Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS06150 and HGI48_RS06155 overlap by 20 nucleotides HGI48_RS06155 and HGI48_RS06160 are separated by 231 nucleotides HGI48_RS06160 and HGI48_RS06165 are separated by 547 nucleotides
HGI48_RS06150: HGI48_RS06150 - succinyl-diaminopimelate desuccinylase, at 1,309,839 to 1,310,966
_RS06150
HGI48_RS06155: HGI48_RS06155 - ArsC family reductase, at 1,310,947 to 1,311,330
_RS06155
HGI48_RS06160: HGI48_RS06160 - protein YpfM, at 1,311,562 to 1,311,621
_RS06160
HGI48_RS06165: HGI48_RS06165 - transcription antiterminator/RNA stability regulator CspE, at 1,312,169 to 1,312,378
_RS06165
Position (kb)
1310
1311
1312 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1310.996 kb on + strand, within HGI48_RS06155 at 1310.997 kb on - strand, within HGI48_RS06155 at 1311.081 kb on + strand, within HGI48_RS06155 at 1311.081 kb on + strand at 1311.082 kb on - strand, within HGI48_RS06155 at 1311.082 kb on - strand, within HGI48_RS06155 at 1311.082 kb on - strand, within HGI48_RS06155 at 1311.139 kb on - strand, within HGI48_RS06155 at 1311.376 kb on - strand at 1311.383 kb on - strand at 1311.383 kb on - strand at 1311.517 kb on + strand at 1311.517 kb on + strand at 1311.518 kb on - strand at 1311.519 kb on + strand at 1311.520 kb on - strand at 1311.523 kb on - strand at 1311.555 kb on + strand at 1311.616 kb on - strand at 1311.619 kb on + strand at 1311.620 kb on - strand at 1311.636 kb on - strand at 1311.636 kb on - strand at 1311.640 kb on + strand at 1311.640 kb on + strand at 1311.641 kb on - strand at 1311.664 kb on + strand at 1311.665 kb on - strand at 1311.688 kb on - strand at 1311.690 kb on + strand at 1311.798 kb on + strand at 1311.955 kb on + strand at 1312.004 kb on + strand at 1312.008 kb on - strand at 1312.016 kb on - strand at 1312.058 kb on + strand at 1312.180 kb on + strand at 1312.181 kb on - strand at 1312.181 kb on - strand at 1312.254 kb on + strand, within HGI48_RS06165
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,310,996 + HGI48_RS06155 0.13 +0.8 1,310,997 - HGI48_RS06155 0.13 -0.6 1,311,081 + HGI48_RS06155 0.35 -1.0 1,311,081 + +3.0 1,311,082 - HGI48_RS06155 0.35 -1.3 1,311,082 - HGI48_RS06155 0.35 +0.5 1,311,082 - HGI48_RS06155 0.35 +1.4 1,311,139 - HGI48_RS06155 0.50 -0.1 1,311,376 - +0.2 1,311,383 - -1.0 1,311,383 - -2.1 1,311,517 + +0.1 1,311,517 + -0.9 1,311,518 - -0.6 1,311,519 + -0.4 1,311,520 - -0.3 1,311,523 - -0.8 1,311,555 + -0.8 1,311,616 - -0.2 1,311,619 + -0.7 1,311,620 - -2.5 1,311,636 - +0.4 1,311,636 - -1.5 1,311,640 + +1.7 1,311,640 + +0.7 1,311,641 - -0.7 1,311,664 + -0.9 1,311,665 - -0.9 1,311,688 - +0.7 1,311,690 + +0.2 1,311,798 + +0.4 1,311,955 + +0.1 1,312,004 + -1.9 1,312,008 - +0.1 1,312,016 - +0.5 1,312,058 + -0.4 1,312,180 + -0.3 1,312,181 - -2.5 1,312,181 - +0.1 1,312,254 + HGI48_RS06165 0.40 +1.0
Or see this region's nucleotide sequence