Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05375

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,126,453	+		HGI48_RS05370	0.13	+0.4
1,126,527	+		HGI48_RS05370	0.21	-0.3
1,126,635	+		HGI48_RS05370	0.31	+0.8
1,126,635	+		HGI48_RS05370	0.31	-0.5
1,126,635	+		HGI48_RS05370	0.31	-0.5
1,126,636	-		HGI48_RS05370	0.31	-0.6
1,126,636	-		HGI48_RS05370	0.31	-1.6
1,126,636	-				+1.5
1,126,681	+		HGI48_RS05370	0.35	-0.6
1,126,698	-		HGI48_RS05370	0.37	-0.2
1,126,701	+		HGI48_RS05370	0.37	-1.8
1,126,701	+				-0.8
1,126,702	-				+0.8
1,126,745	+		HGI48_RS05370	0.42	-0.5
1,126,745	+				-0.2
1,126,754	-		HGI48_RS05370	0.43	-1.8
1,126,802	+		HGI48_RS05370	0.47	+1.3
1,126,802	+		HGI48_RS05370	0.47	-0.6
1,126,802	+		HGI48_RS05370	0.47	-0.8
1,126,802	+		HGI48_RS05370	0.47	+0.3
1,126,803	-		HGI48_RS05370	0.47	+0.8
1,126,803	-		HGI48_RS05370	0.47	+0.1
1,126,816	+		HGI48_RS05370	0.49	-0.1
1,126,816	+		HGI48_RS05370	0.49	+0.8
1,126,816	+				+0.8
1,126,817	-		HGI48_RS05370	0.49	+0.0
1,126,817	-		HGI48_RS05370	0.49	-0.4
1,126,906	-		HGI48_RS05370	0.57	-0.9
1,126,934	+		HGI48_RS05370	0.60	+0.1
1,126,934	+		HGI48_RS05370	0.60	+0.2
1,126,934	+		HGI48_RS05370	0.60	-0.2
1,126,934	+		HGI48_RS05370	0.60	-0.7
1,126,934	+		HGI48_RS05370	0.60	+0.4
1,126,935	-				-0.2
1,126,935	-		HGI48_RS05370	0.60	+0.5
1,126,935	-		HGI48_RS05370	0.60	+1.4
1,126,937	-		HGI48_RS05370	0.60	-0.4
1,127,129	-		HGI48_RS05370	0.79	+0.5
1,127,163	+		HGI48_RS05370	0.82	-0.2
1,127,222	+		HGI48_RS05370	0.88	-0.8
1,127,222	+		HGI48_RS05370	0.88	-0.4
1,127,223	-		HGI48_RS05370	0.88	+0.5
1,127,258	+				-0.8
1,127,294	+				-1.6
1,127,294	+				+1.5
1,127,295	-				+0.8
1,127,295	-				-0.6
1,127,299	+				-0.7
1,127,299	+				-0.7
1,127,299	+				-0.5
1,127,299	+				-0.1
1,127,300	-				-1.8
1,127,300	-				+1.1
1,127,302	+				-0.2
1,127,302	+				+0.2
1,127,302	+				-2.8
1,127,310	+				-0.2
1,127,311	-				-0.5
1,127,342	+				+0.5
1,127,343	-				-1.4
1,127,347	+				-0.4
1,127,347	+				+0.9
1,127,347	+				+0.2
1,127,348	-				-0.5
1,127,348	-				+0.2
1,127,348	-				-1.8
1,127,360	-				-1.2
1,127,387	-				+0.3
1,127,398	+				-1.2
1,127,445	+		HGI48_RS05375	0.14	-0.2
1,127,445	+		HGI48_RS05375	0.14	-0.1
1,127,446	-		HGI48_RS05375	0.14	+0.6
1,127,545	+		HGI48_RS05375	0.28	-0.6
1,127,567	+		HGI48_RS05375	0.31	-0.2
1,127,612	+		HGI48_RS05375	0.37	+0.2
1,127,613	-		HGI48_RS05375	0.37	-0.7
1,127,745	+				+1.2
1,127,746	-		HGI48_RS05375	0.56	+1.6
1,127,746	-				-0.8
1,127,747	+		HGI48_RS05375	0.56	+0.3
1,127,786	-		HGI48_RS05375	0.62	+0.2
1,127,840	+				+0.8
1,127,840	+		HGI48_RS05375	0.69	+0.5
1,127,840	+		HGI48_RS05375	0.69	-1.1
1,127,840	+		HGI48_RS05375	0.69	-0.1
1,127,840	+		HGI48_RS05375	0.69	+0.6
1,127,841	-		HGI48_RS05375	0.70	-0.1
1,127,841	-		HGI48_RS05375	0.70	-2.5
1,127,841	-		HGI48_RS05375	0.70	-0.2
1,127,841	-		HGI48_RS05375	0.70	-0.3
1,127,841	-		HGI48_RS05375	0.70	+0.0
1,127,841	-				-0.8
1,127,841	-		HGI48_RS05375	0.70	-0.9
1,127,900	+		HGI48_RS05375	0.78	+0.3
1,127,900	+		HGI48_RS05375	0.78	-0.5
1,127,916	-		HGI48_RS05375	0.80	+0.6
1,128,053	+				-0.6
1,128,053	+				+0.8
1,128,054	-				-1.9
1,128,056	+				-2.6
1,128,076	+				-1.2
1,128,090	+				-2.1
1,128,133	+				-1.0
1,128,208	-				+0.2
1,128,227	+				-0.2
1,128,249	+				-0.3
1,128,250	-				+0.8
1,128,283	+				+0.2
1,128,345	-				+0.8
1,128,410	+				-1.8
1,128,411	-				+0.8
1,128,499	-		HGI48_RS05380	0.11	-1.2
1,128,508	-		HGI48_RS05380	0.11	+0.0
1,128,508	-		HGI48_RS05380	0.11	+0.8
1,128,532	+		HGI48_RS05380	0.13	+0.5
1,128,592	+		HGI48_RS05380	0.16	+1.1
1,128,592	+		HGI48_RS05380	0.16	-0.3
1,128,593	-		HGI48_RS05380	0.16	-1.6
1,128,593	-		HGI48_RS05380	0.16	-0.5
1,128,593	-		HGI48_RS05380	0.16	+0.5
1,128,639	+		HGI48_RS05380	0.19	+1.0
1,128,645	+		HGI48_RS05380	0.19	+0.2
1,128,680	-		HGI48_RS05380	0.21	-1.1
1,128,681	+		HGI48_RS05380	0.21	-1.2
1,128,682	-		HGI48_RS05380	0.21	-0.4
1,128,682	-				-0.2
1,128,682	-		HGI48_RS05380	0.21	-0.2
1,128,692	+		HGI48_RS05380	0.22	+0.0
1,128,715	+		HGI48_RS05380	0.23	-0.4
1,128,715	+		HGI48_RS05380	0.23	-0.4
1,128,716	-		HGI48_RS05380	0.23	+0.6
1,128,716	-		HGI48_RS05380	0.23	+1.1
1,128,717	+		HGI48_RS05380	0.23	-0.0
1,128,886	+		HGI48_RS05380	0.33	+0.4
1,128,886	+		HGI48_RS05380	0.33	+0.5
1,128,887	-		HGI48_RS05380	0.33	+0.6
1,128,892	+		HGI48_RS05380	0.33	-1.8
1,128,893	-		HGI48_RS05380	0.33	+0.3
1,128,930	+				+0.2
1,128,931	-		HGI48_RS05380	0.35	+0.3
1,128,931	-		HGI48_RS05380	0.35	-0.2
1,128,940	+				+0.8
1,128,979	+		HGI48_RS05380	0.38	+0.1
1,128,980	-		HGI48_RS05380	0.38	-0.4
1,129,030	-		HGI48_RS05380	0.41	-2.6
1,129,051	+		HGI48_RS05380	0.42	+0.4
1,129,051	+				+0.8
1,129,051	+		HGI48_RS05380	0.42	-1.1
1,129,052	-		HGI48_RS05380	0.42	+0.1