Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04560 and HGI48_RS04565 overlap by 8 nucleotides HGI48_RS04565 and HGI48_RS04570 overlap by 11 nucleotides
HGI48_RS04560: HGI48_RS04560 - LacI family DNA-binding transcriptional regulator, at 956,273 to 957,259
_RS04560
HGI48_RS04565: HGI48_RS04565 - ribonuclease Z, at 957,252 to 958,019
_RS04565
HGI48_RS04570: HGI48_RS04570 - ABC transporter ATP-binding protein, at 958,009 to 959,133
_RS04570
Position (kb) 957
958
959 Strain fitness (log2 ratio) -2
-1
0
1
2 at 956.296 kb on + strand at 956.296 kb on + strand at 956.297 kb on - strand at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.701 kb on - strand, within HGI48_RS04560 at 956.701 kb on - strand, within HGI48_RS04560 at 956.701 kb on - strand at 956.701 kb on - strand, within HGI48_RS04560 at 957.183 kb on + strand at 957.183 kb on + strand at 957.253 kb on + strand at 957.253 kb on + strand at 957.391 kb on + strand, within HGI48_RS04565 at 957.454 kb on + strand, within HGI48_RS04565 at 957.556 kb on + strand, within HGI48_RS04565 at 957.556 kb on + strand, within HGI48_RS04565 at 957.557 kb on - strand, within HGI48_RS04565 at 957.677 kb on + strand, within HGI48_RS04565 at 957.677 kb on + strand, within HGI48_RS04565 at 957.684 kb on - strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.854 kb on - strand, within HGI48_RS04565 at 957.854 kb on - strand, within HGI48_RS04565 at 957.854 kb on - strand, within HGI48_RS04565 at 957.854 kb on - strand, within HGI48_RS04565 at 957.854 kb on - strand, within HGI48_RS04565 at 957.985 kb on + strand at 957.986 kb on - strand at 957.986 kb on - strand at 958.199 kb on + strand, within HGI48_RS04570 at 958.199 kb on + strand, within HGI48_RS04570 at 958.199 kb on + strand at 958.199 kb on + strand, within HGI48_RS04570 at 958.200 kb on - strand, within HGI48_RS04570 at 958.469 kb on + strand, within HGI48_RS04570 at 958.469 kb on + strand, within HGI48_RS04570 at 958.469 kb on + strand, within HGI48_RS04570 at 958.469 kb on + strand, within HGI48_RS04570 at 958.549 kb on + strand at 958.568 kb on + strand at 958.568 kb on + strand, within HGI48_RS04570 at 958.568 kb on + strand, within HGI48_RS04570 at 958.568 kb on + strand, within HGI48_RS04570 at 958.568 kb on + strand, within HGI48_RS04570 at 958.568 kb on + strand, within HGI48_RS04570 at 958.568 kb on + strand, within HGI48_RS04570 at 958.569 kb on - strand, within HGI48_RS04570 at 958.683 kb on + strand, within HGI48_RS04570 at 958.747 kb on - strand, within HGI48_RS04570 at 958.883 kb on + strand, within HGI48_RS04570 at 958.884 kb on - strand, within HGI48_RS04570 at 958.884 kb on - strand, within HGI48_RS04570
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 956,296 + -2.2 956,296 + +0.1 956,297 - -0.8 956,700 + HGI48_RS04560 0.43 -1.2 956,700 + HGI48_RS04560 0.43 -0.2 956,700 + HGI48_RS04560 0.43 -1.2 956,700 + +0.2 956,700 + HGI48_RS04560 0.43 +0.4 956,700 + HGI48_RS04560 0.43 +0.0 956,700 + HGI48_RS04560 0.43 -0.1 956,701 - HGI48_RS04560 0.43 +1.1 956,701 - HGI48_RS04560 0.43 -1.0 956,701 - +1.5 956,701 - HGI48_RS04560 0.43 +1.0 957,183 + -0.3 957,183 + -0.6 957,253 + -0.1 957,253 + -0.0 957,391 + HGI48_RS04565 0.18 +1.7 957,454 + HGI48_RS04565 0.26 -0.3 957,556 + HGI48_RS04565 0.40 -1.8 957,556 + HGI48_RS04565 0.40 -0.6 957,557 - HGI48_RS04565 0.40 -0.0 957,677 + HGI48_RS04565 0.55 +1.2 957,677 + HGI48_RS04565 0.55 +0.1 957,684 - HGI48_RS04565 0.56 -1.7 957,853 + HGI48_RS04565 0.78 -2.2 957,853 + HGI48_RS04565 0.78 +0.8 957,853 + HGI48_RS04565 0.78 +0.3 957,853 + HGI48_RS04565 0.78 -0.7 957,853 + HGI48_RS04565 0.78 +0.5 957,853 + HGI48_RS04565 0.78 +0.1 957,853 + HGI48_RS04565 0.78 +0.1 957,853 + HGI48_RS04565 0.78 -1.2 957,853 + +1.8 957,853 + HGI48_RS04565 0.78 -2.2 957,853 + HGI48_RS04565 0.78 +0.5 957,853 + HGI48_RS04565 0.78 -2.0 957,853 + -0.8 957,853 + HGI48_RS04565 0.78 +0.1 957,853 + HGI48_RS04565 0.78 +0.4 957,853 + HGI48_RS04565 0.78 -1.2 957,854 - HGI48_RS04565 0.78 -2.0 957,854 - HGI48_RS04565 0.78 -1.2 957,854 - HGI48_RS04565 0.78 -1.2 957,854 - HGI48_RS04565 0.78 -0.2 957,854 - HGI48_RS04565 0.78 -1.5 957,985 + +0.1 957,986 - +0.7 957,986 - +1.4 958,199 + HGI48_RS04570 0.17 +1.4 958,199 + HGI48_RS04570 0.17 -1.0 958,199 + +2.1 958,199 + HGI48_RS04570 0.17 -1.6 958,200 - HGI48_RS04570 0.17 +0.5 958,469 + HGI48_RS04570 0.41 +0.5 958,469 + HGI48_RS04570 0.41 -0.0 958,469 + HGI48_RS04570 0.41 +0.6 958,469 + HGI48_RS04570 0.41 +0.8 958,549 + +1.2 958,568 + +1.2 958,568 + HGI48_RS04570 0.50 -2.1 958,568 + HGI48_RS04570 0.50 -0.2 958,568 + HGI48_RS04570 0.50 -0.5 958,568 + HGI48_RS04570 0.50 -2.1 958,568 + HGI48_RS04570 0.50 -1.8 958,568 + HGI48_RS04570 0.50 +0.8 958,569 - HGI48_RS04570 0.50 -1.5 958,683 + HGI48_RS04570 0.60 -0.8 958,747 - HGI48_RS04570 0.66 -0.2 958,883 + HGI48_RS04570 0.78 -1.4 958,884 - HGI48_RS04570 0.78 +0.8 958,884 - HGI48_RS04570 0.78 +0.1
Or see this region's nucleotide sequence