Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS05190 and HGI48_RS05195 are separated by 12 nucleotides HGI48_RS05195 and HGI48_RS05200 are separated by 204 nucleotides HGI48_RS05200 and HGI48_RS05205 overlap by 11 nucleotides
HGI48_RS05190: HGI48_RS05190 - DNA polymerase III subunit alpha, at 1,087,610 to 1,091,092
_RS05190
HGI48_RS05195: HGI48_RS05195 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 1,091,105 to 1,092,064
_RS05195
HGI48_RS05200: HGI48_RS05200 - VOC family protein, at 1,092,269 to 1,092,658
_RS05200
HGI48_RS05205: HGI48_RS05205 - tRNA lysidine(34) synthetase TilS, at 1,092,648 to 1,093,976
_RS05205
Position (kb) 1091
1092
1093 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1092.140 kb on + strand at 1092.185 kb on + strand at 1092.268 kb on + strand at 1092.268 kb on + strand at 1092.268 kb on + strand at 1092.304 kb on + strand at 1092.317 kb on + strand, within HGI48_RS05200 at 1092.338 kb on + strand, within HGI48_RS05200 at 1092.338 kb on + strand, within HGI48_RS05200 at 1092.590 kb on + strand at 1092.590 kb on + strand at 1092.647 kb on + strand at 1092.648 kb on - strand at 1092.659 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,092,140 + +0.8 1,092,185 + -1.0 1,092,268 + -0.1 1,092,268 + -0.2 1,092,268 + -1.8 1,092,304 + -1.6 1,092,317 + HGI48_RS05200 0.12 -0.4 1,092,338 + HGI48_RS05200 0.18 -0.1 1,092,338 + HGI48_RS05200 0.18 -0.3 1,092,590 + +2.0 1,092,590 + +1.4 1,092,647 + +0.2 1,092,648 - -0.8 1,092,659 + +0.2
Or see this region's nucleotide sequence