Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS05845 and HGI48_RS05850 are separated by 255 nucleotides HGI48_RS05850 and HGI48_RS05855 are separated by 243 nucleotides
HGI48_RS05845: HGI48_RS05845 - molecular chaperone HtpG, at 1,232,634 to 1,234,517
_RS05845
HGI48_RS05850: HGI48_RS05850 - adenylate kinase, at 1,234,773 to 1,235,420
_RS05850
HGI48_RS05855: HGI48_RS05855 - ferrochelatase, at 1,235,664 to 1,236,626
_RS05855
Position (kb) 1234
1235
1236 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1233.897 kb on + strand, within HGI48_RS05845 at 1233.897 kb on + strand, within HGI48_RS05845 at 1233.897 kb on + strand at 1233.897 kb on + strand, within HGI48_RS05845 at 1233.898 kb on - strand, within HGI48_RS05845 at 1233.898 kb on - strand, within HGI48_RS05845 at 1233.898 kb on - strand, within HGI48_RS05845 at 1233.898 kb on - strand, within HGI48_RS05845 at 1233.898 kb on - strand, within HGI48_RS05845 at 1233.903 kb on - strand, within HGI48_RS05845 at 1233.903 kb on - strand, within HGI48_RS05845 at 1233.933 kb on + strand, within HGI48_RS05845 at 1233.933 kb on + strand at 1233.934 kb on - strand, within HGI48_RS05845 at 1233.934 kb on - strand, within HGI48_RS05845 at 1233.934 kb on - strand, within HGI48_RS05845 at 1233.934 kb on - strand, within HGI48_RS05845 at 1233.934 kb on - strand, within HGI48_RS05845 at 1233.936 kb on + strand at 1233.936 kb on + strand, within HGI48_RS05845 at 1233.936 kb on + strand, within HGI48_RS05845 at 1233.936 kb on + strand, within HGI48_RS05845 at 1233.937 kb on - strand, within HGI48_RS05845 at 1233.937 kb on - strand, within HGI48_RS05845 at 1233.954 kb on + strand, within HGI48_RS05845 at 1233.954 kb on + strand, within HGI48_RS05845 at 1233.955 kb on - strand, within HGI48_RS05845 at 1233.955 kb on - strand at 1233.955 kb on - strand, within HGI48_RS05845 at 1233.955 kb on - strand, within HGI48_RS05845 at 1233.971 kb on + strand, within HGI48_RS05845 at 1233.972 kb on - strand, within HGI48_RS05845 at 1233.972 kb on - strand, within HGI48_RS05845 at 1234.053 kb on + strand, within HGI48_RS05845 at 1234.054 kb on - strand, within HGI48_RS05845 at 1234.054 kb on - strand, within HGI48_RS05845 at 1234.054 kb on - strand, within HGI48_RS05845 at 1234.054 kb on - strand, within HGI48_RS05845 at 1234.054 kb on - strand, within HGI48_RS05845 at 1234.054 kb on - strand, within HGI48_RS05845 at 1234.054 kb on - strand, within HGI48_RS05845 at 1234.073 kb on + strand, within HGI48_RS05845 at 1234.073 kb on + strand, within HGI48_RS05845 at 1234.073 kb on + strand, within HGI48_RS05845 at 1234.073 kb on + strand, within HGI48_RS05845 at 1234.339 kb on - strand at 1234.505 kb on - strand at 1234.541 kb on + strand at 1234.541 kb on + strand at 1234.542 kb on - strand at 1234.610 kb on + strand at 1234.610 kb on + strand at 1235.494 kb on - strand at 1235.512 kb on + strand at 1235.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,233,897 + HGI48_RS05845 0.67 -1.0 1,233,897 + HGI48_RS05845 0.67 -0.6 1,233,897 + -0.9 1,233,897 + HGI48_RS05845 0.67 -1.3 1,233,898 - HGI48_RS05845 0.67 +0.0 1,233,898 - HGI48_RS05845 0.67 +1.1 1,233,898 - HGI48_RS05845 0.67 -0.7 1,233,898 - HGI48_RS05845 0.67 +0.5 1,233,898 - HGI48_RS05845 0.67 -2.1 1,233,903 - HGI48_RS05845 0.67 -2.1 1,233,903 - HGI48_RS05845 0.67 -0.1 1,233,933 + HGI48_RS05845 0.69 -0.0 1,233,933 + -0.3 1,233,934 - HGI48_RS05845 0.69 -1.3 1,233,934 - HGI48_RS05845 0.69 -1.6 1,233,934 - HGI48_RS05845 0.69 -1.9 1,233,934 - HGI48_RS05845 0.69 -0.0 1,233,934 - HGI48_RS05845 0.69 -0.9 1,233,936 + +1.9 1,233,936 + HGI48_RS05845 0.69 -1.6 1,233,936 + HGI48_RS05845 0.69 -2.1 1,233,936 + HGI48_RS05845 0.69 -1.4 1,233,937 - HGI48_RS05845 0.69 -2.3 1,233,937 - HGI48_RS05845 0.69 -2.0 1,233,954 + HGI48_RS05845 0.70 -0.7 1,233,954 + HGI48_RS05845 0.70 -1.0 1,233,955 - HGI48_RS05845 0.70 -0.7 1,233,955 - +0.7 1,233,955 - HGI48_RS05845 0.70 +0.3 1,233,955 - HGI48_RS05845 0.70 -0.1 1,233,971 + HGI48_RS05845 0.71 -2.1 1,233,972 - HGI48_RS05845 0.71 -1.2 1,233,972 - HGI48_RS05845 0.71 +0.9 1,234,053 + HGI48_RS05845 0.75 -0.6 1,234,054 - HGI48_RS05845 0.75 +0.4 1,234,054 - HGI48_RS05845 0.75 -0.6 1,234,054 - HGI48_RS05845 0.75 +1.3 1,234,054 - HGI48_RS05845 0.75 +0.5 1,234,054 - HGI48_RS05845 0.75 -0.9 1,234,054 - HGI48_RS05845 0.75 -1.4 1,234,054 - HGI48_RS05845 0.75 -0.0 1,234,073 + HGI48_RS05845 0.76 -1.1 1,234,073 + HGI48_RS05845 0.76 -1.4 1,234,073 + HGI48_RS05845 0.76 +0.2 1,234,073 + HGI48_RS05845 0.76 -0.9 1,234,339 - -0.3 1,234,505 - -1.6 1,234,541 + -0.5 1,234,541 + +1.1 1,234,542 - +1.3 1,234,610 + -0.1 1,234,610 + +2.1 1,235,494 - +0.7 1,235,512 + -0.9 1,235,513 - +0.1
Or see this region's nucleotide sequence