48_RS07635at 1629.480 kb on + strand, within HGI48_RS07635at 1629.480 kb on + strand, within HGI48_RS07635at 1629.480 kb on + strand, within HGI48_RS07635at 1629.480 kb on + strand, within HGI48_RS07635at 1629.481 kb on - strand, within HGI48_RS07635at 1629.524 kb on + strand, within HGI48_RS07635at 1629.525 kb on - strand, within HGI48_RS07635at 1629.537 kb on + strand, within HGI48_RS07635at 1629.666 kb on + strand, within HGI48_RS07635at 1629.666 kb on + strand, within HGI48_RS07635at 1629.667 kb on - strand, within HGI48_RS07635at 1629.667 kb on - strand, within HGI48_RS07635at 1629.671 kb on + strandat 1629.672 kb on - strand, within HGI48_RS07635at 1629.688 kb on - strand, within HGI48_RS07635at 1629.738 kb on - strandat 1629.738 kb on - strand, within HGI48_RS07635at 1629.738 kb on - strand, within HGI48_RS07635at 1629.738 kb on - strand, within HGI48_RS07635at 1629.798 kb on + strand, within HGI48_RS07635at 1629.798 kb on + strand, within HGI48_RS07635at 1629.799 kb on - strand, within HGI48_RS07635at 1629.799 kb on - strand, within HGI48_RS07635at 1629.802 kb on + strand, within HGI48_RS07635at 1629.802 kb on + strand, within HGI48_RS07635at 1629.802 kb on + strand, within HGI48_RS07635at 1629.802 kb on + strandat 1629.802 kb on + strandat 1629.802 kb on + strand, within HGI48_RS07635at 1629.803 kb on - strand, within HGI48_RS07635at 1629.803 kb on - strand, within HGI48_RS07635at 1629.803 kb on - strand, within HGI48_RS07635at 1629.803 kb on - strand, within HGI48_RS07635at 1629.803 kb on - strand, within HGI48_RS07635at 1629.803 kb on - strand, within HGI48_RS07635at 1629.803 kb on - strand, within HGI48_RS07635at 1629.985 kb on - strandat 1629.985 kb on - strand, within HGI48_RS07635at 1630.069 kb on - strand, within HGI48_RS07635at 1630.069 kb on - strand, within HGI48_RS07635at 1630.301 kb on + strandat 1630.320 kb on + strand, within HGI48_RS07635at 1630.320 kb on + strand, within HGI48_RS07635at 1630.320 kb on + strand, within HGI48_RS07635at 1630.320 kb on + strand, within HGI48_RS07635at 1630.321 kb on - strand, within HGI48_RS07635at 1630.321 kb on - strand, within HGI48_RS07635at 1630.321 kb on - strand, within HGI48_RS07635at 1630.321 kb on - strand, within HGI48_RS07635at 1630.321 kb on - strandat 1630.431 kb on - strand, within HGI48_RS07635at 1630.492 kb on - strand, within HGI48_RS07635at 1630.881 kb on + strandat 1630.881 kb on + strandat 1630.881 kb on + strandat 1630.881 kb on + strandat 1630.884 kb on + strandat 1630.884 kb on + strandat 1630.937 kb on - strandat 1630.937 kb on - strandat 1630.937 kb on - strandat 1630.975 kb on + strandat 1630.975 kb on + strandat 1631.022 kb on - strandat 1631.160 kb on + strand, within HGI48_RS07640at 1631.209 kb on + strand, within HGI48_RS07640at 1631.209 kb on + strand, within HGI48_RS07640at 1631.210 kb on - strand, within HGI48_RS07640at 1631.243 kb on + strand, within HGI48_RS07640at 1631.243 kb on + strand, within HGI48_RS07640at 1631.243 kb on + strand, within HGI48_RS07640at 1631.243 kb on + strand, within HGI48_RS07640at 1631.244 kb on - strandat 1631.244 kb on - strandat 1631.244 kb on - strandat 1631.244 kb on - strand, within HGI48_RS07640at 1631.277 kb on + strand, within HGI48_RS07640at 1631.303 kb on + strand, within HGI48_RS07640at 1631.348 kb on + strand, within HGI48_RS07640at 1631.349 kb on - strand, within HGI48_RS07640at 1631.385 kb on - strandat 1631.445 kb on + strand, within HGI48_RS07640at 1631.445 kb on + strand, within HGI48_RS07640at 1631.445 kb on + strand, within HGI48_RS07640at 1631.446 kb on - strand, within HGI48_RS07640at 1631.446 kb on - strand, within HGI48_RS07640at 1631.446 kb on - strand, within HGI48_RS07640at 1631.446 kb on - strandat 1631.648 kb on + strand, within HGI48_RS07640at 1631.649 kb on - strand, within HGI48_RS07640at 1631.649 kb on - strand, within HGI48_RS07640at 1631.649 kb on - strand, within HGI48_RS07640at 1631.649 kb on - strand, within HGI48_RS07640at 1631.649 kb on - strand, within HGI48_RS07640at 1631.672 kb on + strandat 1631.672 kb on + strand, within HGI48_RS07640at 1631.672 kb on + strand, within HGI48_RS07640at 1631.673 kb on - strand, within HGI48_RS07640at 1631.708 kb on - strand, within HGI48_RS07640at 1631.708 kb on - strand, within HGI48_RS07640at 1631.737 kb on + strand, within HGI48_RS07640

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,627,810 + HGI48_RS07630 0.22 -1.4
1,627,820 - HGI48_RS07630 0.23 -0.4
1,627,991 + HGI48_RS07630 0.39 -0.5
1,628,411 + HGI48_RS07630 0.80 -0.1
1,628,411 + +0.6
1,628,411 + HGI48_RS07630 0.80 -0.7
1,628,412 - HGI48_RS07630 0.80 +0.2
1,628,437 - HGI48_RS07630 0.83 -1.4
1,628,439 + HGI48_RS07630 0.83 -0.4
1,628,439 + HGI48_RS07630 0.83 -0.0
1,628,440 - HGI48_RS07630 0.83 -0.4
1,628,440 - HGI48_RS07630 0.83 -0.2
1,628,440 - HGI48_RS07630 0.83 -0.2
1,628,440 - HGI48_RS07630 0.83 -2.0
1,628,721 + +0.6
1,628,721 + -0.0
1,628,721 + -1.7
1,628,722 - -0.2
1,628,722 - -0.2
1,628,722 - -0.5
1,628,722 - -0.0
1,628,828 - -0.4
1,628,828 - -1.7
1,628,828 - +0.0
1,628,833 - -0.1
1,628,833 - +0.2
1,629,005 + HGI48_RS07635 0.12 -0.7
1,629,006 - HGI48_RS07635 0.12 -1.4
1,629,006 - +0.6
1,629,104 - HGI48_RS07635 0.16 -0.2
1,629,104 - HGI48_RS07635 0.16 -1.3
1,629,333 + HGI48_RS07635 0.27 +0.3
1,629,397 + HGI48_RS07635 0.30 -0.2
1,629,397 + HGI48_RS07635 0.30 -1.4
1,629,397 + HGI48_RS07635 0.30 +0.3
1,629,397 + HGI48_RS07635 0.30 -2.2
1,629,397 + HGI48_RS07635 0.30 -1.0
1,629,398 - HGI48_RS07635 0.30 -0.8
1,629,398 - HGI48_RS07635 0.30 +0.8
1,629,480 + HGI48_RS07635 0.34 -0.4
1,629,480 + HGI48_RS07635 0.34 -0.4
1,629,480 + HGI48_RS07635 0.34 +0.2
1,629,480 + HGI48_RS07635 0.34 -0.6
1,629,481 - HGI48_RS07635 0.34 -0.4
1,629,524 + HGI48_RS07635 0.36 +0.6
1,629,525 - HGI48_RS07635 0.36 +0.3
1,629,537 + HGI48_RS07635 0.37 -0.0
1,629,666 + HGI48_RS07635 0.43 -1.0
1,629,666 + HGI48_RS07635 0.43 +0.6
1,629,667 - HGI48_RS07635 0.43 -0.7
1,629,667 - HGI48_RS07635 0.43 -0.7
1,629,671 + +1.2
1,629,672 - HGI48_RS07635 0.43 -2.4
1,629,688 - HGI48_RS07635 0.44 +0.2
1,629,738 - -0.0
1,629,738 - HGI48_RS07635 0.46 -2.0
1,629,738 - HGI48_RS07635 0.46 -0.6
1,629,738 - HGI48_RS07635 0.46 +0.7
1,629,798 + HGI48_RS07635 0.49 -0.3
1,629,798 + HGI48_RS07635 0.49 -2.1
1,629,799 - HGI48_RS07635 0.49 +1.4
1,629,799 - HGI48_RS07635 0.49 -1.0
1,629,802 + HGI48_RS07635 0.49 -0.7
1,629,802 + HGI48_RS07635 0.49 -0.2
1,629,802 + HGI48_RS07635 0.49 +0.9
1,629,802 + -0.0
1,629,802 + +1.3
1,629,802 + HGI48_RS07635 0.49 -1.7
1,629,803 - HGI48_RS07635 0.49 -0.0
1,629,803 - HGI48_RS07635 0.49 +0.3
1,629,803 - HGI48_RS07635 0.49 -0.3
1,629,803 - HGI48_RS07635 0.49 -1.4
1,629,803 - HGI48_RS07635 0.49 -0.5
1,629,803 - HGI48_RS07635 0.49 +0.2
1,629,803 - HGI48_RS07635 0.49 +1.2
1,629,985 - +0.6
1,629,985 - HGI48_RS07635 0.58 -0.0
1,630,069 - HGI48_RS07635 0.62 +0.2
1,630,069 - HGI48_RS07635 0.62 -1.7
1,630,301 + +1.2
1,630,320 + HGI48_RS07635 0.74 -1.7
1,630,320 + HGI48_RS07635 0.74 -3.0
1,630,320 + HGI48_RS07635 0.74 -0.3
1,630,320 + HGI48_RS07635 0.74 -0.2
1,630,321 - HGI48_RS07635 0.74 +0.3
1,630,321 - HGI48_RS07635 0.74 -0.4
1,630,321 - HGI48_RS07635 0.74 -1.7
1,630,321 - HGI48_RS07635 0.74 -2.2
1,630,321 - +1.0
1,630,431 - HGI48_RS07635 0.79 +0.2
1,630,492 - HGI48_RS07635 0.82 -1.0
1,630,881 + -1.7
1,630,881 + +1.0
1,630,881 + +0.4
1,630,881 + +1.0
1,630,884 + -1.7
1,630,884 + -0.8
1,630,937 - +0.1
1,630,937 - -1.7
1,630,937 - -1.0
1,630,975 + -1.0
1,630,975 + +0.3
1,631,022 - -1.0
1,631,160 + HGI48_RS07640 0.17 +1.4
1,631,209 + HGI48_RS07640 0.21 -0.8
1,631,209 + HGI48_RS07640 0.21 -0.2
1,631,210 - HGI48_RS07640 0.21 -2.0
1,631,243 + HGI48_RS07640 0.24 -0.0
1,631,243 + HGI48_RS07640 0.24 -0.4
1,631,243 + HGI48_RS07640 0.24 -1.4
1,631,243 + HGI48_RS07640 0.24 -1.6
1,631,244 - +2.9
1,631,244 - +0.6
1,631,244 - +1.0
1,631,244 - HGI48_RS07640 0.24 +0.8
1,631,277 + HGI48_RS07640 0.27 -0.2
1,631,303 + HGI48_RS07640 0.29 +0.2
1,631,348 + HGI48_RS07640 0.32 -0.4
1,631,349 - HGI48_RS07640 0.32 +0.6
1,631,385 - -1.0
1,631,445 + HGI48_RS07640 0.40 -0.7
1,631,445 + HGI48_RS07640 0.40 +0.2
1,631,445 + HGI48_RS07640 0.40 -0.6
1,631,446 - HGI48_RS07640 0.40 -0.2
1,631,446 - HGI48_RS07640 0.40 -2.2
1,631,446 - HGI48_RS07640 0.40 +0.0
1,631,446 - -0.0
1,631,648 + HGI48_RS07640 0.56 -0.7
1,631,649 - HGI48_RS07640 0.56 -0.6
1,631,649 - HGI48_RS07640 0.56 +0.9
1,631,649 - HGI48_RS07640 0.56 -0.2
1,631,649 - HGI48_RS07640 0.56 -1.7
1,631,649 - HGI48_RS07640 0.56 +1.5
1,631,672 + -0.4
1,631,672 + HGI48_RS07640 0.57 -0.1
1,631,672 + HGI48_RS07640 0.57 -0.4
1,631,673 - HGI48_RS07640 0.57 +1.5
1,631,708 - HGI48_RS07640 0.60 +1.1
1,631,708 - HGI48_RS07640 0.60 -1.1
1,631,737 + HGI48_RS07640 0.62 -0.4

Or see this region's nucleotide sequence