Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05895

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,247,888	-		HGI48_RS05890	0.73	+1.0
1,248,051	+		HGI48_RS05890	0.78	+0.7
1,248,051	+		HGI48_RS05890	0.78	+0.9
1,248,051	+		HGI48_RS05890	0.78	-1.6
1,248,054	+		HGI48_RS05890	0.79	-0.4
1,248,054	+				+0.7
1,248,054	+		HGI48_RS05890	0.79	-0.1
1,248,087	+				+0.7
1,248,090	-		HGI48_RS05890	0.80	+0.4
1,248,092	+		HGI48_RS05890	0.80	+1.4
1,248,108	-		HGI48_RS05890	0.80	+0.7
1,248,116	+				+0.7
1,248,116	+		HGI48_RS05890	0.81	-0.1
1,248,117	-		HGI48_RS05890	0.81	-0.3
1,248,117	-		HGI48_RS05890	0.81	+0.8
1,248,117	-		HGI48_RS05890	0.81	-0.4
1,248,297	+		HGI48_RS05890	0.87	+0.6
1,248,298	-		HGI48_RS05890	0.87	+0.1
1,248,545	-				-0.6
1,248,545	-				-1.5
1,248,649	-				+0.7
1,248,662	+				+0.1
1,248,662	+				-0.9
1,248,662	+				+1.1
1,248,662	+				-1.1
1,248,662	+				-0.5
1,248,662	+				-0.6
1,248,663	-				-0.9
1,248,663	-				+2.0
1,248,663	-				+0.1
1,248,665	+				-0.3
1,248,665	+				-1.3
1,248,666	-				-0.3
1,248,666	-				+1.1
1,248,666	-				+0.9
1,248,669	-				+3.3
1,248,732	+				-0.0
1,248,732	+				-0.3
1,248,732	+				-1.3
1,248,791	+				-0.6
1,248,792	-				-0.1
1,248,843	+				+1.1
1,248,900	+		HGI48_RS05895	0.27	-0.4
1,248,900	+		HGI48_RS05895	0.27	+0.2
1,248,914	+		HGI48_RS05895	0.30	-1.9
1,249,079	+				+0.1
1,249,213	+				-0.0
1,249,213	+				-0.3
1,249,213	+				+0.3
1,249,213	+				+1.1
1,249,213	+				-1.2
1,249,214	-				+0.1
1,249,214	-				-0.3
1,249,214	-				-0.6
1,249,214	-				-0.6
1,249,214	-				-0.2
1,249,214	-				+0.1
1,249,214	-				-0.0
1,249,215	+				-0.5
1,249,215	+				+1.2
1,249,215	+				+1.2
1,249,215	+				+0.1
1,249,215	+				+1.5
1,249,215	+				-0.9
1,249,215	+				+1.4
1,249,215	+				-0.4
1,249,215	+				+0.3
1,249,215	+				+0.1
1,249,215	+				-0.6
1,249,216	-				-0.9
1,249,216	-				+0.7
1,249,216	-				-1.0
1,249,232	+				-1.6
1,249,280	+				-1.6
1,249,280	+				+0.5
1,249,281	-				-2.5
1,249,333	+				+0.5
1,249,333	+				+0.4
1,249,334	-				+0.7
1,249,459	+		HGI48_RS05900	0.34	+0.1
1,249,459	+				+2.3
1,249,459	+		HGI48_RS05900	0.34	+1.0
1,249,459	+		HGI48_RS05900	0.34	-0.3
1,249,459	+				+2.0
1,249,459	+		HGI48_RS05900	0.34	+0.6
1,249,459	+		HGI48_RS05900	0.34	-0.8
1,249,459	+		HGI48_RS05900	0.34	-1.3
1,249,460	-		HGI48_RS05900	0.34	-1.0
1,249,460	-		HGI48_RS05900	0.34	+0.2
1,249,460	-		HGI48_RS05900	0.34	+0.4
1,249,460	-				+1.1
1,249,460	-				-0.3
1,249,460	-				+2.3
1,249,460	-		HGI48_RS05900	0.34	+0.3
1,249,460	-		HGI48_RS05900	0.34	-0.3
1,249,460	-		HGI48_RS05900	0.34	+0.9
1,249,460	-		HGI48_RS05900	0.34	-0.6
1,249,462	+		HGI48_RS05900	0.34	+0.3
1,249,462	+		HGI48_RS05900	0.34	-1.6
1,249,462	+		HGI48_RS05900	0.34	+0.3
1,249,463	-		HGI48_RS05900	0.35	-0.8
1,249,463	-		HGI48_RS05900	0.35	-0.7
1,249,463	-		HGI48_RS05900	0.35	-2.6
1,249,463	-		HGI48_RS05900	0.35	-1.5
1,249,760	+				-0.1
1,249,760	+				-0.3
1,249,760	+				+0.5
1,249,760	+				-2.5
1,249,761	-				-0.1
1,249,761	-				-2.5
1,249,761	-				-0.9
1,249,788	+				-1.1
1,249,898	+		HGI48_RS05905	0.15	+0.7
1,249,898	+		HGI48_RS05905	0.15	-1.2
1,249,898	+				+0.7
1,249,916	+		HGI48_RS05905	0.17	+1.2
1,249,916	+		HGI48_RS05905	0.17	-0.3
1,249,916	+		HGI48_RS05905	0.17	-0.9
1,249,917	-		HGI48_RS05905	0.17	+0.5
1,249,932	+		HGI48_RS05905	0.19	-0.5