Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04610

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04605 and HGI48_RS04610 are separated by 121 nucleotidesHGI48_RS04610 and HGI48_RS04615 overlap by 26 nucleotidesHGI48_RS04615 and HGI48_RS04620 are separated by 5 nucleotides HGI48_RS04605: HGI48_RS04605 - tartrate dehydrogenase, at 964,973 to 966,058 _RS04605 HGI48_RS04610: HGI48_RS04610 - LysR family transcriptional regulator, at 966,180 to 967,136 _RS04610 HGI48_RS04615: HGI48_RS04615 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 967,111 to 967,953 _RS04615 HGI48_RS04620: HGI48_RS04620 - queuosine precursor transporter, at 967,959 to 968,834 _RS04620 Position (kb) 966 967 968Strain fitness (log2 ratio) -2 -1 0 1 2 3at 965.363 kb on + strandat 965.364 kb on - strand, within HGI48_RS04605at 965.394 kb on + strand, within HGI48_RS04605at 965.394 kb on + strand, within HGI48_RS04605at 965.394 kb on + strandat 965.394 kb on + strand, within HGI48_RS04605at 965.394 kb on + strand, within HGI48_RS04605at 965.394 kb on + strand, within HGI48_RS04605at 965.394 kb on + strand, within HGI48_RS04605at 965.394 kb on + strand, within HGI48_RS04605at 965.395 kb on - strand, within HGI48_RS04605at 965.395 kb on - strand, within HGI48_RS04605at 965.395 kb on - strand, within HGI48_RS04605at 965.637 kb on + strand, within HGI48_RS04605at 965.637 kb on + strand, within HGI48_RS04605at 965.667 kb on + strand, within HGI48_RS04605at 965.667 kb on + strand, within HGI48_RS04605at 965.668 kb on - strand, within HGI48_RS04605at 965.668 kb on - strand, within HGI48_RS04605at 965.748 kb on + strand, within HGI48_RS04605at 965.748 kb on + strand, within HGI48_RS04605at 965.749 kb on - strand, within HGI48_RS04605at 965.749 kb on - strand, within HGI48_RS04605at 965.839 kb on - strand, within HGI48_RS04605at 965.839 kb on - strand, within HGI48_RS04605at 965.839 kb on - strand, within HGI48_RS04605at 965.904 kb on + strand, within HGI48_RS04605at 966.111 kb on + strandat 966.112 kb on - strandat 966.112 kb on - strandat 966.112 kb on - strandat 966.115 kb on + strandat 966.116 kb on - strandat 966.116 kb on - strandat 966.316 kb on + strand, within HGI48_RS04610at 966.316 kb on + strand, within HGI48_RS04610at 966.316 kb on + strand, within HGI48_RS04610at 966.316 kb on + strand, within HGI48_RS04610at 966.333 kb on - strand, within HGI48_RS04610at 966.333 kb on - strand, within HGI48_RS04610at 966.372 kb on + strand, within HGI48_RS04610at 966.372 kb on + strand, within HGI48_RS04610at 966.372 kb on + strand, within HGI48_RS04610at 966.372 kb on + strand, within HGI48_RS04610at 966.372 kb on + strand, within HGI48_RS04610at 966.372 kb on + strand, within HGI48_RS04610at 966.373 kb on - strand, within HGI48_RS04610at 966.373 kb on - strand, within HGI48_RS04610at 966.373 kb on - strand, within HGI48_RS04610at 966.373 kb on - strand, within HGI48_RS04610at 966.373 kb on - strand, within HGI48_RS04610at 966.373 kb on - strandat 966.427 kb on + strandat 966.428 kb on - strandat 966.497 kb on + strandat 966.498 kb on - strand, within HGI48_RS04610at 966.560 kb on + strand, within HGI48_RS04610at 966.561 kb on - strand, within HGI48_RS04610at 966.691 kb on - strand, within HGI48_RS04610at 966.763 kb on - strand, within HGI48_RS04610at 966.792 kb on + strand, within HGI48_RS04610at 966.813 kb on - strand, within HGI48_RS04610at 966.960 kb on + strand, within HGI48_RS04610at 966.960 kb on + strandat 966.960 kb on + strand, within HGI48_RS04610at 966.960 kb on + strand, within HGI48_RS04610at 966.961 kb on - strand, within HGI48_RS04610at 966.961 kb on - strand, within HGI48_RS04610at 966.961 kb on - strand, within HGI48_RS04610at 966.961 kb on - strand, within HGI48_RS04610at 966.980 kb on + strand, within HGI48_RS04610at 966.984 kb on + strand, within HGI48_RS04610at 966.994 kb on - strand, within HGI48_RS04610at 966.994 kb on - strand, within HGI48_RS04610at 966.994 kb on - strand, within HGI48_RS04610at 967.112 kb on + strandat 967.194 kb on + strandat 967.195 kb on - strandat 967.196 kb on + strand, within HGI48_RS04615at 967.197 kb on - strand, within HGI48_RS04615at 967.197 kb on - strand, within HGI48_RS04615at 967.233 kb on - strand, within HGI48_RS04615at 967.233 kb on - strand, within HGI48_RS04615at 967.248 kb on + strand, within HGI48_RS04615at 967.307 kb on + strand, within HGI48_RS04615at 967.346 kb on + strand, within HGI48_RS04615at 967.346 kb on + strand, within HGI48_RS04615at 967.379 kb on + strand, within HGI48_RS04615at 967.379 kb on + strand, within HGI48_RS04615at 967.380 kb on - strand, within HGI48_RS04615at 967.467 kb on - strand, within HGI48_RS04615at 967.630 kb on + strand, within HGI48_RS04615at 967.671 kb on + strand, within HGI48_RS04615at 967.672 kb on - strand, within HGI48_RS04615at 967.676 kb on + strand, within HGI48_RS04615at 967.677 kb on - strand, within HGI48_RS04615at 967.728 kb on + strand, within HGI48_RS04615at 967.729 kb on - strand, within HGI48_RS04615at 967.729 kb on - strand, within HGI48_RS04615at 967.729 kb on - strand, within HGI48_RS04615at 967.802 kb on + strand, within HGI48_RS04615at 967.889 kb on + strandat 967.890 kb on - strandat 967.944 kb on + strandat 967.945 kb on - strandat 967.945 kb on - strandat 967.945 kb on - strandat 967.947 kb on + strandat 967.947 kb on + strandat 967.948 kb on - strandat 967.948 kb on - strandat 967.948 kb on - strandat 967.948 kb on - strandat 967.948 kb on - strandat 968.021 kb on - strandat 968.047 kb on + strand, within HGI48_RS04620at 968.048 kb on - strand, within HGI48_RS04620at 968.111 kb on + strand, within HGI48_RS04620at 968.111 kb on + strand, within HGI48_RS04620at 968.112 kb on - strand, within HGI48_RS04620at 968.112 kb on - strand, within HGI48_RS04620at 968.114 kb on - strand, within HGI48_RS04620at 968.114 kb on - strand, within HGI48_RS04620

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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965,363 + +0.8
965,364 - HGI48_RS04605 0.36 -0.4
965,394 + HGI48_RS04605 0.39 -1.8
965,394 + HGI48_RS04605 0.39 -1.1
965,394 + +0.8
965,394 + HGI48_RS04605 0.39 +0.8
965,394 + HGI48_RS04605 0.39 -1.7
965,394 + HGI48_RS04605 0.39 -0.5
965,394 + HGI48_RS04605 0.39 -1.5
965,394 + HGI48_RS04605 0.39 -0.8
965,395 - HGI48_RS04605 0.39 +0.8
965,395 - HGI48_RS04605 0.39 -0.1
965,395 - HGI48_RS04605 0.39 +0.3
965,637 + HGI48_RS04605 0.61 -2.4
965,637 + HGI48_RS04605 0.61 -0.9
965,667 + HGI48_RS04605 0.64 -0.2
965,667 + HGI48_RS04605 0.64 -1.0
965,668 - HGI48_RS04605 0.64 -0.4
965,668 - HGI48_RS04605 0.64 -2.0
965,748 + HGI48_RS04605 0.71 +0.3
965,748 + HGI48_RS04605 0.71 -0.0
965,749 - HGI48_RS04605 0.71 +0.1
965,749 - HGI48_RS04605 0.71 -0.5
965,839 - HGI48_RS04605 0.80 -0.1
965,839 - HGI48_RS04605 0.80 +0.0
965,839 - HGI48_RS04605 0.80 -0.6
965,904 + HGI48_RS04605 0.86 +0.3
966,111 + +0.1
966,112 - +0.3
966,112 - -0.4
966,112 - -1.1
966,115 + +1.3
966,116 - +0.2
966,116 - +1.8
966,316 + HGI48_RS04610 0.14 +0.3
966,316 + HGI48_RS04610 0.14 +0.2
966,316 + HGI48_RS04610 0.14 -1.5
966,316 + HGI48_RS04610 0.14 -0.3
966,333 - HGI48_RS04610 0.16 -0.2
966,333 - HGI48_RS04610 0.16 -0.8
966,372 + HGI48_RS04610 0.20 -2.2
966,372 + HGI48_RS04610 0.20 -0.2
966,372 + HGI48_RS04610 0.20 +0.2
966,372 + HGI48_RS04610 0.20 +0.7
966,372 + HGI48_RS04610 0.20 -1.2
966,372 + HGI48_RS04610 0.20 -1.4
966,373 - HGI48_RS04610 0.20 +0.2
966,373 - HGI48_RS04610 0.20 -0.1
966,373 - HGI48_RS04610 0.20 -2.2
966,373 - HGI48_RS04610 0.20 -0.8
966,373 - HGI48_RS04610 0.20 -1.2
966,373 - +3.2
966,427 + +0.8
966,428 - +0.8
966,497 + +0.8
966,498 - HGI48_RS04610 0.33 +0.5
966,560 + HGI48_RS04610 0.40 +0.4
966,561 - HGI48_RS04610 0.40 +0.3
966,691 - HGI48_RS04610 0.53 -0.0
966,763 - HGI48_RS04610 0.61 +0.3
966,792 + HGI48_RS04610 0.64 +0.5
966,813 - HGI48_RS04610 0.66 +0.5
966,960 + HGI48_RS04610 0.82 +1.1
966,960 + +1.4
966,960 + HGI48_RS04610 0.82 -1.5
966,960 + HGI48_RS04610 0.82 +0.1
966,961 - HGI48_RS04610 0.82 +0.4
966,961 - HGI48_RS04610 0.82 -0.2
966,961 - HGI48_RS04610 0.82 +0.3
966,961 - HGI48_RS04610 0.82 -0.4
966,980 + HGI48_RS04610 0.84 +1.2
966,984 + HGI48_RS04610 0.84 -1.1
966,994 - HGI48_RS04610 0.85 +1.0
966,994 - HGI48_RS04610 0.85 +0.1
966,994 - HGI48_RS04610 0.85 -0.2
967,112 + -1.0
967,194 + -0.2
967,195 - -0.8
967,196 + HGI48_RS04615 0.10 -0.1
967,197 - HGI48_RS04615 0.10 -0.3
967,197 - HGI48_RS04615 0.10 -0.2
967,233 - HGI48_RS04615 0.14 -0.3
967,233 - HGI48_RS04615 0.14 -1.2
967,248 + HGI48_RS04615 0.16 -0.2
967,307 + HGI48_RS04615 0.23 +0.5
967,346 + HGI48_RS04615 0.28 +0.8
967,346 + HGI48_RS04615 0.28 +0.3
967,379 + HGI48_RS04615 0.32 +1.1
967,379 + HGI48_RS04615 0.32 +0.8
967,380 - HGI48_RS04615 0.32 +1.4
967,467 - HGI48_RS04615 0.42 -0.4
967,630 + HGI48_RS04615 0.62 -0.4
967,671 + HGI48_RS04615 0.66 -0.4
967,672 - HGI48_RS04615 0.67 +0.5
967,676 + HGI48_RS04615 0.67 +0.8
967,677 - HGI48_RS04615 0.67 -0.3
967,728 + HGI48_RS04615 0.73 +0.0
967,729 - HGI48_RS04615 0.73 -1.9
967,729 - HGI48_RS04615 0.73 -0.3
967,729 - HGI48_RS04615 0.73 -1.8
967,802 + HGI48_RS04615 0.82 +0.3
967,889 + +0.1
967,890 - +0.8
967,944 + -2.2
967,945 - -0.3
967,945 - -0.8
967,945 - -1.5
967,947 + -0.5
967,947 + -0.2
967,948 - +0.2
967,948 - -0.2
967,948 - +0.2
967,948 - -1.5
967,948 - +0.2
968,021 - -0.2
968,047 + HGI48_RS04620 0.10 -1.4
968,048 - HGI48_RS04620 0.10 -1.7
968,111 + HGI48_RS04620 0.17 -1.2
968,111 + HGI48_RS04620 0.17 -1.5
968,112 - HGI48_RS04620 0.17 -0.8
968,112 - HGI48_RS04620 0.17 +0.2
968,114 - HGI48_RS04620 0.18 -1.2
968,114 - HGI48_RS04620 0.18 -1.0

Or see this region's nucleotide sequence