Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS06235 and HGI48_RS06240 overlap by 4 nucleotides HGI48_RS06240 and HGI48_RS06245 are separated by 15 nucleotides HGI48_RS06245 and HGI48_RS06250 are separated by 258 nucleotides HGI48_RS06250 and HGI48_RS06255 are separated by 64 nucleotides
HGI48_RS06235: HGI48_RS06235 - DNA polymerase III subunit delta, at 1,323,905 to 1,324,936
_RS06235
HGI48_RS06240: HGI48_RS06240 - LPS assembly lipoprotein LptE, at 1,324,933 to 1,325,487
_RS06240
HGI48_RS06245: HGI48_RS06245 - leucine--tRNA ligase, at 1,325,503 to 1,328,085
_RS06245
HGI48_RS06250: HGI48_RS06250 - zinc ribbon-containing protein, at 1,328,344 to 1,328,826
_RS06250
HGI48_RS06255: HGI48_RS06255 - amino acid ABC transporter ATP-binding protein, at 1,328,891 to 1,329,616
_RS06255
Position (kb)
1325
1326
1327
1328
1329 Strain fitness (log2 ratio)
-2
-1
0
1 at 1328.162 kb on - strand at 1328.162 kb on - strand at 1328.169 kb on - strand at 1328.213 kb on + strand at 1328.213 kb on + strand at 1328.291 kb on + strand at 1328.291 kb on + strand at 1328.291 kb on + strand at 1328.291 kb on + strand at 1328.291 kb on + strand at 1328.297 kb on - strand at 1328.306 kb on - strand at 1328.362 kb on + strand at 1328.363 kb on - strand at 1328.495 kb on + strand, within HGI48_RS06250 at 1328.496 kb on - strand at 1328.659 kb on - strand, within HGI48_RS06250 at 1328.681 kb on + strand, within HGI48_RS06250 at 1328.681 kb on + strand, within HGI48_RS06250 at 1328.681 kb on + strand, within HGI48_RS06250 at 1328.682 kb on - strand, within HGI48_RS06250 at 1328.682 kb on - strand, within HGI48_RS06250 at 1328.683 kb on + strand, within HGI48_RS06250 at 1328.683 kb on + strand, within HGI48_RS06250 at 1328.683 kb on + strand, within HGI48_RS06250 at 1328.684 kb on - strand at 1328.684 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,328,162 - -1.3 1,328,162 - -0.5 1,328,169 - -2.5 1,328,213 + -0.6 1,328,213 + -0.0 1,328,291 + -0.9 1,328,291 + -1.6 1,328,291 + -0.6 1,328,291 + -0.1 1,328,291 + -0.5 1,328,297 - -1.1 1,328,306 - -1.1 1,328,362 + -2.6 1,328,363 - +0.2 1,328,495 + HGI48_RS06250 0.31 +0.0 1,328,496 - -0.3 1,328,659 - HGI48_RS06250 0.65 -0.3 1,328,681 + HGI48_RS06250 0.70 -0.0 1,328,681 + HGI48_RS06250 0.70 -2.3 1,328,681 + HGI48_RS06250 0.70 -1.1 1,328,682 - HGI48_RS06250 0.70 -1.3 1,328,682 - HGI48_RS06250 0.70 +0.4 1,328,683 + HGI48_RS06250 0.70 +0.3 1,328,683 + HGI48_RS06250 0.70 -1.6 1,328,683 + HGI48_RS06250 0.70 -0.3 1,328,684 - -0.9 1,328,684 - -0.9
Or see this region's nucleotide sequence